{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,1,21]],"date-time":"2025-01-21T05:22:32Z","timestamp":1737436952293,"version":"3.33.0"},"publisher-location":"Berlin, Heidelberg","reference-count":16,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540751397"},{"type":"electronic","value":"9783540751403"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-75140-3_8","type":"book-chapter","created":{"date-parts":[[2007,8,31]],"date-time":"2007-08-31T05:03:10Z","timestamp":1188536590000},"page":"106-120","source":"Crossref","is-referenced-by-count":2,"title":["A Formal and Integrated Framework to Simulate Evolution of Biological Pathways"],"prefix":"10.1007","author":[{"given":"Lorenzo","family":"Dematt\u00e9","sequence":"first","affiliation":[]},{"given":"Corrado","family":"Priami","sequence":"additional","affiliation":[]},{"given":"Alessandro","family":"Romanel","sequence":"additional","affiliation":[]},{"given":"Orkun","family":"Soyer","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"8_CR1","doi-asserted-by":"crossref","unstructured":"Regev, A., Shapiro, E.: Cells as computation. Nature (2002)","DOI":"10.1038\/419343a"},{"issue":"1","key":"8_CR2","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/S0020-0190(01)00214-9","volume":"80","author":"C. Priami","year":"2001","unstructured":"Priami, C., Regev, A., Shapiro, E., Silvermann, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Inf. Process. Lett.\u00a080(1), 25\u201331 (2001)","journal-title":"Inf. Process. Lett."},{"key":"8_CR3","unstructured":"Phillips, A., Cardelli, L.: A correct abstract machine for the stochastic pi-calculus. In: Bioconcur 2004, ENTCS (August 2004)"},{"key":"8_CR4","doi-asserted-by":"crossref","unstructured":"Regev, A., Silverman, W., Shapiro, E.: Representation and simulation of biochemical processes using the pi-calculus process algebra. In: Pac. Symp. Biocomput., 459\u2013470 (2001)","DOI":"10.1142\/9789814447362_0045"},{"key":"8_CR5","unstructured":"Romanel, A., Dematt\u00e9, L., Priami, C.: The beta workbench. Technical Report TR-03-2007, The Microsoft Research - University of Trento Centre for Computational and Systems Biology (2007)"},{"issue":"102","key":"8_CR6","doi-asserted-by":"publisher","first-page":"1974","DOI":"10.1073\/pnas.0409522102","volume":"6","author":"R. Sharan","year":"2005","unstructured":"Sharan, R., Suthram, S., Kelley, R.M., Kuhn, T., McCuine, S., Uetz, P., Sittler, T., Karp, R.M., Ideker, T.: Conserved patterns of protein interaction in multiple species. Proc. Natl. Acad. Sci.\u00a06(102), 1974\u20131979 (2005)","journal-title":"Proc. Natl. Acad. Sci."},{"key":"8_CR7","doi-asserted-by":"publisher","first-page":"614","DOI":"10.1016\/j.jmb.2006.02.019","volume":"358","author":"M.M. Babu","year":"2006","unstructured":"Babu, M.M., Teichmann, S.A., Aravind, L.: Evolutionary dynamics of prokaryotic transcriptional regulators. J. Mol. Biol.\u00a0358, 614\u2013633 (2006)","journal-title":"J. Mol. Biol."},{"key":"8_CR8","doi-asserted-by":"publisher","first-page":"16337","DOI":"10.1073\/pnas.0604449103","volume":"103","author":"O. Soyer","year":"2006","unstructured":"Soyer, O., Bonhoeffer, S.: Evolution of complexity in signaling pathways. PNAS\u00a0103, 16337\u201316342 (2006)","journal-title":"PNAS"},{"issue":"30","key":"8_CR9","first-page":"5","volume":"1","author":"T. Pfeiffer","year":"2005","unstructured":"Pfeiffer, T., Schuster, S.: Game-theoretical approaches to studying the evolution of biochemical systems. Trends. Biochem. Sci.\u00a01(30), 5\u201320 (2005)","journal-title":"Trends. Biochem. Sci."},{"key":"8_CR10","doi-asserted-by":"crossref","unstructured":"Pfeiffer, T., Soyer, O.S., Bonhoeffer, S.: The evolution of connectivity in metabolic networks. PLoS Biol.\u00a07(3) (2005)","DOI":"10.1371\/journal.pbio.0030228"},{"issue":"101","key":"8_CR11","first-page":"580","volume":"2","author":"P.F. P","year":"2004","unstructured":"P, P.F., Hakim, V.: Design of genetic networks with specified functions by evolution in silico. Proc. Natl. Acad. Sci.\u00a02(101), 580\u2013585 (2004)","journal-title":"Proc. Natl. Acad. Sci."},{"key":"8_CR12","volume-title":"Artificial Intelligence through Simulated Evolution","author":"L.J. Fogel","year":"1966","unstructured":"Fogel, L.J., Owens, A.J., Walsh, M.J.: Artificial Intelligence through Simulated Evolution. John Wiley, New York (1966)"},{"key":"8_CR13","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1007\/978-3-540-25974-9_3","volume-title":"Computational Methods in Systems Biology","author":"C. Priami","year":"2005","unstructured":"Priami, C., Quaglia, P.: Beta binders for biological interactions. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), vol.\u00a03082, pp. 20\u201333. Springer, Heidelberg (2005)"},{"key":"8_CR14","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1146\/annurev.biochem.69.1.183","volume":"69","author":"A.M. Stock","year":"2000","unstructured":"Stock, A.M., Robinson, V.L., Goudreau, P.N.: Two-component signal transduction. Annu. Rev. Biochem.\u00a069, 183\u2013215 (2000)","journal-title":"Annu. Rev. Biochem."},{"issue":"19","key":"8_CR15","doi-asserted-by":"publisher","first-page":"10078","DOI":"10.1073\/pnas.93.19.10078","volume":"93","author":"C.Y. Huang","year":"1996","unstructured":"Huang, C.Y., Ferrell, J.E.: Ultrasensitivity in the mitogen-activated protein kinase cascade. Proc. Natl. Acad. Sci. USA\u00a093(19), 10078\u201310083 (1996)","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"8_CR16","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","DOI":"10.1007\/11905455_7","volume-title":"Transactions on Computational Systems Biology VII","author":"A. Phillips","year":"2006","unstructured":"Phillips, A., Cardelli, L., Castagna, G.: A Graphical Representation for Biological Processes in the Stochastic pi-Calculus. In: Priami, C., Ing\u00f3lfsd\u00f3ttir, A., Mishra, B., Nielson, H.R. (eds.) Transactions on Computational Systems Biology VII. LNCS (LNBI), vol.\u00a04230, Springer, Heidelberg (2006)"}],"container-title":["Lecture Notes in Computer Science","Computational Methods in Systems Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-75140-3_8.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,20]],"date-time":"2025-01-20T19:31:57Z","timestamp":1737401517000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-75140-3_8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540751397","9783540751403"],"references-count":16,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-75140-3_8","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[]}}