{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T07:35:35Z","timestamp":1725521735156},"publisher-location":"Berlin, Heidelberg","reference-count":39,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540891963"},{"type":"electronic","value":"9783540891970"}],"license":[{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008]]},"DOI":"10.1007\/978-3-540-89197-0_73","type":"book-chapter","created":{"date-parts":[[2008,12,3]],"date-time":"2008-12-03T12:23:50Z","timestamp":1228307030000},"page":"788-798","source":"Crossref","is-referenced-by-count":5,"title":["Prediction of Protein Functions from Protein Interaction Networks: A Na\u00efve Bayes Approach"],"prefix":"10.1007","author":[{"given":"Cao D.","family":"Nguyen","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Katheleen J.","family":"Gardiner","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Duong","family":"Nguyen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Krzysztof J.","family":"Cios","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"73_CR1","doi-asserted-by":"publisher","first-page":"4285","DOI":"10.1073\/pnas.96.8.4285","volume":"96","author":"M. Pellegrini","year":"1999","unstructured":"Pellegrini, M., Marcotte, E., Thompson, M., Eisenberg, D., Yeates, T.: Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl Acad. Sci. USA\u00a096, 4285\u20134288 (1999)","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"73_CR2","doi-asserted-by":"publisher","first-page":"2246","DOI":"10.1126\/science.1103330","volume":"306","author":"P. Bowers","year":"2004","unstructured":"Bowers, P., Cokus, S., Eisenberg, D., Yeates, T.: Use of logic relationships to decipher protein network organisation. Science\u00a0306, 2246\u20132259 (2004)","journal-title":"Science"},{"key":"73_CR3","doi-asserted-by":"publisher","first-page":"1331","DOI":"10.1016\/j.jmb.2004.10.019","volume":"344","author":"P. Pagel","year":"2004","unstructured":"Pagel, P., Wong, P., Frishman, D.: A domain interaction map based on phylogenetic profiling. J. Mol. Biol.\u00a0344, 1331\u20131346 (2004)","journal-title":"J. Mol. Biol."},{"key":"73_CR4","doi-asserted-by":"publisher","first-page":"3409","DOI":"10.1093\/bioinformatics\/bti532","volume":"21","author":"J. Sun","year":"2005","unstructured":"Sun, J., Xu, J., Liu, Z., Liu, Q., Zhao, A., Shi, T., Li, Y.: Refined phylogenetic profiles method for predicting protein\u2013protein interactions. Bioinformatics\u00a021, 3409\u20133415 (2005)","journal-title":"Bioinformatics"},{"issue":"11","key":"73_CR5","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1371\/journal.pcbi.0030237","volume":"3","author":"J. Ranea","year":"2007","unstructured":"Ranea, J., Yeats, C., Grant, A., Orengo, C.: Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes. PLoS Comput. Biol.\u00a03(11), e237 (2007)","journal-title":"PLoS Comput. Biol."},{"key":"73_CR6","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1038\/47048","volume":"402","author":"E. Marcotte","year":"1999","unstructured":"Marcotte, E., Pellegrini, M., Thompson, M., Yeates, T., Eisenberg, D.: A combined algorithm for genome-wide prediction of protein function. Nature\u00a0402, 83\u201386 (1999)","journal-title":"Nature"},{"key":"73_CR7","doi-asserted-by":"publisher","first-page":"12783","DOI":"10.1073\/pnas.192159399","volume":"99","author":"X. Zhou","year":"2002","unstructured":"Zhou, X., Kao, M., Wong, W.: Transitive functional annotation by shortest-path analysis of gene expression data. Proc Natl. Acad. Sci. USA\u00a099, 12783\u201312788 (2002)","journal-title":"Proc Natl. Acad. Sci. USA"},{"key":"73_CR8","doi-asserted-by":"publisher","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","volume":"25","author":"S. Altschul","year":"1997","unstructured":"Altschul, S., Madden, T., Schaffer, A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res.\u00a025, 3389\u20133402 (1997)","journal-title":"Nucleic Acids Res."},{"key":"73_CR9","doi-asserted-by":"publisher","first-page":"751","DOI":"10.1126\/science.285.5428.751","volume":"285","author":"E. Marcotte","year":"1999","unstructured":"Marcotte, E., Pellegrini, M., Ng, H., Rice, D., Yeates, T., Eisenberg, D.: Detecting protein function and protein\u2013protein interactions from genome sequences. Science\u00a0285, 751\u2013753 (1999)","journal-title":"Science"},{"key":"73_CR10","doi-asserted-by":"publisher","first-page":"8348","DOI":"10.1073\/pnas.0832373100","volume":"100","author":"O. Troyanskaya","year":"2003","unstructured":"Troyanskaya, O., Dolinski, K., Owen, A., Altman, R., Botstein, D.: A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc. Natl. Acad. Sci. USA\u00a0100, 8348\u20138353 (2003)","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"73_CR11","doi-asserted-by":"publisher","first-page":"2753","DOI":"10.1093\/bioinformatics\/btl475","volume":"22","author":"D. Lewis","year":"2006","unstructured":"Lewis, D., Jebara, T., Noble, W.: Support vector machine learning from heterogeneous data: an empirical analysis using protein sequence and structure. Bioinformatics\u00a022, 2753\u20132760 (2006)","journal-title":"Bioinformatics"},{"key":"73_CR12","doi-asserted-by":"publisher","first-page":"540","DOI":"10.1126\/science.1091403","volume":"303","author":"S. Li","year":"2004","unstructured":"Li, S., et al.: A map of the interactome network of the metazoan C.elegans. Science\u00a0303, 540\u2013543 (2004)","journal-title":"Science"},{"key":"73_CR13","doi-asserted-by":"publisher","first-page":"1727","DOI":"10.1126\/science.1090289","volume":"302","author":"L. Giot","year":"2003","unstructured":"Giot, L., et al.: A protein interaction map of Drosophila melanogaster. Science\u00a0302, 1727\u20131736 (2003)","journal-title":"Science"},{"key":"73_CR14","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1038\/ng0797-277","volume":"16","author":"M. Fromont-Racine","year":"1997","unstructured":"Fromont-Racine, M., et al.: Toward a functional analysis of the yeast genome through exhaustive Y2H screens. Nat. Genet.\u00a016, 277\u2013282 (1997)","journal-title":"Nat. Genet."},{"key":"73_CR15","doi-asserted-by":"publisher","first-page":"1257","DOI":"10.1038\/82360","volume":"18","author":"B. Schwikowski","year":"2000","unstructured":"Schwikowski, B., Uetz, P., Fields, S.: A network of protein-protein interactions in yeast. Nature Biotechnology\u00a018, 1257\u20131261 (2000)","journal-title":"Nature Biotechnology"},{"key":"73_CR16","doi-asserted-by":"publisher","first-page":"623","DOI":"10.1038\/35001009","volume":"403","author":"P. Uetz","year":"2000","unstructured":"Uetz, P., et al.: A comprehensive analysis of protein\u2013protein interactions in Saccharomyces cerevisiae. Nature\u00a0403, 623\u2013627 (2000)","journal-title":"Nature"},{"key":"73_CR17","doi-asserted-by":"publisher","first-page":"180","DOI":"10.1038\/415180a","volume":"415","author":"Y. Ho","year":"2002","unstructured":"Ho, Y., et al.: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature\u00a0415, 180\u2013183 (2002)","journal-title":"Nature"},{"key":"73_CR18","doi-asserted-by":"publisher","first-page":"2363","DOI":"10.1101\/gr.1680803","volume":"13","author":"S. Peri","year":"2003","unstructured":"Peri, S., et al.: Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Research\u00a013, 2363\u20132371 (2003)","journal-title":"Genome Research"},{"key":"73_CR19","doi-asserted-by":"publisher","first-page":"1623","DOI":"10.1093\/bioinformatics\/btl145","volume":"22","author":"H. Chua","year":"2006","unstructured":"Chua, H., Sung, W., Wong, L.: Exploiting indirect neighbours and topological weight to predict protein function from protein\u2013protein interactions. Bioinformatics\u00a022, 1623\u20131630 (2006)","journal-title":"Bioinformatics"},{"key":"73_CR20","doi-asserted-by":"publisher","first-page":"523","DOI":"10.1002\/yea.706","volume":"18","author":"H. Hishigaki","year":"2001","unstructured":"Hishigaki, H., Nakai, K., Ono, T., Tanigami, A., Takagi, T.: Assessment of prediction accuracy of protein function from protein-protein interaction data. Yeast\u00a018, 523\u2013531 (2001)","journal-title":"Yeast"},{"key":"73_CR21","doi-asserted-by":"publisher","first-page":"947","DOI":"10.1089\/106652703322756168","volume":"10","author":"M. Deng","year":"2003","unstructured":"Deng, M., Zhang, K., Mehta, S., Chen, T., Sun, F.: Prediction of protein function using protein-protein interaction data. Journal of Computational Biology\u00a010, 947\u2013960 (2003)","journal-title":"Journal of Computational Biology"},{"key":"73_CR22","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1093\/bioinformatics\/btg1026","volume":"19","author":"S. Letovsky","year":"2003","unstructured":"Letovsky, S., Kasif, S.: Predicting protein function from protein\/protein interaction data: a probabilistic approach. Bioinformatics\u00a019, 197\u2013204 (2003)","journal-title":"Bioinformatics"},{"key":"73_CR23","doi-asserted-by":"crossref","unstructured":"Vazquez, A., Flammi, A., Maritan, A., Vespignani, A.: Global protein function prediction from protein-protein interaction networks. Nature Biotechnology\u00a021(6), 697\u2013670 (2003)","DOI":"10.1038\/nbt825"},{"key":"73_CR24","doi-asserted-by":"publisher","first-page":"302","DOI":"10.1093\/bioinformatics\/bti1054","volume":"21","author":"E. Nabieva","year":"2005","unstructured":"Nabieva, E., Jim, K., Agarwal, A., Chazelle, B., Singh, M.: Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. Bioinformatics\u00a021, 302\u2013310 (2005)","journal-title":"Bioinformatics"},{"issue":"1","key":"73_CR25","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1142\/S0219720008003333","volume":"6","author":"C. Nguyen","year":"2008","unstructured":"Nguyen, C., Mannino, M., Gardiner, K., Cios, K.: ClusFCM: An algorithm for predicting protein functions using homologies and protein interactions. J. Bioinform. Comput. Biol.\u00a06(1), 203\u2013222 (2008)","journal-title":"J. Bioinform. Comput. Biol."},{"key":"73_CR26","doi-asserted-by":"publisher","first-page":"463","DOI":"10.1089\/1066527041410346","volume":"11","author":"M. Deng","year":"2004","unstructured":"Deng, M., Chen, T., Sun, F.: An integrated probabilistic model for functional prediction of proteins. Journal of Computational Biology\u00a011, 463\u2013475 (2004)","journal-title":"Journal of Computational Biology"},{"issue":"3","key":"73_CR27","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1371\/journal.pone.0000337","volume":"2","author":"N. Nariai","year":"2007","unstructured":"Nariai, N., Kolaczyk, E.D., Kasif, S.: Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data. PLoS ONE\u00a02(3), 337, e337.doi:10.1371\/journal.pone.0000337,(2007)","journal-title":"PLoS ONE"},{"key":"73_CR28","doi-asserted-by":"publisher","first-page":"535","DOI":"10.1093\/nar\/gkj109","volume":"34","author":"C. Stark","year":"2006","unstructured":"Stark, C., Breitkreutz, B.J., Reguly, T., Boucher, L., Breitkreutz, A., Tyers, M.: BioGRID: a general repository for interaction datasets. Nucleic Acids Res.\u00a034, D535\u2013D539 (2006)","journal-title":"Nucleic Acids Res."},{"key":"73_CR29","doi-asserted-by":"publisher","first-page":"919","DOI":"10.1016\/S0022-2836(03)00239-0","volume":"327","author":"E. Sprinzak","year":"2003","unstructured":"Sprinzak, E., Sattath, S., Margalit, H.: How reliable are experimental protein\u2013protein interaction data? Journal of Molecular Biology\u00a0327, 919\u2013923 (2003)","journal-title":"Journal of Molecular Biology"},{"key":"73_CR30","first-page":"25","volume":"25","author":"M. Ashburner","year":"2000","unstructured":"Ashburner, M., et al.: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet.\u00a025, 25\u201329 (2000)","journal-title":"The Gene Ontology Consortium. Nat. Genet."},{"issue":"2","key":"73_CR31","doi-asserted-by":"publisher","first-page":"206","DOI":"10.1101\/gr.6888208","volume":"18","author":"L. Yao","year":"2008","unstructured":"Yao, L., Rzhetsky, A.: Quantitative systems-level determinants of human genes targeted by successful drugs. Genome Res.\u00a018(2), 206\u2013213 (2008)","journal-title":"Genome Res."},{"key":"73_CR32","first-page":"67","volume-title":"Proceedings of the Second European Working Session on Learning","author":"T. Niblett","year":"1987","unstructured":"Niblett, T.: Constructing decision trees in noisy domains. In: Proceedings of the Second European Working Session on Learning, pp. 67\u201378. Sigma, Bled, Yugoslavia (1987)"},{"key":"73_CR33","unstructured":"van Rijsbergen, C.: Information retrieval: theory and practice. In: Proceedings of the Joint IBM\/University of Newcastle upon Tyne Seminar on Data Base Systems, pp. 1\u201314 (1979)"},{"key":"73_CR34","doi-asserted-by":"publisher","first-page":"412","DOI":"10.1093\/bioinformatics\/16.5.412","volume":"16","author":"P. Baldi","year":"2000","unstructured":"Baldi, P., Brunak, S., Chauvin, Y., Andersen, C.: Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics\u00a016, 412\u2013424 (2000)","journal-title":"Bioinformatics"},{"issue":"1","key":"73_CR35","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1109\/TSMCB.2005.852983","volume":"36","author":"L. Kurgan","year":"2006","unstructured":"Kurgan, L., Cios, K., Scott, D.: Highly Scalable and Robust Rule Learner: Performance Evaluation and Comparison. IEEE Transactions on Systems Man and Cybernetics, Part B\u00a036(1), 32\u201353 (2006)","journal-title":"IEEE Transactions on Systems Man and Cybernetics, Part B"},{"issue":"1-3","key":"73_CR36","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1016\/j.ins.2003.03.015","volume":"163","author":"K. Cios","year":"2004","unstructured":"Cios, K., Kurgan, L.: CLIP4: Hybrid Inductive Machine Learning Algorithm that Generates Inequality Rules. Information Sciences\u00a0163(1-3), 37\u201383 (2004)","journal-title":"Information Sciences"},{"key":"73_CR37","volume-title":"Data Mining A Knowledge Discovery Approach","author":"K. Cios","year":"2007","unstructured":"Cios, K., Pedrycz, W., Swiniarski, R., Kurgan, L.: Data Mining A Knowledge Discovery Approach. Springer, Heidelberg (2007)"},{"key":"73_CR38","doi-asserted-by":"crossref","unstructured":"Agrawal, R., Imielinski, T., Swami, A.: Mining Association Rules Between Sets of Items in Large Databases. In: SIGMOD Conference, pp. 207\u2013216 (1993)","DOI":"10.1145\/170035.170072"},{"key":"73_CR39","volume-title":"Information Processing 74","author":"W. Armstrong","year":"1974","unstructured":"Armstrong, W.: Dependency Structures of Data Base Relationships. In: Information Processing 74. North Holland, Amsterdam (1974)"}],"container-title":["Lecture Notes in Computer Science","PRICAI 2008: Trends in Artificial Intelligence"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-89197-0_73","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,15]],"date-time":"2019-05-15T23:19:01Z","timestamp":1557962341000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-89197-0_73"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008]]},"ISBN":["9783540891963","9783540891970"],"references-count":39,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-89197-0_73","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2008]]}}}