{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T00:36:18Z","timestamp":1773275778223,"version":"3.50.1"},"publisher-location":"Berlin, Heidelberg","reference-count":63,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"value":"9783540788386","type":"print"},{"value":"9783540788393","type":"electronic"}],"license":[{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008]]},"DOI":"10.1007\/978-3-540-78839-3_32","type":"book-chapter","created":{"date-parts":[[2008,4,1]],"date-time":"2008-04-01T19:26:40Z","timestamp":1207078000000},"page":"372-395","source":"Crossref","is-referenced-by-count":5,"title":["Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs"],"prefix":"10.1007","author":[{"given":"Michael","family":"Sammeth","sequence":"first","affiliation":[]},{"given":"Gabriel","family":"Valiente","sequence":"additional","affiliation":[]},{"given":"Roderic","family":"Guig\u00f3","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"32_CR1","doi-asserted-by":"crossref","first-page":"860","DOI":"10.1038\/35057062","volume":"409","author":"The human sequencing consortium","year":"2001","unstructured":"The human sequencing consortium. Initial sequencing and analysis of the human genome. Nature\u00a0409, 860\u2013921 (2001)","journal-title":"Nature"},{"key":"32_CR2","first-page":"381","volume":"25","author":"C.W. Smith","year":"2000","unstructured":"Smith, C.W., Valcarcel, J.: Alternative pre-mrna splicing: the logic of combinatorial control. Annu. Rev. Genet.\u00a025, 381\u2013388 (2000)","journal-title":"Annu. Rev. Genet."},{"key":"32_CR3","doi-asserted-by":"publisher","first-page":"279","DOI":"10.1146\/annurev.genet.32.1.279","volume":"32","author":"A.J. Lopez","year":"1998","unstructured":"Lopez, A.J.: Alternative splicing of pre-mrna: developmental consequences and mechanisms of regulation. Annu. Rev. Genet.\u00a032, 279\u2013305 (1998)","journal-title":"Annu. Rev. Genet."},{"key":"32_CR4","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1007\/978-3-540-34449-0_7","volume":"44","author":"N.M. Kuyumcu-Martinez","year":"2006","unstructured":"Kuyumcu-Martinez, N.M., Cooper, T.A.: Mis-regulation of alternative splicing causes pathogenesis in myotonic dystrophy. Prog. Mol. Subcell. Biol.\u00a044, 133\u2013159 (2006)","journal-title":"Prog. Mol. Subcell. Biol."},{"key":"32_CR5","doi-asserted-by":"publisher","first-page":"46","DOI":"10.1093\/nar\/gkj031","volume":"34","author":"S. Stamm","year":"2006","unstructured":"Stamm, S., Riethoven, J.J., Le Texier, V., Gopalakrishnan, C., Kumanduri, V., Tang, Y., Barbosa-Morais, N.L., Thanaraj, T.A.: ASD: A bioinformatics resource on alternative splicing. Nucleic Acids Res.\u00a034, D46\u201355 (2006)","journal-title":"Nucleic Acids Res."},{"key":"32_CR6","doi-asserted-by":"publisher","first-page":"169","DOI":"10.1186\/1471-2105-7-169","volume":"7","author":"V. Le Texier","year":"2006","unstructured":"Le Texier, V., Riethoven, J.J., Kumanduri, V., Gopalakrishnan, C., Lopez, F., Gautheret, D., Thanaraj, T.A.: AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. BMC Bioinformatics\u00a07, 169 (2006)","journal-title":"BMC Bioinformatics"},{"key":"32_CR7","first-page":"296","volume":"28","author":"I. Dralyuk","year":"2000","unstructured":"Dralyuk, I., Brudno, M., Gelfand, M.S., Zorn, M., Dubchak, I.: ASDB: Database of alternatively spliced genes. BMC Bioinformatics\u00a028, 296\u2013297 (2000)","journal-title":"BMC Bioinformatics"},{"key":"32_CR8","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1093\/nar\/gkj048","volume":"34","author":"D. Holste","year":"2006","unstructured":"Holste, D., Huo, G., Tung, V., Burge, C.B.: HOLLYWOOD: a comparative relational database of alternative splicing. Nucleic Acids Res.\u00a034, D56\u201362 (2006)","journal-title":"Nucleic Acids Res."},{"key":"32_CR9","doi-asserted-by":"publisher","first-page":"584","DOI":"10.1016\/S0888-7543(03)00204-0","volume":"82","author":"Y. Zhou","year":"2003","unstructured":"Zhou, Y., Zhou, C., Ye, L., Dong, J., Xu, H., Cai, L., Zhang, L., Wei, L.: Database and analyses of known alternatively spliced genes in plants. Genomics\u00a082, 584\u2013595 (2003)","journal-title":"Genomics"},{"key":"32_CR10","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1016\/S0168-9525(01)02525-2","volume":"18","author":"E. Coward","year":"2002","unstructured":"Coward, E., Haas, S., Vingron, M.: SpliceNest: visualizing gene structure and alternative splicing based on EST clusters. Trends in Genetics\u00a018, 53\u201355 (2002)","journal-title":"Trends in Genetics"},{"key":"32_CR11","doi-asserted-by":"publisher","first-page":"186","DOI":"10.1093\/nar\/30.1.186","volume":"30","author":"Y.H. Huang","year":"2002","unstructured":"Huang, Y.H., Chen, Y.T., Lai, J.J., Yang, S.T., Yang, U.C.: PALS db\u00e7: Putative alternative splicing database. Nucleic Acids Res.\u00a030, 186\u2013190 (2002)","journal-title":"Nucleic Acids Res."},{"key":"32_CR12","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1093\/nar\/29.1.255","volume":"29","author":"M. Burset","year":"2001","unstructured":"Burset, M., Seledtsov, I.A., Solovyev, V.V.: SpliceDB: database of canonical and non-canonical mammalian splice sites. Nucleic Acids Res.\u00a029, 255\u2013259 (2001)","journal-title":"Nucleic Acids Res."},{"key":"32_CR13","doi-asserted-by":"publisher","first-page":"260","DOI":"10.1093\/nar\/29.1.260","volume":"29","author":"H. Ji","year":"2001","unstructured":"Ji, H., Zhou, Q., Wen, F., Xia, H., Lu, X., Li, Y.: AsMamDB: An alternative splice database of mammals. Nucleic Acids Res.\u00a029, 260\u2013263 (2001)","journal-title":"Nucleic Acids Res."},{"key":"32_CR14","doi-asserted-by":"publisher","first-page":"2850","DOI":"10.1093\/nar\/29.13.2850","volume":"29","author":"B. Modrek","year":"2001","unstructured":"Modrek, B., Resch, A., Grasso, C., Lee, C.: Genome-wide analysis of alternative splicing using human expressed sequence data. Nucleic Acids Res.\u00a029, 2850\u20132859 (2001)","journal-title":"Nucleic Acids Res."},{"key":"32_CR15","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1186\/gb-2003-4-4-r29","volume":"4","author":"H.D. Huang","year":"2003","unstructured":"Huang, H.D., Horng, J.T., Lee, C.C., Liu, B.J.: Prosplicer: A database of putative alternative splicing information derived from protein, mrna and expressed sequence tag sequence data. Genome Biol.\u00a04, R29 (2003)","journal-title":"Genome Biol."},{"key":"32_CR16","doi-asserted-by":"publisher","first-page":"1815","DOI":"10.1093\/bioinformatics\/btm084","volume":"23","author":"A. Bhasi","year":"2007","unstructured":"Bhasi, A., Pandey, R.V., Utharasamy, S.P., Senapathy, P.: ASD: a bioinformatics resource on alternative splicing. Boinformatics\u00a023, 1815\u20131823 (2007)","journal-title":"Boinformatics"},{"key":"32_CR17","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1016\/j.gene.2005.07.027","volume":"364","author":"H. Nagasaki","year":"2005","unstructured":"Nagasaki, H., Arita, M., Nishizawa, T., Suwa, M., Gotoh, O.: Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes. Gene\u00a0364, 53\u201362 (2005)","journal-title":"Gene"},{"key":"32_CR18","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1093\/nar\/gkl924","volume":"35","author":"E. Kim","year":"2007","unstructured":"Kim, E., Magen, A., Ast, G.: Different levels of alternative splicing among eukaryotes. Nucleic Acids Res.\u00a035, 125\u2013131 (2007)","journal-title":"Nucleic Acids Res."},{"key":"32_CR19","doi-asserted-by":"crossref","unstructured":"Yandell, M., Mungall, C.J., Smith, C., Prochnik, S., Kaminker, J., Hartzell, G., Lewis, G.M., Rubin, S.: Large-scale trends in the evolution of gene structures within 11 animal genomes. PLoS Comput. Biol., vol.\u00a02, p. 15 (2006)","DOI":"10.1371\/journal.pcbi.0020015"},{"key":"32_CR20","doi-asserted-by":"crossref","unstructured":"Grasso, C., Modrek, B., Xing, Y., Lee, C.: Genome-wide detection of alternative splicing in expressed sequences using partial order multiple sequence alignment graphs. In: Pac. Symp. Biocomput., pp. 29\u201341 (2004)","DOI":"10.1142\/9789812704856_0004"},{"key":"32_CR21","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.sbi.2006.01.012","volume":"16","author":"M. Zavolan","year":"2006","unstructured":"Zavolan, M., van Nimwegen, E.: The types and prevalence of alternative splice forms. Curr. Opin. Struct. Biol.\u00a016, 1\u20136 (2006)","journal-title":"Curr. Opin. Struct. Biol."},{"key":"32_CR22","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1101\/gr.8.9.967","volume":"8","author":"L. Florea","year":"1998","unstructured":"Florea, L., Hartzell, G., Zhang, Z., Rubin, G.M., Miller, W.: A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res.\u00a08, 967\u2013974 (1998)","journal-title":"Genome Res."},{"key":"32_CR23","doi-asserted-by":"publisher","first-page":"656","DOI":"10.1101\/gr.229202. Article published online before March 2002","volume":"12","author":"W.J. Kent","year":"2002","unstructured":"Kent, W.J.: BLAT - the blast-like alignment tool. Genome Res.\u00a012, 656\u2013664 (2002)","journal-title":"Genome Res."},{"key":"32_CR24","doi-asserted-by":"publisher","first-page":"244","DOI":"10.1186\/1471-2105-6-244","volume":"6","author":"P. Bonizzoni","year":"2005","unstructured":"Bonizzoni, P., Rizzi, R., Pesole, G.: ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. BMC Bioinformatics\u00a06, 244 (2005)","journal-title":"BMC Bioinformatics"},{"key":"32_CR25","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1093\/nar\/gkl842","volume":"35","author":"K.D. Pruitt","year":"2007","unstructured":"Pruitt, K.D., Tatusova, T., Maglott, D.R.: NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res.\u00a035, D61\u2013D65 (2007)","journal-title":"Nucleic Acids Res."},{"key":"32_CR26","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1093\/nar\/gkl986","volume":"35","author":"D.A. Benson","year":"2007","unstructured":"Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Wheeler, D.L.: GenBank. Nucleic Acids Res.\u00a035, D21\u2013D25 (2007)","journal-title":"Nucleic Acids Res."},{"key":"32_CR27","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1104\/pp.107.096677","volume":"144","author":"A.P. Weber","year":"2007","unstructured":"Weber, A.P., Weber, K.L., Carr, K., C.,, Wilkerson, O.J.B.: Sampling the arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol.\u00a0144, 32\u201342 (2007)","journal-title":"Plant Physiol."},{"key":"32_CR28","doi-asserted-by":"publisher","first-page":"828","DOI":"10.1101\/gr.6018607","volume":"17","author":"Y. Ruan","year":"2007","unstructured":"Ruan, Y., Ooi, H.S., Choo, S.W., Chiu, K.P., Zhao, X.D., Srinivasan, K.G., Yao, F., Choo, C.Y., Liu, J., Ariyaratne, P., Bin, W.G.W., Kuznetsov, V.A., Shahab, A., Sung, W.-K., Bourque, G., Palanisamy, N., Wei, C.-L.: Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using paired-end ditags (pets). Genome Res.\u00a017, 828\u2013838 (2007)","journal-title":"Genome Res."},{"key":"32_CR29","doi-asserted-by":"crossref","unstructured":"Sugnet, C.W., Kent, W.J., Ares, M., Haussler, D.: Transcriptome and genome conservation of alternative splicing events in humans and mice. In: Pac. Symp. Biocomput., pp. 66\u201377 (2004)","DOI":"10.1142\/9789812704856_0007"},{"key":"32_CR30","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1093\/bioinformatics\/18.suppl_1.S181","volume":"18","author":"S. Heber","year":"2002","unstructured":"Heber, S., Alekseyev, M., Sing-Hoi, S., Pevzner, P.: Splicng graphs and EST assembly problem. Bioinformatics\u00a018, 181\u2013188 (2002)","journal-title":"Bioinformatics"},{"key":"32_CR31","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1007\/11415770_17","volume-title":"Research in Computational Molecular Biology","author":"D. Gusfield","year":"2005","unstructured":"Gusfield, D., Bansal, V.: A fundamental decomposition theorem for phylogenetic networks and incompatible characters. In: Miyano, S., Mesirov, J., Kasif, S., Istrail, S., Pevzner, P.A., Waterman, M. (eds.) RECOMB 2005. LNCS (LNBI), vol.\u00a03500, pp. 217\u2013232. Springer, Heidelberg (2005)"},{"key":"32_CR32","doi-asserted-by":"publisher","first-page":"173","DOI":"10.1142\/S0219720004000521","volume":"2","author":"D. Gusfield","year":"2004","unstructured":"Gusfield, D., Eddhu, S., Langley, C.: Optimal, efficient reconstruction of phylogenetic networks with constrained recombination. J. Bioinformatics and Computational Biology\u00a02, 173\u2013213 (2004)","journal-title":"J. Bioinformatics and Computational Biology"},{"key":"32_CR33","unstructured":"University of California Santa Cruz (UCSC) Genome Browser, http:\/\/genome.ucsc.edu"},{"key":"32_CR34","doi-asserted-by":"publisher","first-page":"332","DOI":"10.1038\/ng0893-332","volume":"4","author":"M.S. Boguski","year":"1993","unstructured":"Boguski, M.S., Lowe, T.M., Tolstoshev, C.M.: dbEST\u2013database for \u201dexpressed sequence tags. Nat. Genet.\u00a04, 332\u2013333 (1993)","journal-title":"Nat. Genet."},{"key":"32_CR35","unstructured":"Human Genome Sequencing Consortium, http:\/\/genome.ucsc.edu\/goldenPath\/labs.html"},{"key":"32_CR36","unstructured":"Mouse Genome Sequencing Consortium, http:\/\/www.ensembl.org\/Mus_musculus\/credits.html"},{"key":"32_CR37","unstructured":"R Development Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria (2007) ISBN 3-900051-07-0"},{"key":"32_CR38","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1016\/0092-8674(89)90678-8","volume":"56","author":"C.W. Smith","year":"1989","unstructured":"Smith, C.W., Nadal-Ginard, B.: Mutually exclusive splicing of alpha-tropomyosin exons enforced by an unusual lariat branch point location: implications for constitutive splicing. Cell\u00a056, 749\u2013758 (1989)","journal-title":"Cell"},{"key":"32_CR39","first-page":"3018","volume":"7","author":"Y. Zhuang","year":"1987","unstructured":"Zhuang, Y., Leung, H., Weiner, A.M.: The natural 5\u2019 splice site of simian virus 40 large t antigen can be improved by increasing the base complementarity to u1 rna. Mol. Cell Biol.\u00a07, 3018\u20133020 (1987)","journal-title":"Mol. Cell Biol."},{"key":"32_CR40","doi-asserted-by":"publisher","first-page":"1045","DOI":"10.1126\/science.1825520","volume":"251","author":"H.C. Kuo","year":"1991","unstructured":"Kuo, H.C., Nasim, F.H., Grabowski, P.J.: Control of alternative splicing by the differential binding of u1 small nuclear ribonucleoprotein particle. Science\u00a0251, 1045\u20131050 (1991)","journal-title":"Science"},{"key":"32_CR41","doi-asserted-by":"publisher","first-page":"642","DOI":"10.1101\/gad.5.4.642","volume":"5","author":"M.P. Mullen","year":"1991","unstructured":"Mullen, M.P., Smith, C.W.J., Patton, J.G., Nadal-Girnard, B.: \u03b1-tropomyosin mutually exclusive exon selection: competition between branchpoint\/polypyrimidine tracts determines default exon choice. Genes Dev.\u00a05, 642\u2013655 (1991)","journal-title":"Genes Dev."},{"key":"32_CR42","doi-asserted-by":"crossref","first-page":"809","DOI":"10.1002\/j.1460-2075.1988.tb02879.x","volume":"7","author":"X.Y. Fu","year":"1988","unstructured":"Fu, X.Y., Ge, H., Manley, J.L.: In vitro splicing of mutually exclusive exons from the chicken \u03b2-tropomyosin gene: role of the branch point location and very long pyrimidine stretch. EMBO J.\u00a07, 809\u2013817 (1988)","journal-title":"EMBO J."},{"key":"32_CR43","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1016\/0092-8674(87)90218-2","volume":"27","author":"J.C. Noble","year":"1987","unstructured":"Noble, J.C., Pan, Z.Q., Prives, C., Manley, J.L.: Splicing of sv40 early pre-mrna to large t and small t mrnas utilizes different patterns of lariat branch sites. Cell\u00a027, 227\u2013236 (1987)","journal-title":"Cell"},{"key":"32_CR44","doi-asserted-by":"publisher","first-page":"1460","DOI":"10.1101\/gad.2.11.1460","volume":"2","author":"J.C. Noble","year":"1988","unstructured":"Noble, J.C., Prives, C., Manley, J.L.: Alternative splicing of sv40 early pre-mrna is determined by branch site selection. Genes Dev.\u00a02, 1460\u20131475 (1988)","journal-title":"Genes Dev."},{"key":"32_CR45","doi-asserted-by":"publisher","first-page":"2389","DOI":"10.1093\/nar\/16.6.2389","volume":"16","author":"R. Gattoni","year":"1988","unstructured":"Gattoni, R., Schmitt, P., Stevenin, J.: In vitro splicing of adenovirus e1a transcripts: characterization of novel reactions and of multiple branch points abnormally far from the 3\u2019 splice site. Nucleic Acids Res.\u00a016, 2389\u20132409 (1988)","journal-title":"Nucleic Acids Res."},{"key":"32_CR46","doi-asserted-by":"publisher","first-page":"5633","DOI":"10.1093\/nar\/17.14.5633","volume":"17","author":"D.M. Helfman","year":"1989","unstructured":"Helfman, D.M., Ricci, W.M.: Branch point selection in alternative splicing of tropomyosin pre-mrnas. Nucleic Acids Res.\u00a017, 5633\u20135650 (1989)","journal-title":"Nucleic Acids Res."},{"key":"32_CR47","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1002\/j.1460-2075.1990.tb08101.x","volume":"9","author":"M. Goux-Pelletan","year":"1990","unstructured":"Goux-Pelletan, M., Libri, D., d\u2019Aubenton-Carafa, Y., Fiszman, M., Brody, E., Marie, J.: In vitro splicing of mutually exclusive exons from the chicken \u03b2-tropomyosin gene: role of the branch point location and very long pyrimidine stretch. EMBO J.\u00a09, 241\u2013249 (1990)","journal-title":"EMBO J."},{"key":"32_CR48","doi-asserted-by":"publisher","first-page":"98","DOI":"10.1101\/gad.4.1.98","volume":"4","author":"D.M. Helfman","year":"1990","unstructured":"Helfman, D.M., Roscigno, R.F., Mulligan, G.J., Finn, L.A., Weber, K.S.: Identification of two distinct intron elements involved in alternative splicing of the \u03b2-tropomyosin pre-mRNA. Genes Dev.\u00a04, 98\u2013110 (1990)","journal-title":"Genes Dev."},{"key":"32_CR49","doi-asserted-by":"publisher","first-page":"1268","DOI":"10.1101\/gad.2.10.1268","volume":"2","author":"R. Reed","year":"1988","unstructured":"Reed, R., Maniatis, T.: The role of the mammalian branchpoint sequence in pre-mrna splicing. Genes Dev.\u00a02, 1268\u20131276 (1988)","journal-title":"Genes Dev."},{"key":"32_CR50","doi-asserted-by":"publisher","first-page":"2752","DOI":"10.1073\/pnas.86.8.2752","volume":"86","author":"Y.A. Zhuang","year":"1989","unstructured":"Zhuang, Y.A., Goldstein, A.M., Weiner, A.M.: Uacuaac is the preferred branch site for mammalian mrna splicing. Proc. Natl. Acad. Sci. USA\u00a086, 2752\u20132756 (1989)","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"32_CR51","first-page":"5036","volume":"10","author":"D. Libri","year":"1990","unstructured":"Libri, D., Goux-Pelletan, M., Brody, E., Fiszman, M.Y.: Exon as well as intron sequences are cis-regulating elements for the mutually exclusive alternative splicing of the \u03b2 tropomyosin gene. Mol. Cell Biol.\u00a010, 5036\u20135046 (1990)","journal-title":"Mol. Cell Biol."},{"key":"32_CR52","doi-asserted-by":"publisher","first-page":"681","DOI":"10.1016\/0092-8674(86)90343-0","volume":"46","author":"R. Reed","year":"1986","unstructured":"Reed, R., Maniatis, T.: A role for exon sequences and splice-site proximity in splice-site selection. Cell\u00a046, 681\u2013690 (1986)","journal-title":"Cell"},{"key":"32_CR53","doi-asserted-by":"publisher","first-page":"7725","DOI":"10.1093\/nar\/15.19.7725","volume":"15","author":"H.J. Mardon","year":"1987","unstructured":"Mardon, H.J., Sebastio, G., Baralle, F.E.: A role for exon sequences in alternative splicing of the human fibronectin gene. Nucleic Acids Res.\u00a015, 7725\u20137733 (1987)","journal-title":"Nucleic Acids Res."},{"key":"32_CR54","doi-asserted-by":"publisher","first-page":"5591","DOI":"10.1093\/nar\/13.15.5591","volume":"13","author":"M.B. Somasekhar","year":"1985","unstructured":"Somasekhar, M.B., Mertz, J.E.: Exon mutations that affect the choice of splice sites used in processing the sv40 late transcripts. Nucleic Acids Res.\u00a013, 5591\u20135609 (1985)","journal-title":"Nucleic Acids Res."},{"key":"32_CR55","doi-asserted-by":"publisher","first-page":"1627","DOI":"10.1101\/gad.2.12a.1627","volume":"2","author":"D.M. Helfman","year":"1988","unstructured":"Helfman, D.M., Ricci, W.M., Finn, L.A.: Alternative splicing of tropomyosin pre-mrnas in vitro and in vivo. Genes Dev.\u00a02, 1627\u20131638 (1988)","journal-title":"Genes Dev."},{"key":"32_CR56","doi-asserted-by":"publisher","first-page":"7905","DOI":"10.1093\/nar\/17.19.7905","volume":"17","author":"T.A. Cooper","year":"1989","unstructured":"Cooper, T.A., Ordahl, C.P.: Nucleotide substitutions within the cardiac troponin t alternative exon disrupt pre-mrna alternative splicing. Nucleic Acids Res.\u00a017, 7905\u20137921 (1989)","journal-title":"Nucleic Acids Res."},{"key":"32_CR57","first-page":"1604","volume":"9","author":"R.K. Hampson","year":"1989","unstructured":"Hampson, R.K., La Follette, L., Rottman, F.M.: Alternative processing of bovine growth hormone mRNA is influenced by downstream exon sequences. Mol. Cell Biol.\u00a09, 1604\u20131610 (1989)","journal-title":"Mol. Cell Biol."},{"key":"32_CR58","doi-asserted-by":"crossref","first-page":"787","DOI":"10.1002\/j.1460-2075.1989.tb03439.x","volume":"8","author":"M. Streuli","year":"1989","unstructured":"Streuli, M., Saito, H.: Regulation of tissue-specific alternative splicing: exon-specific cis-elements govern the splicing of leukocyte common antigen pre-mRNA. EMBO J.\u00a08, 787\u2013796 (1989)","journal-title":"EMBO J."},{"key":"32_CR59","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1101\/gad.5.3.389","volume":"5","author":"D.L. Black","year":"1991","unstructured":"Black, D.L.: Does steric interference between splice sites block the splicing of a short c-src neuron-specific exon in non-neuronal cells? Genes Dev.\u00a05, 389\u2013402 (1991)","journal-title":"Genes Dev."},{"key":"32_CR60","doi-asserted-by":"publisher","first-page":"1842","DOI":"10.1126\/science.2063196","volume":"252","author":"D. Libri","year":"1991","unstructured":"Libri, D., Piseri, A., Fiszman, M.Y.: Exon as well as intron sequences are cis-regulating elements for the mutually exclusive alternative splicing of the \u03b2 tropomyosin gene. Science\u00a0252, 1842\u20131845 (1991)","journal-title":"Science"},{"key":"32_CR61","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/0092-8674(90)90236-8","volume":"13","author":"H. Ge","year":"1990","unstructured":"Ge, H., Manley, J.L.: A protein factor, asf, controls cell-specific alternative splicing of sv40 early pre-mrna in vitro. cell\u00a013, 25\u201334 (1990)","journal-title":"cell"},{"key":"32_CR62","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1016\/0092-8674(90)90237-9","volume":"13","author":"A.R. Krainer","year":"1990","unstructured":"Krainer, A.R., Conway, G.C., Kozak, D.: The essential pre-mrna splicing factor sf2 influences 5\u2019 splice site selection by activating proximal sites. Cell\u00a013, 35\u201342 (1990)","journal-title":"Cell"},{"key":"32_CR63","doi-asserted-by":"publisher","first-page":"297","DOI":"10.1093\/nar\/gkm311","volume":"35","author":"S. Foissac","year":"2007","unstructured":"Foissac, S., Sammeth, M.: Astalavista: dynamic and flexible analysis of alternative splicing events in custom gene datasets. Nucleic Acids Res.\u00a035, W297\u2013W299 (2007)","journal-title":"Nucleic Acids Res."}],"container-title":["Lecture Notes in Computer Science","Research in Computational Molecular Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-78839-3_32","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,29]],"date-time":"2025-01-29T11:16:10Z","timestamp":1738149370000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-540-78839-3_32"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008]]},"ISBN":["9783540788386","9783540788393"],"references-count":63,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-78839-3_32","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[],"published":{"date-parts":[[2008]]}}}