{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T03:10:33Z","timestamp":1725505833390},"publisher-location":"Berlin, Heidelberg","reference-count":24,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540787563"},{"type":"electronic","value":"9783540787570"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-78757-0_7","type":"book-chapter","created":{"date-parts":[[2008,4,2]],"date-time":"2008-04-02T13:05:09Z","timestamp":1207141509000},"page":"71-82","source":"Crossref","is-referenced-by-count":2,"title":["Divide, Align and Full-Search for Discovering Conserved Protein Complexes"],"prefix":"10.1007","author":[{"given":"Pavol","family":"Jancura","sequence":"first","affiliation":[]},{"given":"Jaap","family":"Heringa","sequence":"additional","affiliation":[]},{"given":"Elena","family":"Marchiori","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"1","key":"7_CR1","doi-asserted-by":"publisher","first-page":"242","DOI":"10.1093\/nar\/29.1.242","volume":"29","author":"G.D. Bader","year":"2001","unstructured":"Bader, G.D., Donaldson, I., Wolting, C., Ouellette, B.F.F., Pawson, T., Hogue, C.W.V.: Bind\u2013the biomolecular interaction network database. Nucleic Acids Res\u00a029(1), 242\u2013245 (2001)","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"7_CR2","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1093\/nar\/30.1.303","volume":"30","author":"I. Xenarios","year":"2002","unstructured":"Xenarios, I., Salw\u00ednski, \u0141., Duan, X.J., Higney, P., Kim, S.M., Eisenberg, D.: Dip, the database of interacting proteins: A research tool for studying cellular networks of protein interactions. Nucleic Acids Research\u00a030(1), 303\u2013305 (2002)","journal-title":"Nucleic Acids Research"},{"key":"7_CR3","doi-asserted-by":"publisher","first-page":"11394","DOI":"10.1073\/pnas.1534710100","volume":"100","author":"B.P. Kelley","year":"2003","unstructured":"Kelley, B.P., Sharan, R., Karp, R.M., Sittler, T., Root, D.E., Stockwell, B.R., Ideker, T.: Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proceedings of the National Academy of Science\u00a0100, 11394\u201311399 (2003)","journal-title":"Proceedings of the National Academy of Science"},{"issue":"4","key":"7_CR4","doi-asserted-by":"publisher","first-page":"427","DOI":"10.1038\/nbt1196","volume":"24","author":"R. Sharan","year":"2006","unstructured":"Sharan, R., Ideker, T.: Modeling cellular machinery through biological network comparison. Nature Biotechnology\u00a024(4), 427\u2013433 (2006)","journal-title":"Nature Biotechnology"},{"key":"7_CR5","doi-asserted-by":"crossref","unstructured":"Srinivasan, B.S., Shah, N.H., Flannick, J., Abeliuk, E., Novak, A., Batzoglou, S.: Current Progress in Network Research: Toward Reference Networks for kKey Model Organisms. Brief. in Bioinformatics (Advance access) (2007)","DOI":"10.1093\/bib\/bbm038"},{"key":"7_CR6","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1007\/11415770_4","volume-title":"Research in Computational Molecular Biology","author":"M. Koyut\u00fcrk","year":"2005","unstructured":"Koyut\u00fcrk, M., Grama, A., Szpankowski, W.: Pairwise local alignment of protein interaction networks guided by models of evolution. In: Miyano, S., Mesirov, J., Kasif, S., Istrail, S., Pevzner, P.A., Waterman, M. (eds.) RECOMB 2005. LNCS (LNBI), vol.\u00a03500, pp. 48\u201365. Springer, Heidelberg (2005)"},{"issue":"6","key":"7_CR7","doi-asserted-by":"publisher","first-page":"835","DOI":"10.1089\/cmb.2005.12.835","volume":"12","author":"R. Sharan","year":"2005","unstructured":"Sharan, R., Ideker, T., Kelley, B.P., Shamir, R., Karp, R.M.: Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. Journal of Computional Biology\u00a012(6), 835\u2013846 (2005)","journal-title":"Journal of Computional Biology"},{"issue":"2","key":"7_CR8","doi-asserted-by":"publisher","first-page":"182","DOI":"10.1089\/cmb.2006.13.182","volume":"13","author":"M. Koyut\u00fcrk","year":"2006","unstructured":"Koyut\u00fcrk, M., Kim, Y., Topkara, U., Subramaniam, S., Grama, A., Szpankowski, W.: Pairwise alignment of protein interaction networks. Journal of Computional Biology\u00a013(2), 182\u2013199 (2006)","journal-title":"Journal of Computional Biology"},{"key":"7_CR9","volume-title":"Knowledge Discovery in Proteomics: Graph Theory Analysis of Protein-Protein Interactions","author":"N. Pr\u017eulj","year":"2005","unstructured":"Pr\u017eulj, N.: Knowledge Discovery in Proteomics: Graph Theory Analysis of Protein-Protein Interactions. CRC Press, Boca Raton (2005)"},{"key":"7_CR10","doi-asserted-by":"crossref","unstructured":"Jancura, P., Heringa, J., Marchiori, E.: Dividing protein interaction networks by growing orthologous articulations. IR-BIO-002 (2007), http:\/\/www.cs.vu.nl\/~elena\/diva.pdf","DOI":"10.1007\/978-3-540-88436-1_17"},{"issue":"9","key":"7_CR11","doi-asserted-by":"publisher","first-page":"1169","DOI":"10.1101\/gr.5235706","volume":"16","author":"J. Flannick","year":"2006","unstructured":"Flannick, J., Novak, A., Srinivasan, B.S., McAdams, H.H., Batzoglou, S.: Graemlin: General and robust alignment of multiple large interaction networks. Genome Res.\u00a016(9), 1169\u20131181 (2006)","journal-title":"Genome Res."},{"key":"7_CR12","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-71681-5_2","volume-title":"Research in Computational Molecular Biology","author":"R. Singh","year":"2007","unstructured":"Singh, R., Xu, J., Berger, B.: Global Alignment of Multiple Protein Interaction Networks. In: Speed, T., Huang, H. (eds.) RECOMB 2007. LNCS (LNBI), vol.\u00a04453, Springer, Heidelberg (2007)"},{"issue":"3","key":"7_CR13","doi-asserted-by":"publisher","first-page":"340","DOI":"10.1093\/bioinformatics\/btg415","volume":"20","author":"N. Pr\u017eulj","year":"2004","unstructured":"Pr\u017eulj, N., Wigle, D., Jurisica, I.: Functional topology in a network of protein interactions. Bioinformatics\u00a020(3), 340\u2013384 (2004)","journal-title":"Bioinformatics"},{"key":"7_CR14","unstructured":"Rathod, A.J., Fukami, C.: Mathematical properties of networks of protein interactions. CS374 Fall 2005 Lecture 9. Computer Science Department, Stanford University (2005)"},{"key":"7_CR15","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1038\/35075138","volume":"411","author":"H. Jeong","year":"2001","unstructured":"Jeong, H., Mason, S.P., Barabasi, A.-L., Oltvai, Z.N.: Lethality and centrality in protein networks. NATURE v\u00a0411, 41 (2001)","journal-title":"NATURE v"},{"key":"7_CR16","doi-asserted-by":"crossref","unstructured":"Ekman, D., Light, S., Bj\u00f6rklund, A.K., Elofsson, A.: What properties characterize the hub proteins of the protein-protein interaction network of saccharomyces cerevisiae? Genome Biology\u00a07(6), R45 (2006)","DOI":"10.1186\/gb-2006-7-6-r45"},{"key":"7_CR17","series-title":"Lecture Notes in Artificial Intelligence","doi-asserted-by":"publisher","DOI":"10.1007\/11871637_36","volume-title":"Knowledge Discovery in Databases: PKDD 2006","author":"D. Ucar","year":"2006","unstructured":"Ucar, D., Asur, S., Catalyurek, U., Parthasarathy, S.: Improving functional modularity in protein-protein interactions graphs using hub-induced subgraphs. In: F\u00fcrnkranz, J., Scheffer, T., Spiliopoulou, M. (eds.) PKDD 2006. LNCS (LNAI), vol.\u00a04213, Springer, Heidelberg (2006)"},{"key":"7_CR18","doi-asserted-by":"crossref","unstructured":"Bader, G.D., L\u00e4ssig, M., Wagner, A.: Structure and evolution of protein interaction networks: A statistical model for link dynamics and gene duplications. BMC Evolutionary Biology\u00a04(51) (2004)","DOI":"10.1186\/1471-2148-4-51"},{"issue":"2","key":"7_CR19","first-page":"260","volume":"16","author":"X.L. Li","year":"2005","unstructured":"Li, X.L., Tan, S.H., Foo, C.S., Ng, S.K.: Interaction graph mining for protein complexes using local clique merging. Genome Informatics\u00a016(2), 260\u2013269 (2005)","journal-title":"Genome Informatics"},{"key":"7_CR20","doi-asserted-by":"publisher","first-page":"928","DOI":"10.1002\/pmic.200300636","volume":"4","author":"S.H. Yook","year":"2004","unstructured":"Yook, S.H., Oltvai, Z.N., Barab\u00e1si, A.L.: Functional and topological characterization of protein interaction networks. PROTEOMICS\u00a04, 928\u2013942 (2004)","journal-title":"PROTEOMICS"},{"key":"7_CR21","doi-asserted-by":"crossref","unstructured":"Abou-Rjeili, A., Karypis, G.: Multilevel algorithms for partitioning power-law graphs. In: 20th International Parallel and Distributed Processing Symposium (IPDPS) (2006)","DOI":"10.1109\/IPDPS.2006.1639360"},{"key":"7_CR22","doi-asserted-by":"crossref","unstructured":"Wolsey, L.A.: Integer Programming, 1st edn. Wiley-Interscience (September 9, 1998)","DOI":"10.1002\/9780470050118.ecse244"},{"issue":"2","key":"7_CR23","doi-asserted-by":"crossref","first-page":"e170","DOI":"10.1093\/bioinformatics\/btl295","volume":"23","author":"E. Hirsh","year":"2007","unstructured":"Hirsh, E., Sharan, R.: Identification of conserved protein complexes based on a model of protein network evolution. Bioinformatics\u00a023(2), e170\u2013176 (2007)","journal-title":"Bioinformatics"},{"issue":"1","key":"7_CR24","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y. Benjamini","year":"1995","unstructured":"Benjamini, Y., Hochberg, Y.: Controlling the false discovery rate: A practical and powerful approach to multiple testing. Journal of the Royal Statistical Society. Series B (Methodological)\u00a057(1), 289\u2013300 (1995)","journal-title":"Journal of the Royal Statistical Society. Series B (Methodological)"}],"container-title":["Lecture Notes in Computer Science","Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-78757-0_7.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,2,24]],"date-time":"2024-02-24T10:23:10Z","timestamp":1708770190000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-78757-0_7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540787563","9783540787570"],"references-count":24,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-78757-0_7","relation":{},"subject":[]}}