{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,28]],"date-time":"2025-03-28T02:25:53Z","timestamp":1743128753723,"version":"3.40.3"},"publisher-location":"Berlin, Heidelberg","reference-count":26,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540873600"},{"type":"electronic","value":"9783540873617"}],"license":[{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008]]},"DOI":"10.1007\/978-3-540-87361-7_22","type":"book-chapter","created":{"date-parts":[[2008,9,17]],"date-time":"2008-09-17T12:59:00Z","timestamp":1221656340000},"page":"259-270","source":"Crossref","is-referenced-by-count":1,"title":["Fast Bayesian Haplotype Inference Via Context Tree Weighting"],"prefix":"10.1007","author":[{"given":"Pasi","family":"Rastas","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jussi","family":"Kollin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mikko","family":"Koivisto","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"22_CR1","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1038\/ng1697","volume":"38","author":"D.F. Conrad","year":"2006","unstructured":"Conrad, D.F., Andrews, T.D., Carter, N.P., Hurles, M.E., Pritchard, J.K.: A high-resolution survey of deletion polymorphism in the human genome. Nat. Genet.\u00a038, 75\u201381 (2006)","journal-title":"Nat. Genet."},{"key":"22_CR2","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"354","DOI":"10.1007\/978-3-540-71681-5_25","volume-title":"Research in Computational Molecular Biology","author":"E. Corona","year":"2007","unstructured":"Corona, E., Raphael, B.J., Eskin, E.: Identification of deletion polymorphisms from haplotypes. In: Speed, T., Huang, H. (eds.) RECOMB 2007. LNCS (LNBI), vol.\u00a04453, pp. 354\u2013365. Springer, Heidelberg (2007)"},{"key":"22_CR3","doi-asserted-by":"publisher","first-page":"684","DOI":"10.1086\/520823","volume":"81","author":"J.E. Kohler","year":"2007","unstructured":"Kohler, J.E., Cutler, D.J.: Simultaneous discovery and testing of deletions for disease associations in SNP genotyping studies. Am. J. Hum. Genet.\u00a081, 684\u2013699 (2007)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR4","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1101\/gr.5774507","volume":"17","author":"V. Bansal","year":"2007","unstructured":"Bansal, V., Bashir, A., Bafna, V.: Evidence for large inversion polymorphisms in the human genome from HapMap data. Genome Res.\u00a017, 219\u2013230 (2007)","journal-title":"Genome Res."},{"key":"22_CR5","first-page":"111","volume":"7","author":"A.G. Clark","year":"1990","unstructured":"Clark, A.G.: Inference of haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol.\u00a07, 111\u2013122 (1990)","journal-title":"Mol. Biol. Evol."},{"key":"22_CR6","first-page":"921","volume":"12","author":"L. Excoffier","year":"1995","unstructured":"Excoffier, L., Slatkin, M.: Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol.\u00a012, 921\u2013927 (1995)","journal-title":"Mol. Biol. Evol."},{"key":"22_CR7","first-page":"799","volume":"56","author":"J.C. Long","year":"1995","unstructured":"Long, J.C., Williams, R.C., Urbanek, M.: An E-M algorithm and testing strategy for multiple-locus haplotypes. Am. J. Hum. Genet.\u00a056, 799\u2013810 (1995)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR8","doi-asserted-by":"publisher","first-page":"978","DOI":"10.1086\/319501","volume":"68","author":"M. Stephens","year":"2001","unstructured":"Stephens, M., Smith, N., Donnelly, P.: A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet.\u00a068, 978\u2013989 (2001)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR9","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1086\/338446","volume":"70","author":"T. Niu","year":"2002","unstructured":"Niu, T., Qin, Z., Xu, X., Liu, J.: Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am. J. Hum. Genet.\u00a070, 157\u2013169 (2002)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR10","doi-asserted-by":"publisher","first-page":"104","DOI":"10.1093\/bioinformatics\/bth149","volume":"20","author":"E. Halperin","year":"2004","unstructured":"Halperin, E., Eskin, E.: Haplotype reconstruction from genotype data using imperfect phylogeny. Bioinformatics\u00a020, 104\u2013113 (2004)","journal-title":"Bioinformatics"},{"key":"22_CR11","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"140","DOI":"10.1007\/11557067_12","volume-title":"Algorithms in Bioinformatics","author":"P. Rastas","year":"2005","unstructured":"Rastas, P., Koivisto, M., Mannila, H., Ukkonen, E.: A hidden Markov technique for haplotype reconstruction. In: Casadio, R., Myers, G. (eds.) WABI 2005. LNCS (LNBI), vol.\u00a03692, pp. 140\u2013151. Springer, Heidelberg (2005)"},{"key":"22_CR12","doi-asserted-by":"crossref","unstructured":"Kimmel, G., Shamir, R.: Genotype resolution and block identification using likelihood. In: Proceeding of the National Academy of Sciences of the United States of America (PNAS), vol.\u00a0102, pp. 158\u2013162 (2005)","DOI":"10.1073\/pnas.0404730102"},{"key":"22_CR13","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1086\/502802","volume":"78","author":"P. Scheet","year":"2006","unstructured":"Scheet, P., Stephens, M.: A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet.\u00a078, 629\u2013644 (2006)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR14","doi-asserted-by":"publisher","first-page":"542","DOI":"10.1186\/1471-2105-7-542","volume":"7","author":"L. Eronen","year":"2006","unstructured":"Eronen, L., Geerts, F., Toivonen, H.: Haplorec: efficient and accurate large-scale reconstruction of haplotypes. BMC Bioinformatics\u00a07, 542 (2006)","journal-title":"BMC Bioinformatics"},{"key":"22_CR15","doi-asserted-by":"publisher","first-page":"1084","DOI":"10.1086\/521987","volume":"81","author":"S. Browning","year":"2007","unstructured":"Browning, S., Browning, B.: Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet.\u00a081, 1084\u20131097 (2007)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR16","doi-asserted-by":"publisher","first-page":"653","DOI":"10.1109\/18.382012","volume":"41","author":"F.M.J. Willems","year":"1995","unstructured":"Willems, F.M.J., Shtarkov, Y.M., Tjalkens, T.J.: The context-tree weighting method: Basic properties. IEEE Trans. Inform. Theory\u00a041, 653\u2013664 (1995)","journal-title":"IEEE Trans. Inform. Theory"},{"key":"22_CR17","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1023\/A:1008923215028","volume":"11","author":"R.M. Neal","year":"2001","unstructured":"Neal, R.M.: Annealed importance sampling. Statist. Comput.\u00a011, 125\u2013139 (2001)","journal-title":"Statist. Comput."},{"key":"22_CR18","unstructured":"K\u00e4\u00e4ri\u00e4inen, M., Landwehr, N., Lappalainen, S., Mielik\u00e4inen, T.: Combining haplotypers. Technical Report C-2007-57, Department of Computer Science, University of Helsinki (2007)"},{"key":"22_CR19","doi-asserted-by":"crossref","first-page":"1299","DOI":"10.1038\/nature04226","volume":"437","author":"The International HapMap Consortium","year":"2005","unstructured":"The International HapMap Consortium: A haplotype map of the human genome. Nature\u00a0437, 1299\u20131320 (2005)","journal-title":"Nature"},{"key":"22_CR20","doi-asserted-by":"publisher","first-page":"437","DOI":"10.1086\/500808","volume":"78","author":"J. Marchini","year":"2006","unstructured":"Marchini, J., Cutler, D., Patterson, N., et al.: A comparison of phasing algorithms for trios and unrelated individuals. Am. J. Hum. Genet.\u00a078, 437\u2013450 (2006)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR21","doi-asserted-by":"publisher","first-page":"792","DOI":"10.1109\/18.661523","volume":"44","author":"F.M.J. Willems","year":"1998","unstructured":"Willems, F.M.J.: The context-tree weighting method: Extensions. IEEE Trans. Inform. Theory\u00a044, 792\u2013798 (1998)","journal-title":"IEEE Trans. Inform. Theory"},{"key":"22_CR22","doi-asserted-by":"publisher","first-page":"1129","DOI":"10.1086\/344347","volume":"71","author":"S. Lin","year":"2002","unstructured":"Lin, S., Cutler, D.J., Zwick, M.E., Chakravarti, A.: Haplotype inference in random population samples. Am. J. Hum. Genet.\u00a071, 1129\u20131137 (2002)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR23","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1086\/428594","volume":"76","author":"M. Stephens","year":"2005","unstructured":"Stephens, M., Scheet, P.: Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am. J. Hum. Genet.\u00a076, 449\u2013462 (2005)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR24","doi-asserted-by":"publisher","first-page":"1576","DOI":"10.1101\/gr.3709305","volume":"15","author":"S.F. Schaffner","year":"2005","unstructured":"Schaffner, S.F., Foo, C., Gabriel, S., Reich, D., Daly, M.J., Altshuler, D.: Calibrating a coalescent simulation of human genome sequence variation. Genome Res.\u00a015, 1576\u20131583 (2005)","journal-title":"Genome Res."},{"key":"22_CR25","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1086\/381000","volume":"74","author":"C.S. Carlson","year":"2004","unstructured":"Carlson, C.S., Eberle, M.A., Rieder, M.J., Yi, Q., Kruglyak, L., Nickerson, D.A.: Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am. J. Hum. Genet.\u00a074, 105\u2013120 (2004)","journal-title":"Am. J. Hum. Genet."},{"key":"22_CR26","first-page":"134","volume-title":"Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology","author":"E. Eskin","year":"2000","unstructured":"Eskin, E., Grundy, W.N., Singer, Y.: Protein family classification using sparse markov transducers. In: Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, pp. 134\u2013145. AAAI Press, Menlo Park (2000)"}],"container-title":["Lecture Notes in Computer Science","Algorithms in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-87361-7_22","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,2]],"date-time":"2024-05-02T03:34:28Z","timestamp":1714620868000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-540-87361-7_22"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008]]},"ISBN":["9783540873600","9783540873617"],"references-count":26,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-87361-7_22","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2008]]}}}