{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,4]],"date-time":"2024-09-04T22:48:23Z","timestamp":1725490103161},"publisher-location":"Berlin, Heidelberg","reference-count":26,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540741251"},{"type":"electronic","value":"9783540741268"}],"license":[{"start":{"date-parts":[[2007,1,1]],"date-time":"2007-01-01T00:00:00Z","timestamp":1167609600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007]]},"DOI":"10.1007\/978-3-540-74126-8_5","type":"book-chapter","created":{"date-parts":[[2007,8,23]],"date-time":"2007-08-23T15:37:50Z","timestamp":1187883470000},"page":"38-48","source":"Crossref","is-referenced-by-count":5,"title":["Bringing Folding Pathways into Strand Pairing Prediction"],"prefix":"10.1007","author":[{"given":"Jieun K.","family":"Jeong","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Piotr","family":"Berman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Teresa M.","family":"Przytycka","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"2","key":"5_CR1","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1016\/S0968-0004(98)01345-0","volume":"24","author":"R.L. Baldwin","year":"1999","unstructured":"Baldwin, R.L., Rose, G.D.: Is protein folding hierarchic? I. II. Folding intermediates and transition states. Trends in Biochemical Sciences\u00a024(2), 77\u201383 (1999)","journal-title":"Trends in Biochemical Sciences"},{"issue":"3","key":"5_CR2","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1016\/S0968-0004(98)01346-2","volume":"134","author":"R.L. Baldwin","year":"1999","unstructured":"Baldwin, R.L., Rose, G.D.: Is protein folding hierarchic? I. Local structure and peptide folding. Trends in Biochemical Sciences\u00a0134(3), 26\u201333 (1999)","journal-title":"Trends in Biochemical Sciences"},{"key":"5_CR3","unstructured":"Berman, P., Jeong, J.: Consistent sets of secondary structures in proteins, \n                  \n                    http:\/\/www.cse.psu.edu\/~jijeong"},{"issue":"3","key":"5_CR4","doi-asserted-by":"publisher","first-page":"565","DOI":"10.1006\/jmbi.1998.1943","volume":"281","author":"C. Bystroff","year":"1998","unstructured":"Bystroff, C., Baker, D.: Prediction of local structure in proteins using a library of sequence-structure motifs. Journal of Molecular Biology\u00a0281(3), 565\u2013577 (1998)","journal-title":"Journal of Molecular Biology"},{"issue":"suppl. 1","key":"5_CR5","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1093\/bioinformatics\/bti1004","volume":"21","author":"J. Cheng","year":"2005","unstructured":"Cheng, J., Baldi, P.: Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithms. Bioinformatics\u00a021(suppl. 1), 75\u201384 (2005)","journal-title":"Bioinformatics"},{"key":"5_CR6","doi-asserted-by":"publisher","first-page":"315","DOI":"10.1016\/0022-2836(78)90043-8","volume":"126","author":"G.M. Crippen","year":"1978","unstructured":"Crippen, G.M.: The tree structural organization of proteins. Journal of Molecular Biology\u00a0126, 315\u2013332 (1978)","journal-title":"Journal of Molecular Biology"},{"issue":"3","key":"5_CR7","doi-asserted-by":"publisher","first-page":"398","DOI":"10.1002\/prot.340230313","volume":"23","author":"T.J. Hubbard","year":"1995","unstructured":"Hubbard, T.J., Park, J.: Fold recognition and ab initio structure predictions using hidden markov models and \u03b2-strand pair potentials. Proteins: Structure, Function, and Genetics\u00a023(3), 398\u2013402 (1995)","journal-title":"Proteins: Structure, Function, and Genetics"},{"issue":"11","key":"5_CR8","doi-asserted-by":"crossref","first-page":"2287","DOI":"10.1002\/pro.5560071106","volume":"7","author":"E.G. Huthinson","year":"1998","unstructured":"Huthinson, E.G., Sessions, R.B., Thornton, J.M., Woolfson, D.N.: Determinants of strand register in antiparallel \u03b2-sheets of proteins. Protein Science\u00a07(11), 2287\u20132300 (1998)","journal-title":"Protein Science"},{"issue":"suppl. 1","key":"5_CR9","doi-asserted-by":"publisher","first-page":"158","DOI":"10.1093\/bioinformatics\/btg1020","volume":"19","author":"Y. Inbar","year":"2003","unstructured":"Inbar, Y., Benyamini, H., Nussinov, R., Wolfson, H.J.: Protein structure prediction via combinatorial assembly of sub-structural units. Bioinformatics\u00a019(suppl. 1), 158\u2013168 (2003)","journal-title":"Bioinformatics"},{"issue":"7","key":"5_CR10","doi-asserted-by":"publisher","first-page":"1028","DOI":"10.1093\/bioinformatics\/bti144","volume":"21","author":"C.L. Kingford","year":"2004","unstructured":"Kingford, C.L., Chazelle, B., Singh, M.: Solving and analyzing side-chain positioning problems using linear and integer programming. Bioinformatics\u00a021(7), 1028\u20131036 (2004)","journal-title":"Bioinformatics"},{"key":"5_CR11","doi-asserted-by":"publisher","first-page":"2119","DOI":"10.1016\/S0006-3495(03)74640-2","volume":"85","author":"J.L. Klepeis","year":"2003","unstructured":"Klepeis, J.L., Floudas, C.A.: Astro-fold: A combinatorial and global optimization framework for ab initio prediction of three-dimensional structures of proteins from the amino acid sequence. Biophysical Journal\u00a085, 2119\u20132146 (2003)","journal-title":"Biophysical Journal"},{"issue":"2","key":"5_CR12","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1006\/jmbi.1999.3006","volume":"293","author":"A. Kryshtafovych","year":"1999","unstructured":"Kryshtafovych, A., Venclovas, C., Fidelis, K., Moult, J.: Protein folding: From the levinthal paradox to structure prediction. Journal of Molecular Biology\u00a0293(2), 283\u2013293 (1999)","journal-title":"Journal of Molecular Biology"},{"issue":"7","key":"5_CR13","doi-asserted-by":"publisher","first-page":"4304","DOI":"10.1073\/pnas.78.7.4304","volume":"78","author":"A.M. Lesk","year":"1981","unstructured":"Lesk, A.M., Rose, G.D.: Folding Units in Globular Proteins. PNAS\u00a078(7), 4304\u20134308 (1981)","journal-title":"PNAS"},{"key":"5_CR14","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1051\/jcp\/1968650044","volume":"65","author":"C. Levinthal","year":"1968","unstructured":"Levinthal, C.: Are there pathways for protein folding? Journal de Chimie Physique et de Physico-Chimie Biologique\u00a065, 44 (1968)","journal-title":"Journal de Chimie Physique et de Physico-Chimie Biologique"},{"issue":"6","key":"5_CR15","doi-asserted-by":"publisher","first-page":"777","DOI":"10.1089\/cmb.2005.12.777","volume":"12","author":"M. Menke","year":"2005","unstructured":"Menke, M., King, J., Berger, B., Cowen, L.: Wrap-and-pack: A new paradigm for beta structural motif recognition with application to recognizing beta trefoils. Journal of Computational Biology\u00a012(6), 777\u2013795 (2005)","journal-title":"Journal of Computational Biology"},{"issue":"3","key":"5_CR16","doi-asserted-by":"publisher","first-page":"285","DOI":"10.1016\/j.sbi.2005.05.011","volume":"15","author":"J. Moult","year":"2005","unstructured":"Moult, J.: A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction. Current Opinion in Structural Biology\u00a015(3), 285\u2013289 (2005)","journal-title":"Current Opinion in Structural Biology"},{"issue":"2","key":"5_CR17","doi-asserted-by":"publisher","first-page":"409","DOI":"10.1110\/ps.24701","volume":"11","author":"T.M. Przytycka","year":"2002","unstructured":"Przytycka, T.M., Srinivasan, R., Rose, G.D.: Recursive domains in proteins. Protein Science\u00a011(2), 409\u2013417 (2002)","journal-title":"Protein Science"},{"issue":"5620","key":"5_CR18","doi-asserted-by":"publisher","first-page":"495","DOI":"10.1038\/268495a0","volume":"268","author":"J.S. Richardson","year":"1977","unstructured":"Richardson, J.S.: beta-Sheet topology and the relatedness of proteins. Nature\u00a0268(5620), 495\u2013500 (1977)","journal-title":"Nature"},{"issue":"3","key":"5_CR19","doi-asserted-by":"publisher","first-page":"447","DOI":"10.1016\/0022-2836(79)90363-2","volume":"134","author":"G.D. Rose","year":"1979","unstructured":"Rose, G.D.: Hierarchic organization of domains in globular proteins. Journal of Molecular Biology\u00a0134(3), 447\u2013470 (1979)","journal-title":"Journal of Molecular Biology"},{"issue":"1","key":"5_CR20","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1002\/prot.10123","volume":"48","author":"I. Ruczinski","year":"2002","unstructured":"Ruczinski, I., Kooperberg, C., Bonneau, R., Baker, D.: Distributions of beta sheets in proteins with application to structure prediction. Proteins: Structure, Function, and Genetics\u00a048(1), 85\u201397 (2002)","journal-title":"Proteins: Structure, Function, and Genetics"},{"issue":"2","key":"5_CR21","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1002\/prot.340220202","volume":"22","author":"R. Srinivasan","year":"1995","unstructured":"Srinivasan, R., Rose, G.D.: LINUS: A hierarchic procedure to predict the fold of a protein. Proteins: Structure, Function, and Genetics\u00a022(2), 81\u201399 (1995)","journal-title":"Proteins: Structure, Function, and Genetics"},{"issue":"2","key":"5_CR22","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1002\/prot.10152","volume":"48","author":"R.E. Steward","year":"2002","unstructured":"Steward, R.E., Thornton, J.M.: Prediction of strand pairing in antiparallel and parallel \u03b2-sheets using information theory. Proteins: Structure, Function, and Genetics\u00a048(2), 178\u2013191 (2002)","journal-title":"Proteins: Structure, Function, and Genetics"},{"key":"5_CR23","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1016\/S0022-2836(77)80072-7","volume":"110","author":"D.N. Woolfson","year":"1977","unstructured":"Woolfson, D.N., Evans, P.A., Hutchinson, E.G., Thornton, J.M.: On the conformation of proteins: The handedness of the connection between parallel \u03b2-strands. Journal of Molecular Biology\u00a0110, 269\u2013283 (1977)","journal-title":"Journal of Molecular Biology"},{"issue":"1","key":"5_CR24","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1142\/S0219720003000186","volume":"1","author":"J. Xu","year":"2003","unstructured":"Xu, J., Li, M., Kim, D., Xu, Y.: Raptor: Optimal protein threading by linear programming. Journal of Bioinformatics and Computational Biology\u00a01(1), 85\u2013117 (2003)","journal-title":"Journal of Bioinformatics and Computational Biology"},{"issue":"4","key":"5_CR25","doi-asserted-by":"publisher","first-page":"1075","DOI":"10.1006\/jmbi.2000.3678","volume":"299","author":"C. Zhang","year":"2002","unstructured":"Zhang, C., Kim, S.-H.: The anatomy of protein [beta]-sheet topology. Journal of Molecular Biology\u00a0299(4), 1075\u20131089 (2002)","journal-title":"Journal of Molecular Biology"},{"issue":"2","key":"5_CR26","doi-asserted-by":"publisher","first-page":"326","DOI":"10.1110\/ps.8.2.326","volume":"8","author":"H. Zhu","year":"1999","unstructured":"Zhu, H., Braun, W.: Sequence specificity, statistical potentials, and three-dimensional structure prediction with self-correcting distance geometry calculations of beta-sheet formation in proteins. Protein Science\u00a08(2), 326\u2013342 (1999)","journal-title":"Protein Science"}],"container-title":["Lecture Notes in Computer Science","Algorithms in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-74126-8_5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T14:14:20Z","timestamp":1558275260000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-74126-8_5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007]]},"ISBN":["9783540741251","9783540741268"],"references-count":26,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-74126-8_5","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2007]]}}}