{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T11:35:46Z","timestamp":1725536146120},"publisher-location":"Berlin, Heidelberg","reference-count":22,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540888680"},{"type":"electronic","value":"9783540888697"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009]]},"DOI":"10.1007\/978-3-540-88869-7_3","type":"book-chapter","created":{"date-parts":[[2009,8,12]],"date-time":"2009-08-12T21:41:55Z","timestamp":1250113315000},"page":"31-42","source":"Crossref","is-referenced-by-count":0,"title":["Information Content of Sets of Biological Sequences Revisited"],"prefix":"10.1007","author":[{"given":"Alessandra","family":"Carbone","sequence":"first","affiliation":[]},{"given":"Stefan","family":"Engelen","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2009,8,13]]},"reference":[{"key":"3_CR1","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1016\/S0167-2789(99)00179-7","volume":"137","author":"C Adami","year":"2000","unstructured":"Adami C, Cerf NJ (2000) Physical complexity of symbolic sequences. Physica D 137:62\u201369","journal-title":"Physica D"},{"issue":"3","key":"3_CR2","first-page":"389","volume":"25","author":"SF Altschul","year":"1997","unstructured":"Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25(3):389\u20133402","journal-title":"Nucleic Acids Res"},{"key":"3_CR3","unstructured":"Baussand J (2008) \u00c9volution des s\u00e9quences prot\u00e9iques: signatures structurales hydrophobes et r\u00e9seaux d\u2019acides amin\u00e9s co-\u00e9volu\u00e9s. Th\u00e8se de Doctorat de l\u2019Universit\u00e9 Pierre et Marie Curie-Paris 6"},{"key":"3_CR4","doi-asserted-by":"publisher","first-page":"190","DOI":"10.1110\/ps.03323604","volume":"13","author":"DR Caffrey","year":"2004","unstructured":"Caffrey DR, Somaroo S, Hughes JH, Mintseris J, Huang ES (2004) Are protein\u2013protein interfaces more conserved in sequence than the rest of the protein surface? Protein Sci 13:190\u2013189","journal-title":"Protein Sci"},{"key":"3_CR5","doi-asserted-by":"publisher","first-page":"5130","DOI":"10.1021\/ja031504a","volume":"126","author":"JM Carothers","year":"2004","unstructured":"Carothers JM, Oestreich SC, Davis JH, Szostak JW (2004) Informational complexity and functional activity of RNA structures. J Am Chem Soc 126:5130\u20135137","journal-title":"J Am Chem Soc"},{"key":"3_CR6","volume-title":"Bioinformatics sequence structure and databanks","author":"L Duret","year":"2000","unstructured":"Duret L, Abdeddaim S (2000) Multiple alignment for structural functional or phylogenetic analyses of homologous sequences. In: Higgins D, Taylor W (eds) Bioinformatics sequence structure and databanks. Oxford University Press, Oxford"},{"issue":"1","key":"3_CR7","doi-asserted-by":"publisher","first-page":"e1000267","DOI":"10.1371\/journal.pcbi.1000267","volume":"5","author":"S Engelen","year":"2009","unstructured":"Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A (2009) JET: detection and analysis of protein interfaces based on evolution. PLOS Comput Biol 5(1):e1000267, 1\u201317","journal-title":"PLOS Comput Biol"},{"key":"3_CR8","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1016\/S0378-1119(01)00461-9","volume":"270","author":"O Lecompte","year":"2001","unstructured":"Lecompte O, Thompson JD, Plewniak F, Thierry J, Poch O (2001) Multiple alignment of complete sequences (MACS) in the post-genomic era. Gene 270:17\u201330","journal-title":"Gene"},{"key":"3_CR9","doi-asserted-by":"publisher","first-page":"295","DOI":"10.1126\/science.286.5438.295","volume":"286","author":"S Lockless","year":"1999","unstructured":"Lockless S, Ranganathan R (1999) Evolutionary conserved pathways of energetic connectivity in protein families. Science 286:295\u2013299","journal-title":"Science"},{"key":"3_CR10","doi-asserted-by":"publisher","first-page":"1265","DOI":"10.1016\/j.jmb.2003.12.078","volume":"336","author":"I Mihalek","year":"2004","unstructured":"Mihalek I, Re\u0161 I, Lichtarge O (2004) A family of evolution-entropy hybrid methods for ranking protein residues by importance. J Mol Biol 336:1265\u20131282","journal-title":"J Mol Biol"},{"key":"3_CR11","doi-asserted-by":"publisher","first-page":"285","DOI":"10.1016\/j.sbi.2005.05.011","volume":"15","author":"J Moult","year":"2005","unstructured":"Moult J (2005) A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction. Curr Opin Struct Biol 15:285\u2013289","journal-title":"Curr Opin Struct Biol"},{"key":"3_CR12","doi-asserted-by":"publisher","first-page":"131","DOI":"10.1517\/14622416.3.1.131","volume":"31","author":"C Notredame","year":"2002","unstructured":"Notredame C (2002) Recent progresses in multiple sequence alignment: a survey. Pharmacogenomics 31:131\u2013144","journal-title":"Pharmacogenomics"},{"key":"3_CR13","doi-asserted-by":"publisher","first-page":"e123","DOI":"10.1371\/journal.pcbi.0030123","volume":"8","author":"C Notredame","year":"2007","unstructured":"Notredame C (2007) Recent evolutions of multiple sequence alignment algorithms. PLOS Comput Biol 8:e123","journal-title":"PLOS Comput Biol"},{"key":"3_CR14","doi-asserted-by":"publisher","first-page":"317","DOI":"10.1006\/mpev.2000.0785","volume":"16","author":"A Phillips","year":"2000","unstructured":"Phillips A, Janies D, Wheeler W (2000) Multiple sequence alignment in phylogenetic analysis. Mol Phylogenet Evol 16:317\u2013330","journal-title":"Mol Phylogenet Evol"},{"issue":"7","key":"3_CR15","doi-asserted-by":"publisher","first-page":"1092","DOI":"10.1002\/jcc.20870","volume":"29","author":"M Schmidt Am Busch","year":"2007","unstructured":"Schmidt Am Busch M, Lopes A, Mignon D, Simonson T (2007) Computational protein design: software implementation, parameter optimization, and performance of a simple model. J Comput Chem 29(7):1092\u20131102","journal-title":"J Comput Chem"},{"key":"3_CR16","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1038\/nsb881","volume":"23","author":"G Suel","year":"2003","unstructured":"Suel G, Lockless S, Wall M, Ranganthan R (2003) Evolutionary conserved networks of residues mediate allosteric communication in proteins. Nat Struct Biol 23:59\u201369","journal-title":"Nat Struct Biol"},{"key":"3_CR17","doi-asserted-by":"publisher","first-page":"9661","DOI":"10.1021\/bi00030a002","volume":"34","author":"S Sugio","year":"1995","unstructured":"Sugio S, Petsko GA, Manning JM, Soda K, Ringe D (1995) Crystal structure of a D-amino acid aminotransferase: how the protein controls stereoselectivity. Biochemistry 34:9661\u20139669","journal-title":"Biochemistry"},{"key":"3_CR18","doi-asserted-by":"publisher","first-page":"12682","DOI":"10.1093\/nar\/27.13.2682","volume":"27","author":"JD Thompson","year":"1999","unstructured":"Thompson JD, Plewniak F, Poch O (1999) A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res 27:12682\u201312690","journal-title":"Nucleic Acids Res"},{"key":"3_CR19","doi-asserted-by":"publisher","first-page":"261","DOI":"10.1016\/j.sbi.2005.04.002","volume":"15","author":"IM Wallace","year":"2005","unstructured":"Wallace IM, Blackshields G, Higgins DG (2005) Multiple sequence alignments. Curr Opin Struct Biol 15:261\u2013266","journal-title":"Curr Opin Struct Biol"},{"key":"3_CR20","doi-asserted-by":"publisher","first-page":"275","DOI":"10.1016\/j.sbi.2005.04.003","volume":"15","author":"JD Watson","year":"2005","unstructured":"Watson JD, Laskowski RA, Thornton JM (2005) Predicting protein function from sequence and structural data. Curr Opin Struct Biol 15:275\u2013284","journal-title":"Curr Opin Struct Biol"},{"key":"3_CR21","doi-asserted-by":"publisher","first-page":"614","DOI":"10.1093\/nar\/gkl1036","volume":"35","author":"A Xayaphoummine","year":"2007","unstructured":"Xayaphoummine A, Viasnoff V, Harlepp S, Isambert H (2007) Encoding folding paths of RNA switches. Nucleic Acids Res 35:614\u2013622","journal-title":"Nucleic Acids Res"},{"key":"3_CR22","doi-asserted-by":"publisher","first-page":"202","DOI":"10.1016\/j.sbi.2004.03.001","volume":"14","author":"Y Xia","year":"2004","unstructured":"Xia Y, Levitt M (2004) Simulating protein evolution in sequence and structure space. Curr Opin Struct Biol 14:202\u2013207","journal-title":"Curr Opin Struct Biol"}],"container-title":["Natural Computing Series","Algorithmic Bioprocesses"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-88869-7_3.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,4,27]],"date-time":"2021-04-27T12:11:58Z","timestamp":1619525518000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-88869-7_3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009]]},"ISBN":["9783540888680","9783540888697"],"references-count":22,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-88869-7_3","relation":{},"ISSN":["1619-7127"],"issn-type":[{"type":"print","value":"1619-7127"}],"subject":[],"published":{"date-parts":[[2009]]}}}