{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,10]],"date-time":"2026-11-10T22:10:50Z","timestamp":1794348650458,"version":"4.9.0"},"publisher-location":"Berlin, Heidelberg","reference-count":20,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"value":"9783540734369","type":"print"},{"value":"9783540734376","type":"electronic"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-73437-6_16","type":"book-chapter","created":{"date-parts":[[2007,8,13]],"date-time":"2007-08-13T13:36:44Z","timestamp":1187012204000},"page":"142-149","source":"Crossref","is-referenced-by-count":5,"title":["Finding Compact Structural Motifs"],"prefix":"10.1007","author":[{"given":"Jianbo","family":"Qian","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuai Cheng","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dongbo","family":"Bu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ming","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jinbo","family":"Xu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","reference":[{"key":"16_CR1","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1006\/jmbi.2001.4870","volume":"311","author":"P. Aloy","year":"2001","unstructured":"Aloy, P., Querol, E., Aviles, F.X., Sternberg, M.J.: Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking. Journal of Molecular Biology\u00a0311, 395\u2013C408 (2001)","journal-title":"Journal of Molecular Biology"},{"issue":"5","key":"16_CR2","doi-asserted-by":"publisher","first-page":"698","DOI":"10.1109\/TPAMI.1987.4767965","volume":"9","author":"K.S. Arun","year":"1987","unstructured":"Arun, K.S., Huang, T.S., Blostein, S.D.: Least square fitting of two 3-d point sets. IEEE Transactions on Pattern Analysis and Machine Intelligence\u00a09(5), 698\u2013700 (1987)","journal-title":"IEEE Transactions on Pattern Analysis and Machine Intelligence"},{"key":"16_CR3","doi-asserted-by":"publisher","first-page":"1537","DOI":"10.1110\/ps.062189906","volume":"15","author":"D. Bandyopadhyay","year":"2006","unstructured":"Bandyopadhyay, D., Huan, J., Liu, J., Prins, J., Snoeyink, J., Wang, W., Tropsha, A.: Structure-based function inference using protein family-specific fingerprints. Journal of Protein Science\u00a015, 1537\u20131543 (2006)","journal-title":"Journal of Protein Science"},{"key":"16_CR4","doi-asserted-by":"crossref","unstructured":"Chew, L.P., Kedem, K.: Finding the consensus shape of a protein family. In: Proc. 18th Annual ACM Symposium on Computational Geometry, pp. 64\u201373 (2002)","DOI":"10.1145\/513400.513408"},{"key":"16_CR5","doi-asserted-by":"publisher","first-page":"1015","DOI":"10.1093\/protein\/11.11.1015","volume":"11","author":"I. Gelfand","year":"1998","unstructured":"Gelfand, I., Kister, A., Kulikowski, C., Stoyanov, O.: Geometric invariant core for the vl and vh domains of immunoglobulin molecules. Protein Engineering\u00a011, 1015\u20131025 (1998)","journal-title":"Protein Engineering"},{"key":"16_CR6","first-page":"535","volume":"112","author":"M. Gerstein","year":"1995","unstructured":"Gerstein, M., Altman, R.B.: Average core structure and variability measures for protein families: application to the immunoglobins. Journal of Molecular Biology\u00a0112, 535\u2013542 (1995)","journal-title":"Journal of Molecular Biology"},{"issue":"11","key":"16_CR7","doi-asserted-by":"publisher","first-page":"478","DOI":"10.1016\/S0968-0004(00)89105-7","volume":"20","author":"L. Holm","year":"1995","unstructured":"Holm, L., Sander, C.: Dali: a network tool for protein structure comparison. Trends Biochem Sci.\u00a020(11), 478\u2013480 (1995)","journal-title":"Trends Biochem Sci."},{"key":"16_CR8","unstructured":"Huang, T.S., Blostein, S.D., Margerum, E.A.: Least-square estimation of motion parameters from 3-d point correspondences. In: Proc of the IEEE Conference on Computer Vision and Pattern Recognition, vol. 69 pp. 198\u2013201 (1986)"},{"key":"16_CR9","doi-asserted-by":"publisher","first-page":"12201","DOI":"10.1073\/pnas.0404383101","volume":"101","author":"R. Kolodny","year":"2004","unstructured":"Kolodny, R., Linial, N.: Approximate protein structural alignment in polynomial time. Proc. Natl Acad. Sci.\u00a0101, 12201\u201312206 (2004)","journal-title":"Proc. Natl Acad. Sci."},{"key":"16_CR10","unstructured":"Leibowitz, N., Fligelman, Z.Y., Nussinov, R.: Multiple structural alignment and core detection by geometric hashing. In: Proc. 7th Int. Conf. Intell. Sys. Mol. Biol, pp. 169\u2013177 (1999)"},{"key":"16_CR11","doi-asserted-by":"crossref","unstructured":"Li, M., Ma, B., Wang, L.: Finding similar regions in many strings. In: Proceedings of the thirty-first annual ACM symposium on Theory of computing (STOC), pp. 473\u2013482, Atlanta (May 1999)","DOI":"10.1145\/301250.301376"},{"issue":"1-2","key":"16_CR12","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1016\/j.dam.2004.06.003","volume":"144","author":"C. Moan","year":"2004","unstructured":"Moan, C., Rusu, I.: Hard problems in similarity searching. Discrete Appl. Math.\u00a0144(1-2), 213\u2013227 (2004)","journal-title":"Discrete Appl. Math."},{"key":"16_CR13","doi-asserted-by":"publisher","first-page":"699","DOI":"10.1110\/ps.8.4.699","volume":"8","author":"C. Orengo","year":"1999","unstructured":"Orengo, C.: Cora-topological fingerprints for protein structural familie. Protein Science\u00a08, 699\u2013715 (1999)","journal-title":"Protein Science"},{"key":"16_CR14","doi-asserted-by":"publisher","first-page":"617","DOI":"10.1016\/S0076-6879(96)66038-8","volume":"266","author":"C. Orengo","year":"1996","unstructured":"Orengo, C., Taylor, W.: Ssap: Sequential structure alignment program for protein structure comparison. Methods in Enzymology\u00a0266, 617\u2013635 (1996)","journal-title":"Methods in Enzymology"},{"issue":"2","key":"16_CR15","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1089\/cmb.2006.13.407","volume":"13","author":"M. Shatsky","year":"2006","unstructured":"Shatsky, M., Shulman-Peleg, A., Nussinov, R., Wolfson, H.: The multiple common point set problem and its application to molecule binding pattern detection. Journal of Computational Biology\u00a013(2), 407\u2013428 (2006)","journal-title":"Journal of Computational Biology"},{"issue":"9","key":"16_CR16","doi-asserted-by":"publisher","first-page":"739","DOI":"10.1093\/protein\/11.9.739","volume":"11","author":"I.N. Shindyalov","year":"1998","unstructured":"Shindyalov, I.N., Bourne, P.E.: Protein structure alignment by incremental combinatorial extension ce of the optimal path. Protein Eng.\u00a011(9), 739\u2013747 (1998)","journal-title":"Protein Eng."},{"key":"16_CR17","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1016\/0960-9822(93)90255-M","volume":"3","author":"S. Subbiah","year":"1993","unstructured":"Subbiah, S., Laurents, D.V., Levitt, M.: Structural similarity of dna-binding domains ofbacteriophage repressors and the globin core. Current Biology\u00a03, 141\u2013148 (1993)","journal-title":"Current Biology"},{"key":"16_CR18","doi-asserted-by":"crossref","unstructured":"Xu, J., Jiao, F., Berger, B.: A parameterized algorithm for protein structure alignment. In: RECOMB, pp. 488\u2013499 (2006)","DOI":"10.1007\/11732990_41"},{"issue":"5","key":"16_CR19","doi-asserted-by":"publisher","first-page":"986","DOI":"10.1089\/cmb.2004.11.986","volume":"11","author":"J. Ye","year":"2004","unstructured":"Ye, J., Janardan, R.: Approximate multiple protein structure alignment using the sum-of-pairs distance. Journal of Computational Biology\u00a011(5), 986\u20131000 (2004)","journal-title":"Journal of Computational Biology"},{"key":"16_CR20","doi-asserted-by":"publisher","first-page":"2302","DOI":"10.1093\/nar\/gki524","volume":"33","author":"Y. Zhang","year":"2005","unstructured":"Zhang, Y., Skolnick, J.: Tm-align: a protein structure alignment algorithm based on the tm-score. Nucleic Acids Research\u00a033, 2302\u20132309 (2005)","journal-title":"Nucleic Acids Research"}],"container-title":["Lecture Notes in Computer Science","Combinatorial Pattern Matching"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-73437-6_16.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,4,27]],"date-time":"2021-04-27T06:12:04Z","timestamp":1619503924000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-73437-6_16"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540734369","9783540734376"],"references-count":20,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-73437-6_16","relation":{"is-part-of":[{"id-type":"doi","id":"https:\/\/doi.org\/10.1007\/978-3-540-73437-6","asserted-by":"object"}]},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[]}}