{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,19]],"date-time":"2025-03-19T16:17:28Z","timestamp":1742401048971},"publisher-location":"Berlin, Heidelberg","reference-count":23,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540794493"},{"type":"electronic","value":"9783540794509"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-79450-9_25","type":"book-chapter","created":{"date-parts":[[2008,4,29]],"date-time":"2008-04-29T05:54:22Z","timestamp":1209448462000},"page":"268-279","source":"Crossref","is-referenced-by-count":1,"title":["Network-Based Inference of Cancer Progression from Microarray Data"],"prefix":"10.1007","author":[{"given":"Yongjin","family":"Park","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stanley","family":"Shackney","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Russell","family":"Schwartz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"25_CR1","doi-asserted-by":"publisher","first-page":"1152","DOI":"10.1214\/aos\/1176342871","volume":"2","author":"J.R. Antoniak","year":"1974","unstructured":"Antoniak, J.R.: Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems. Annals Stat.\u00a02, 1152\u20131174 (1974)","journal-title":"Annals Stat."},{"key":"25_CR2","volume-title":"Introduction to Algorithms","author":"T.H. Cormen","year":"2001","unstructured":"Cormen, T.H., Leiserson, C.A., Rivest, R.L., Stein, C.: Introduction to Algorithms. MIT Press, Cambridge (2001)"},{"key":"25_CR3","doi-asserted-by":"publisher","first-page":"477","DOI":"10.1016\/j.jtbi.2004.02.021","volume":"228","author":"R. Desper","year":"2004","unstructured":"Desper, R., Khan, J., Schaffer, A.A.: Tumor classification using phylogenetic methods on expression data. J. Theor. Biol.\u00a0228, 477\u2013496 (2004)","journal-title":"J. Theor. Biol."},{"key":"25_CR4","first-page":"403","volume":"21","author":"Z.H. Fang","year":"2006","unstructured":"Fang, Z.H., Han, Z.C.: The transcription factor E2F: a crucial switch in the control of homeostasis and tumorigenesis. Histol. Histopathol.\u00a021, 403\u2013413 (2006)","journal-title":"Histol. Histopathol."},{"key":"25_CR5","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1089\/106652700750050961","volume":"7","author":"N. Friedman","year":"2000","unstructured":"Friedman, N., Linial, M., Nachman, I., Pe\u2019er, D.: Using Bayesian networks to analyze expression data. J. Comput. Biol.\u00a07, 601\u2013620 (2000)","journal-title":"J. Comput. Biol."},{"key":"25_CR6","doi-asserted-by":"publisher","first-page":"531","DOI":"10.1126\/science.286.5439.531","volume":"286","author":"T.R. Golub","year":"1999","unstructured":"Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gaasenbeej, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Cligiuri, M.A., Bloomfield, C.D., Lander, E.S.: Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science\u00a0286, 531\u2013537 (1999)","journal-title":"Science"},{"key":"25_CR7","doi-asserted-by":"publisher","first-page":"775","DOI":"10.1016\/S0140-6736(04)15693-6","volume":"363","author":"M.H. Jones","year":"2004","unstructured":"Jones, M.H., Virtanen, C., Honjoh, D., Miyoshi, T., Satoh, Y., Okumura, S., Nakagawa, K., Nomura, H., Ishikawa, Y.: Two prognostically significant subtypes of high-grade lung neuroenedocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles. Lancet\u00a0363, 775\u2013781 (2004)","journal-title":"Lancet"},{"key":"25_CR8","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/j.biosystems.2004.03.004","volume":"75","author":"S. Kim","year":"2004","unstructured":"Kim, S., Imoto, S., Miyano, S.: Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data. Biosystems\u00a075, 57\u201365 (2004)","journal-title":"Biosystems"},{"key":"25_CR9","doi-asserted-by":"publisher","first-page":"3448","DOI":"10.1093\/bioinformatics\/bti551","volume":"21","author":"S. Maere","year":"2005","unstructured":"Maere, S., Heymans, K., Kuiper, M.: BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks. Bioinformatics\u00a021, 3448\u20133449 (2005)","journal-title":"Bioinformatics"},{"key":"25_CR10","unstructured":"Murphy, K.: Bayes net toolbox for Matlab (2007), \n                  \n                    http:\/\/www.cs.ubc.ca\/~murphyk\/Software\/BNT\/bnt.html"},{"issue":"2","key":"25_CR11","doi-asserted-by":"publisher","first-page":"249","DOI":"10.2307\/1390653","volume":"9","author":"R.M. Neal","year":"2000","unstructured":"Neal, R.M.: Markov chain sampling methods for Dirichlet process mixture models. J. Comput. Graph. Stat.\u00a09(2), 249\u2013265 (2000)","journal-title":"J. Comput. Graph. Stat."},{"key":"25_CR12","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1126\/science.959840","volume":"194","author":"P.C. Nowell","year":"1976","unstructured":"Nowell, P.C.: The clonal evolution of tumor cell populations. Science\u00a0194, 23\u201328 (1976)","journal-title":"Science"},{"key":"25_CR13","doi-asserted-by":"publisher","first-page":"747","DOI":"10.1038\/35021093","volume":"406","author":"C.M. Perou","year":"2000","unstructured":"Perou, C.M., Sorlie, T., Eisen, M.B., van de Rijn, M.M., Jeffrey, S.S., Rees, C.A., Pollack, J.R., Ross, D.T., Johnsen, H., Akslen, L.A., Fluge, O., Pergamenschikov, A., WIlliams, C., Zhu, S.X., Lonning, P.E., Borresen-Dale, A.-L., Brown, P.O., Botstein, D.: Molecular portraits of human breast tumors. Nature\u00a0406, 747\u2013752 (2000)","journal-title":"Nature"},{"issue":"16","key":"25_CR14","doi-asserted-by":"publisher","first-page":"1988","DOI":"10.1093\/bioinformatics\/btl284","volume":"22","author":"Z.S. Qin","year":"2006","unstructured":"Qin, Z.S.: Clustering microarray gene expression data using weighted Chinese restaurant process. Bioinformatics\u00a022(16), 1988\u20131997 (2006)","journal-title":"Bioinformatics"},{"key":"25_CR15","first-page":"554","volume-title":"Advances in Neural Information Processing Systems","author":"C.E.. Rasmussen","year":"2000","unstructured":"Rasmussen, C.E.: The infinite Gaussian mixture model. In: Solla, S.A., Lean, T.K., Muller, K.-R. (eds.) Advances in Neural Information Processing Systems, vol.\u00a012, pp. 554\u2013560. MIT Press, Cambridge (2000)"},{"key":"25_CR16","unstructured":"Schmidt, M., Niculescu-Mizil, A., Murphy, K.: Learning graphical model structure using L1-regularization paths. In: Proceedings of the 22nd Conference on Artificial Intelligence (AAAI 2007) (2007)"},{"issue":"2","key":"25_CR17","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1038\/ng1165","volume":"34","author":"E. Segal","year":"2003","unstructured":"Segal, E., Shapira, M., Regev, A., Pe\u2019er, D., Botstein, D., Koller, D., Friedman, N.: Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat. Genet.\u00a034(2), 166\u2013176 (2003)","journal-title":"Nat. Genet."},{"key":"25_CR18","doi-asserted-by":"publisher","first-page":"278","DOI":"10.1097\/00125480-200309000-00003","volume":"10","author":"S.E. Shackney","year":"2003","unstructured":"Shackney, S.E., Silverman, J.F.: Molecular evolutionary patterns in breast cancer. Anat. Pathology\u00a010, 278\u2013290 (2003)","journal-title":"Anat. Pathology"},{"key":"25_CR19","doi-asserted-by":"publisher","first-page":"10869","DOI":"10.1073\/pnas.191367098","volume":"98","author":"T. Sorlie","year":"2001","unstructured":"Sorlie, T., Perou, C.M., Tibshirani, R., Aas, T., Geisler, S., Johnsen, H., Hastie, T., Eisen, M.B., van de Rijn, M., Jeffrey, S.S., Thorsen, T., Quist, H., Matese, J.C., Brown, P.O., Botstein, D., Lonning, P.E., Borresen-Dale, A.-L.: Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc. Natl. Acad. Sci. USA\u00a098, 10869\u201310874 (2001)","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"25_CR20","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1038\/10343","volume":"22","author":"S. Tavazoie","year":"1999","unstructured":"Tavazoie, S., Hughes, J.D., Campbell, M.J., Cho, R.J., Church, G.M.: Systematic determination of genetic network architecture. Nature Genet\u00a022, 281\u2013285 (1999)","journal-title":"Nature Genet"},{"key":"25_CR21","unstructured":"Teyssier, M., Koller, D.: Ordering-based search: A simple and effective algorithm for learning Bayesian networks. In: Proceedings of the 21th Annual Conference on Uncertainty in Artificial Intelligence (UAI-2005), pp. 584\u2013559 (2005)"},{"key":"25_CR22","doi-asserted-by":"publisher","first-page":"2403","DOI":"10.1016\/j.ejca.2005.08.005","volume":"41","author":"P.K. Tsantoulis","year":"2005","unstructured":"Tsantoulis, P.K., Gorgoulis, V.G.: Involvement of E2F transcription factor family in cancer. Eur. J. Cancer\u00a041, 2403\u20132413 (2005)","journal-title":"Eur. J. Cancer"},{"issue":"6871","key":"25_CR23","doi-asserted-by":"publisher","first-page":"530","DOI":"10.1038\/415530a","volume":"415","author":"L. \u2019t Veer van","year":"2002","unstructured":"van \u2019t Veer, L., Dai, H., van de Vijver, M., He, Y., Hart, A., Mao, M., Peterse, H., van der Kooy, K., Marton, M., Witteveen, A., Schreiber, G., Kerkhoven, R., Roberts, C., Linsley, P., Bernards, R., Friend, S.: Gene expression profiling predicts clinical outcome of breast cancer. Nature\u00a0415(6871), 530\u2013536 (2002)","journal-title":"Nature"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-79450-9_25.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,4,27]],"date-time":"2021-04-27T07:22:03Z","timestamp":1619508123000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-79450-9_25"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540794493","9783540794509"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-79450-9_25","relation":{},"subject":[]}}