{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T06:49:01Z","timestamp":1725518941686},"publisher-location":"Berlin, Heidelberg","reference-count":34,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540885610"},{"type":"electronic","value":"9783540885627"}],"license":[{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008]]},"DOI":"10.1007\/978-3-540-88562-7_22","type":"book-chapter","created":{"date-parts":[[2008,10,4]],"date-time":"2008-10-04T09:12:53Z","timestamp":1223111573000},"page":"308-327","source":"Crossref","is-referenced-by-count":4,"title":["On Inner and Outer Descriptions of the Steady-State Flux Cone of a Metabolic Network"],"prefix":"10.1007","author":[{"given":"Abdelhalim","family":"Larhlimi","sequence":"first","affiliation":[]},{"given":"Alexander","family":"Bockmayr","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"22_CR1","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4613-1161-4","volume-title":"The Regulation of Cellular Systems","author":"R. Heinrich","year":"1996","unstructured":"Heinrich, R., Schuster, S.: The Regulation of Cellular Systems. Chapman and Hall, New York (1996)"},{"issue":"7","key":"22_CR2","doi-asserted-by":"publisher","first-page":"763","DOI":"10.1002\/bit.10849","volume":"84","author":"M. Covert","year":"2003","unstructured":"Covert, M., Famili, I., Palsson, B.: Identifying constraints that govern cell behavior: a key to converting conceptual to computational models in biology? Biotechnol. Bioeng.\u00a084(7), 763\u2013772 (2003)","journal-title":"Biotechnol. Bioeng."},{"issue":"11","key":"22_CR3","doi-asserted-by":"publisher","first-page":"1147","DOI":"10.1038\/81125","volume":"18","author":"B. Palsson","year":"2000","unstructured":"Palsson, B.: The challenges of in silico biology. Nat. Biotechnol.\u00a018(11), 1147\u20131150 (2000)","journal-title":"Nat. Biotechnol."},{"issue":"11","key":"22_CR4","doi-asserted-by":"publisher","first-page":"886","DOI":"10.1038\/nrmicro1023","volume":"2","author":"N. Price","year":"2004","unstructured":"Price, N., Reed, J., Palsson, B.: Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol.\u00a02(11), 886\u2013897 (2004)","journal-title":"Nat. Rev. Microbiol."},{"issue":"8","key":"22_CR5","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1016\/S0167-7799(97)01067-6","volume":"15","author":"H. Bonarius","year":"1997","unstructured":"Bonarius, H., Schmid, G., Tramper, J.: Flux analysis of underdetermined metabolic networks: the quest for the missing constraints. Trends Biotechnol.\u00a015(8), 308\u2013314 (1997)","journal-title":"Trends Biotechnol."},{"issue":"5","key":"22_CR6","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1016\/j.copbio.2003.08.001","volume":"14","author":"K. Kauffman","year":"2004","unstructured":"Kauffman, K., Prakash, P., Edwards, J.: Advances in flux balance analysis. Curr. Opin. Biotechnol.\u00a014(5), 491\u2013496 (2004)","journal-title":"Curr. Opin. Biotechnol."},{"issue":"2","key":"22_CR7","doi-asserted-by":"publisher","first-page":"140","DOI":"10.1093\/bib\/bbl007","volume":"7","author":"J. Lee","year":"2006","unstructured":"Lee, J., Gianchandani, E., Papin, J.: Flux balance analysis in the era of metabolomics. Brief. Bioinformatics\u00a07(2), 140\u2013150 (2006)","journal-title":"Brief. Bioinformatics"},{"key":"22_CR8","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1038\/msb4100162","volume":"3","author":"R. Schuetz","year":"2007","unstructured":"Schuetz, R., Kuepfer, L., Sauer, U.: Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol. Syst. Biol.\u00a03, 119 (2007)","journal-title":"Mol. Syst. Biol."},{"key":"22_CR9","doi-asserted-by":"publisher","first-page":"711","DOI":"10.1016\/S0098-1354(00)00323-9","volume":"24","author":"S. Lee","year":"2000","unstructured":"Lee, S., Phalakornkule, C., Grossmann, I.E., Domach, M.M.: Recursive MILP model for finding all the alternate optima in LP models for metabolic networks. Comput. Chem. Eng.\u00a024, 711\u2013716 (2000)","journal-title":"Comput. Chem. Eng."},{"key":"22_CR10","doi-asserted-by":"crossref","unstructured":"Larhlimi, A., Bockmayr, A.: A new constraint-based description of the steady-state flux cone of metabolic networks. Discrete Applied Mathematics (to appear, 2008)","DOI":"10.1016\/j.dam.2008.06.039"},{"issue":"5","key":"22_CR11","doi-asserted-by":"publisher","first-page":"250","DOI":"10.1016\/S0968-0004(03)00064-1","volume":"28","author":"J. Papin","year":"2003","unstructured":"Papin, J., Price, N., Wiback, S., Fell, D., Palsson, B.: Metabolic pathways in the post-genome era. Trends Biochem. Sci.\u00a028(5), 250\u2013258 (2003)","journal-title":"Trends Biochem. Sci."},{"issue":"8","key":"22_CR12","doi-asserted-by":"publisher","first-page":"400","DOI":"10.1016\/j.tibtech.2004.06.010","volume":"22","author":"J. Papin","year":"2004","unstructured":"Papin, J., Stelling, J., Price, N., Klamt, S., Schuster, S., Palsson, B.: Comparison of network-based pathway analysis methods. Trends Biotechnol.\u00a022(8), 400\u2013405 (2004)","journal-title":"Trends Biotechnol."},{"issue":"6","key":"22_CR13","doi-asserted-by":"publisher","first-page":"3837","DOI":"10.1529\/biophysj.104.055129","volume":"89","author":"C. Wagner","year":"2005","unstructured":"Wagner, C., Urbanczik, R.: The geometry of the flux cone of a metabolic network. Biophys. J.\u00a089(6), 3837\u20133845 (2005)","journal-title":"Biophys. J."},{"key":"22_CR14","volume-title":"Theory of Linear and Integer Programming","author":"A. Schrijver","year":"1986","unstructured":"Schrijver, A.: Theory of Linear and Integer Programming. Wiley, Chichester (1986)"},{"key":"22_CR15","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1002\/9780470142622.ch1","volume-title":"Advances in Chemical Physics","author":"B. Clarke","year":"1980","unstructured":"Clarke, B.: Stability of complex reaction networks. In: Prigogine, I., Rice, S. (eds.) Advances in Chemical Physics, vol.\u00a043, pp. 1\u2013216. John Wiley & Sons, Chichester (1980)"},{"issue":"3","key":"22_CR16","doi-asserted-by":"publisher","first-page":"229","DOI":"10.1006\/jtbi.2000.1073","volume":"203","author":"C. Schilling","year":"2000","unstructured":"Schilling, C., Letscher, D., Palsson, B.: Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theor. Biol.\u00a0203(3), 229\u2013248 (2000)","journal-title":"J. Theor. Biol."},{"issue":"3","key":"22_CR17","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1016\/S0303-2647(03)00067-4","volume":"70","author":"T. Dandekar","year":"2003","unstructured":"Dandekar, T., Moldenhauer, F., Bulik, S., Bertram, H., Schuster, S.: A method for classifying metabolites in topological pathway analyses based on minimization of pathway number. BioSystems\u00a070(3), 255\u2013270 (2003)","journal-title":"BioSystems"},{"issue":"2","key":"22_CR18","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1142\/S0218339094000131","volume":"2","author":"S. Schuster","year":"1994","unstructured":"Schuster, S., Hilgetag, C.: On elementary flux modes in biochemical reaction systems at steady state. J. Biol. Syst.\u00a02(2), 165\u2013182 (1994)","journal-title":"J. Biol. Syst."},{"issue":"10","key":"22_CR19","doi-asserted-by":"publisher","first-page":"4970","DOI":"10.1063\/1.441885","volume":"75","author":"B. Clarke","year":"1981","unstructured":"Clarke, B.: Complete set of steady states for the general stoichiometric dynamical system. J. Chem. Phys.\u00a075(10), 4970\u20134979 (1981)","journal-title":"J. Chem. Phys."},{"issue":"2","key":"22_CR20","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1007\/s002850200143","volume":"45","author":"S. Schuster","year":"2002","unstructured":"Schuster, S., Hilgetag, C., Woods, J., Fell, D.: Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism. J. Math. Biol.\u00a045(2), 153\u2013181 (2002)","journal-title":"J. Math. Biol."},{"key":"22_CR21","unstructured":"Heiner, M., Koch, I., Voss, K.: Analysis and simulation of steady states in metabolic pathways with Petri nets. In: Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools, CPN 2001, Aarhus University, Denmark, pp. 15\u201334 (2001)"},{"key":"22_CR22","unstructured":"Schuster, S., Pfeiffer, T., Moldenhauer, F., Koch, I., Dandekar, T.: Structural analysis of metabolic networks: elementary flux modes, analogy to Petri nets, and application to Mycoplasma pneumoniae. In: German Conference on Bioinformatics, GCB 2000, Heidelberg, Germany, pp. 115\u2013120. Logos Verlag (2000)"},{"key":"22_CR23","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1186\/1471-2105-7-56","volume":"7","author":"S. Klamt","year":"2006","unstructured":"Klamt, S., Saez-Rodriguez, J., Lindquist, J., Simeoni, L., Gilles, E.: A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics\u00a07, 56 (2006)","journal-title":"BMC Bioinformatics"},{"key":"22_CR24","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1016\/S0167-7799(02)00034-3","volume":"21","author":"S. Klamt","year":"2003","unstructured":"Klamt, S., Stelling, J.: Two approaches for metabolic pathway analysis? Trends Biotechnol.\u00a021, 64\u201369 (2003)","journal-title":"Trends Biotechnol."},{"issue":"5","key":"22_CR25","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/S0167-7799(03)00080-5","volume":"21","author":"B. Palsson","year":"2003","unstructured":"Palsson, B., Price, N., Papin, J.: Development of network-based pathway definitions: the need to analyze real metabolic networks. Trends Biotechnol.\u00a021(5), 195\u2013198 (2003)","journal-title":"Trends Biotechnol."},{"key":"22_CR26","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1186\/1471-2105-5-175","volume":"5","author":"J. Gagneur","year":"2004","unstructured":"Gagneur, J., Klamt, S.: Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinformatics\u00a05, 175 (2004)","journal-title":"BMC Bioinformatics"},{"key":"22_CR27","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1007\/11875741_20","volume-title":"Computational Life Sciences II","author":"A. Larhlimi","year":"2006","unstructured":"Larhlimi, A., Bockmayr, A.: A new approach to flux coupling analysis of metabolic networks. In: Berthold, M.R., Glen, R.C., Fischer, I. (eds.) CompLife 2006. LNCS (LNBI), vol.\u00a04216, pp. 205\u2013215. Springer, Heidelberg (2006)"},{"key":"22_CR28","doi-asserted-by":"crossref","unstructured":"Larhlimi, A., Bockmayr, A.: Minimal direction cuts in metabolic networks. In: Computational Life Sciences III, CompLife 2007, Utrecht, The Netherlands. American Institute of Physics Conference Series, vol.\u00a0940, pp. 73\u201386 (2007)","DOI":"10.1063\/1.2793406"},{"key":"22_CR29","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1007\/3-540-61576-8_77","volume-title":"Combinatorics and Computer Science","author":"K. Fukuda","year":"1996","unstructured":"Fukuda, K., Prodon, A.: Double description method revisited. In: Deza, M., Manoussakis, I., Euler, R. (eds.) CCS 1995. LNCS, vol.\u00a01120, pp. 91\u2013111. Springer, Heidelberg (1996)"},{"issue":"3","key":"22_CR30","doi-asserted-by":"publisher","first-page":"430","DOI":"10.1046\/j.1432-1033.2003.03390.x","volume":"270","author":"M. Poolman","year":"2003","unstructured":"Poolman, M., Fell, D., Raines, C.: Elementary modes analysis of photosynthate metabolism in the chloroplast stroma. Eur. J. Biochem.\u00a0270(3), 430\u2013439 (2003)","journal-title":"Eur. J. Biochem."},{"issue":"2","key":"22_CR31","doi-asserted-by":"publisher","first-page":"808","DOI":"10.1016\/S0006-3495(02)75210-7","volume":"83","author":"S. Wiback","year":"2002","unstructured":"Wiback, S., Palsson, B.: Extreme pathway analysis of human red blood cell metabolism. Biophys. J.\u00a083(2), 808\u2013818 (2002)","journal-title":"Biophys. J."},{"key":"22_CR32","doi-asserted-by":"crossref","unstructured":"Cakir, T., Tekir, D., \u00d6nsan, Z., Kutlu, U., Nielsen, J.: Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae. BMC Syst. Biol.\u00a018(1) (2007)","DOI":"10.1186\/1752-0509-1-18"},{"key":"22_CR33","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1186\/1752-0509-1-2","volume":"1","author":"S. Klamt","year":"2007","unstructured":"Klamt, S., Saez-Rodriguez, J., Gilles, E.: Structural and functional analysis of cellular networks with cellnetanalyzer. BMC Syst. Biol.\u00a01, 2 (2007)","journal-title":"BMC Syst. Biol."},{"issue":"15","key":"22_CR34","first-page":"1930","volume":"22","author":"A. Kamp von","year":"2006","unstructured":"von Kamp, A., Schuster, S.: Metatool 5. 0: fast and flexible elementary modes analysis. Bioinformatics\u00a022(15), 1930\u20131931 (2006)","journal-title":"0: fast and flexible elementary modes analysis. Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Computational Methods in Systems Biology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-88562-7_22","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,14]],"date-time":"2019-05-14T12:01:12Z","timestamp":1557835272000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-88562-7_22"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008]]},"ISBN":["9783540885610","9783540885627"],"references-count":34,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-88562-7_22","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2008]]}}}