{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T06:56:26Z","timestamp":1725519386567},"publisher-location":"Berlin, Heidelberg","reference-count":14,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540884347"},{"type":"electronic","value":"9783540884361"}],"license":[{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008]]},"DOI":"10.1007\/978-3-540-88436-1_39","type":"book-chapter","created":{"date-parts":[[2008,10,6]],"date-time":"2008-10-06T12:56:07Z","timestamp":1223297767000},"page":"460-470","source":"Crossref","is-referenced-by-count":3,"title":["Accelerating BLASTP on the Cell Broadband Engine"],"prefix":"10.1007","author":[{"given":"Huiliang","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bertil","family":"Schmidt","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wolfgang","family":"M\u00fcller-Wittig","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"3","key":"39_CR1","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"S.F. Altschul","year":"1990","unstructured":"Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.: Basic Local Alignment Search Tool. J. Mol. Biol.\u00a0215(3), 403\u2013410 (1990)","journal-title":"J. Mol. Biol."},{"issue":"7","key":"39_CR2","doi-asserted-by":"publisher","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","volume":"25","author":"S.F. Altschul","year":"1997","unstructured":"Altschul, S.F., et al.: Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs. Nucleic Acid Research\u00a025(7), 3389\u20133402 (1997)","journal-title":"Nucleic Acid Research"},{"issue":"4","key":"39_CR3","doi-asserted-by":"publisher","first-page":"965","DOI":"10.1089\/cmb.2006.13.965","volume":"13","author":"M. Cameron","year":"2006","unstructured":"Cameron, M., Williams, H.E., Cannane, A.: A Deterministic Finite Automaton for Faster Protein Hit Detection in BLAST. Journal of Computational Biology\u00a013(4), 965\u2013978 (2006)","journal-title":"Journal of Computational Biology"},{"issue":"3","key":"39_CR4","doi-asserted-by":"publisher","first-page":"116","DOI":"10.1109\/TCBB.2004.32","volume":"1","author":"M. Cameron","year":"2004","unstructured":"Cameron, M., Williams, H.E., Cannane, A.: Improved Gapped Alignment in BLAST. IEEE Trans. Computational Biology and Bioinformatics\u00a01(3), 116\u2013129 (2004)","journal-title":"IEEE Trans. Computational Biology and Bioinformatics"},{"key":"39_CR5","doi-asserted-by":"crossref","unstructured":"Jacob, A., Lancaster, J., Harris, B., Buhler, J., Chamberlain, R.: Mercury BLASTP: Accelerating Protein Sequence Alignment. ACM Transactions on Reconfigurable Technology and Systems(to appear, 2008)","DOI":"10.1145\/1371579.1371581"},{"issue":"4\/5","key":"39_CR6","first-page":"598","volume":"49","author":"J.A. Kahle","year":"2005","unstructured":"Kahle, J.A., et al.: Introduction the Cell multiprocessor. IBM Journal of Research and Development\u00a049(4\/5), 598\u2013604 (2005)","journal-title":"IBM Journal of Research and Development"},{"issue":"4","key":"39_CR7","doi-asserted-by":"publisher","first-page":"656","DOI":"10.1101\/gr.229202","volume":"12","author":"W.J. Kent","year":"2002","unstructured":"Kent, W.J.: BLAT \u2013 The BLAST-like Alignment Tool. Genome Research\u00a012(4), 656\u2013664 (2002)","journal-title":"Genome Research"},{"issue":"3","key":"39_CR8","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1109\/MM.2006.49","volume":"26","author":"M. Kistler","year":"2006","unstructured":"Kistler, M., Perrone, F., Petrini, F.: Cell multiprocessor communication network: built for speed. IEEE Micro.\u00a026(3), 10\u201323 (2006)","journal-title":"IEEE Micro."},{"issue":"3","key":"39_CR9","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1142\/S0219720004000661","volume":"2","author":"M. Li","year":"2004","unstructured":"Li, M., Ma, B., Kisman, D., Tromp, J.: Patternhunter II: Highly Sensitive and Fast Homology Search. J. Bioinformatics and Computational Biology\u00a02(3), 417\u2013439 (2004)","journal-title":"J. Bioinformatics and Computational Biology"},{"issue":"8","key":"39_CR10","doi-asserted-by":"publisher","first-page":"740","DOI":"10.1109\/TPDS.2006.112","volume":"17","author":"C. Oehmen","year":"2006","unstructured":"Oehmen, C., Nieplocha, J.: ScalaBLAST: A scalable implementation of BLAST for high-performance data-intensive bioinformatics analysis. IEEE Transactions on Parallel and Distributed Systems\u00a017(8), 740\u2013749 (2006)","journal-title":"IEEE Transactions on Parallel and Distributed Systems"},{"key":"39_CR11","doi-asserted-by":"crossref","unstructured":"Pham, D., et al.: The design and implementation of a first-generation Cell processor. In: Proceedings IEEE ISSCC 2005, San Francisco, CA, pp. 184\u2013185 (2005)","DOI":"10.1109\/ISSCC.2005.1493930"},{"key":"39_CR12","doi-asserted-by":"crossref","unstructured":"Sachdeva, V., Kistler, M., Speight, E., Tzeng, T.H.K.: Exploring the viability of the Cell Broadband Engine for bioinformatics applications. In: 6th IEEE International Workshop on High Performance Computational Biology (HiCOMB 2007), Long Beach, CA (2007)","DOI":"10.1109\/IPDPS.2007.370449"},{"key":"39_CR13","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","volume":"147","author":"T.F. Smith","year":"1981","unstructured":"Smith, T.F., Waterman, M.S.: Identification of Common Molecular Subsequences. J. Mol. Biol.\u00a0147, 195\u2013197 (1981)","journal-title":"J. Mol. Biol."},{"key":"39_CR14","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-68111-3_132","volume-title":"Parallel Processing and Applied Mathematics","author":"A. Wirawan","year":"2008","unstructured":"Wirawan, A., Kwoh, C.K., Schmidt, B.: Parallel DNA Sequence Alignment on the Cell Broadband Engine. In: Wyrzykowski, R., Dongarra, J., Karczewski, K., Wa\u015bniewski, J. (eds.) PPAM 2007. LNCS, vol.\u00a04967. Springer, Heidelberg (to appear, 2008)"}],"container-title":["Lecture Notes in Computer Science","Pattern Recognition in Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-88436-1_39","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,25]],"date-time":"2019-01-25T08:26:43Z","timestamp":1548404803000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-88436-1_39"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008]]},"ISBN":["9783540884347","9783540884361"],"references-count":14,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-88436-1_39","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2008]]}}}