{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T10:08:06Z","timestamp":1725530886906},"publisher-location":"Berlin, Heidelberg","reference-count":30,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642007262"},{"type":"electronic","value":"9783642007279"}],"license":[{"start":{"date-parts":[[2009,1,1]],"date-time":"2009-01-01T00:00:00Z","timestamp":1230768000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009]]},"DOI":"10.1007\/978-3-642-00727-9_17","type":"book-chapter","created":{"date-parts":[[2009,4,21]],"date-time":"2009-04-21T04:45:52Z","timestamp":1240289152000},"page":"164-175","source":"Crossref","is-referenced-by-count":0,"title":["Computational Protocol for Screening GPI-anchored Proteins"],"prefix":"10.1007","author":[{"given":"Wei","family":"Cao","sequence":"first","affiliation":[]},{"given":"Kazuya","family":"Sumikoshi","sequence":"additional","affiliation":[]},{"given":"Tohru","family":"Terada","sequence":"additional","affiliation":[]},{"given":"Shugo","family":"Nakamura","sequence":"additional","affiliation":[]},{"given":"Katsuhiko","family":"Kitamoto","sequence":"additional","affiliation":[]},{"given":"Kentaro","family":"Shimizu","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"17_CR1","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1038\/353076a0","volume":"353","author":"S.K. Powell","year":"1991","unstructured":"Powell, S.K., Cunningham, B.A., Edelman, G.M., Rodriguez-Boulan, E.: Targeting of transmembrane and GPI-anchored forms of N-CAM to opposite domains of a polarized epithelial cell. Nature\u00a0353, 76\u201377 (1991)","journal-title":"Nature"},{"key":"17_CR2","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1016\/0005-2760(76)90087-4","volume":"450","author":"H. Ikezawa","year":"1976","unstructured":"Ikezawa, H., Yamanegi, M., Taguchi, R., Miyashita, T., Ohyabu, T.: Studies on phosphatidylinositol phosphodiesterase (phospholipase C type) of Bacillus cereus. I. purification, properties and phosphatase-releasing activity. Biochim. Biophys. Acta.\u00a0450, 154\u2013164 (1976)","journal-title":"Biochim. Biophys. Acta."},{"key":"17_CR3","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1083\/jcb.132.1.35","volume":"132","author":"S. Rijnboutt","year":"1996","unstructured":"Rijnboutt, S., Jansen, G., Posthuma, G., Hynes, J.B., Schornagel, J.H., Strous, G.J.: Endocytosis of GPI-linked membrane folate receptor-alpha. J. Cell Biol.\u00a0132, 35\u201347 (1996)","journal-title":"J. Cell Biol."},{"key":"17_CR4","doi-asserted-by":"publisher","first-page":"5043","DOI":"10.1021\/bi00136a600","volume":"31","author":"N. Stahl","year":"1992","unstructured":"Stahl, N., Baldwin, M.A., Hecker, R., Pan, K.M., Burlingame, A.L., Prusiner, S.B.: Glycosylinositol phospholipid anchors of the scrapie and cellular prion proteins contain sialic acid. Biochemistry\u00a031, 5043\u20135053 (1992)","journal-title":"Biochemistry"},{"key":"17_CR5","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1016\/0092-8674(90)90225-4","volume":"61","author":"N.R. Cashman","year":"1990","unstructured":"Cashman, N.R., Loertscher, R., Nalbantoglu, J., Shaw, I., Kascsak, R.J., Bolton, D.C., Bendheim, P.E.: Cellular isoform of the scrapie agent protein participates in lymphocyte activation. Cell\u00a061, 185\u2013192 (1990)","journal-title":"Cell"},{"key":"17_CR6","doi-asserted-by":"publisher","first-page":"571","DOI":"10.1016\/0076-6879(95)50098-7","volume":"250","author":"S. Udenfriend","year":"1995","unstructured":"Udenfriend, S., Kodukula, K.: Prediction of omega site in nascent precursor of glycosylphosphatidylinositol protein. Methods Enzymol.\u00a0250, 571\u2013582 (1995)","journal-title":"Methods Enzymol."},{"key":"17_CR7","doi-asserted-by":"publisher","first-page":"563","DOI":"10.1146\/annurev.bi.64.070195.003023","volume":"64","author":"S. Udenfriend","year":"1995","unstructured":"Udenfriend, S., Kodukula, K.: How glycosylphosphatidylinositol-anchored membrane proteins are made. Annu. Rev. Biochem.\u00a064, 563\u2013591 (1995)","journal-title":"Annu. Rev. Biochem."},{"key":"17_CR8","doi-asserted-by":"publisher","first-page":"1477","DOI":"10.1002\/(SICI)1097-0061(199712)13:15<1477::AID-YEA184>3.0.CO;2-L","volume":"13","author":"L.H. Caro","year":"1997","unstructured":"Caro, L.H., Tettelin, H., Vossen, J.H., Ram, A.F., van den Ende, H., Klis, F.M.: In silicio identification of glycosyl-phosphatidylinositol-anchored plasma-membrane and cell wall proteins of Saccharomyces cerevisiae. Yeast\u00a013, 1477\u20131489 (1997)","journal-title":"Yeast"},{"key":"17_CR9","doi-asserted-by":"publisher","first-page":"4683","DOI":"10.1093\/nar\/14.11.4683","volume":"14","author":"G. Heijne von","year":"1986","unstructured":"von Heijne, G.: A new method for predicting signal sequence cleavage sites. Nucleic Acids Res.\u00a014, 4683\u20134690 (1986)","journal-title":"Nucleic Acids Res."},{"key":"17_CR10","doi-asserted-by":"crossref","first-page":"10558","DOI":"10.1016\/S0021-9258(18)82235-9","volume":"268","author":"C. Nuoffer","year":"1993","unstructured":"Nuoffer, C., Horvath, A., Riezman, H.: Analysis of the sequence requirements for glycosylphosphatidylinositol anchoring of Saccharomyces cerevisiae Gas1 protein. J. Biol. Chem.\u00a0268, 10558\u201310563 (1993)","journal-title":"J. Biol. Chem."},{"key":"17_CR11","doi-asserted-by":"publisher","first-page":"781","DOI":"10.1002\/yea.1007","volume":"20","author":"P.W. Groot De","year":"2003","unstructured":"De Groot, P.W., Hellingwerf, K.J., Klis, F.M.: Genome-wide identification of fungal GPI proteins. Yeast\u00a020, 781\u2013796 (2003)","journal-title":"Yeast"},{"key":"17_CR12","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/protein\/10.1.1","volume":"10","author":"H. Nielsen","year":"1997","unstructured":"Nielsen, H., Engelbrecht, J., Brunak, S., von Heijne, G.: Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng.\u00a010, 1\u20136 (1997)","journal-title":"Protein Eng."},{"key":"17_CR13","doi-asserted-by":"publisher","first-page":"897","DOI":"10.1016\/S0888-7543(05)80111-9","volume":"14","author":"K. Nakai","year":"1992","unstructured":"Nakai, K., Kanehisa, M.: A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics\u00a014, 897\u2013911 (1992)","journal-title":"Genomics"},{"key":"17_CR14","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1016\/j.jmb.2004.01.025","volume":"337","author":"B. Eisenhaber","year":"2004","unstructured":"Eisenhaber, B., Schneider, G., Wildpaner, M., Eisenhaber, F.: A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe. J. Mol. Biol.\u00a0337, 243\u2013253 (2004)","journal-title":"J. Mol. Biol."},{"key":"17_CR15","doi-asserted-by":"publisher","first-page":"1846","DOI":"10.1093\/bioinformatics\/bti299","volume":"21","author":"N. Fankhauser","year":"2005","unstructured":"Fankhauser, N., Maser, P.: Identification of GPI anchor attachment signals by a Kohonen self-organizing map. Bioinformatics\u00a021, 1846\u20131852 (2005)","journal-title":"Bioinformatics"},{"key":"17_CR16","doi-asserted-by":"publisher","first-page":"1196","DOI":"10.1126\/science.2466338","volume":"243","author":"I.W. Caras","year":"1989","unstructured":"Caras, I.W., Weddell, G.N.: Signal Peptide for Protein Secretion Directing Glycophospholipid Membrane Anchor Attachment. Science\u00a0243, 1196\u20131198 (1989)","journal-title":"Science"},{"key":"17_CR17","doi-asserted-by":"publisher","first-page":"741","DOI":"10.1006\/jmbi.1999.3069","volume":"292","author":"B. Eisenhaber","year":"1999","unstructured":"Eisenhaber, B., Bork, P., Eisenhaber, F.: Prediction of potential GPI-modification sites in proprotein sequences. J. Mol. Biol.\u00a0292, 741\u2013758 (1999)","journal-title":"J. Mol. Biol."},{"key":"17_CR18","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4757-2440-0","volume-title":"The Nature of Statistical Learning Theory","author":"V.N. Vapnik","year":"1995","unstructured":"Vapnik, V.N.: The Nature of Statistical Learning Theory. Springer, New York (1995)"},{"key":"17_CR19","volume-title":"Statistical Learning Theory","author":"V.N. Vapnik","year":"1998","unstructured":"Vapnik, V.N.: Statistical Learning Theory. John Wiley & Sons, Inc., Chichester (1998)"},{"key":"17_CR20","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1093\/bioinformatics\/16.9.799","volume":"16","author":"A. Zien","year":"2000","unstructured":"Zien, A., Ratsch, G., Mika, S., Scholkopf, B., Lengauer, T., Muller, K.R.: Engineering support vector machine kernels that recognize translation initiation sites. Bioinformatics\u00a016, 799\u2013807 (2000)","journal-title":"Bioinformatics"},{"key":"17_CR21","doi-asserted-by":"publisher","first-page":"349","DOI":"10.1093\/bioinformatics\/17.4.349","volume":"17","author":"C.H. Ding","year":"2001","unstructured":"Ding, C.H., Dubchak, I.: Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics\u00a017, 349\u2013358 (2001)","journal-title":"Bioinformatics"},{"key":"17_CR22","doi-asserted-by":"publisher","first-page":"721","DOI":"10.1093\/bioinformatics\/17.8.721","volume":"17","author":"S.J. Hua","year":"2001","unstructured":"Hua, S.J., Sun, Z.R.: Support vector machine approach for protein subcellular localization prediction. Bioinformatics\u00a017, 721\u2013728 (2001)","journal-title":"Bioinformatics"},{"key":"17_CR23","unstructured":"Chang, C.C., Lin, C.J.: LIBSVM: a library for support vector machines. Software (2001), http:\/\/www.csie.ntu.edu.tw\/~cjlin\/libsvm"},{"key":"17_CR24","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1016\/0022-2836(82)90515-0","volume":"157","author":"J. Kyte","year":"1982","unstructured":"Kyte, J., Doolittle, R.F.: A Simple Method for Displaying the Hydropathic Character of a Protein. J. Mol. Biol.\u00a0157, 105\u2013132 (1982)","journal-title":"J. Mol. Biol."},{"key":"17_CR25","doi-asserted-by":"crossref","unstructured":"Shi, Y., Eberhart, R.C.: A modified particle swarm optimizer. In: Proceedings of the IEEE Congress on Evolutionary Computation (CEC 1998), Piscataway, NJ, pp. 69\u201373 (1998)","DOI":"10.1109\/ICEC.1998.699146"},{"key":"17_CR26","doi-asserted-by":"publisher","first-page":"783","DOI":"10.1016\/j.jmb.2004.05.028","volume":"340","author":"J.D. Bendtsen","year":"2004","unstructured":"Bendtsen, J.D., Nielsen, H., von Heijne, G., Brunak, S.: Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol.\u00a0340, 783\u2013795 (2004)","journal-title":"J. Mol. Biol."},{"key":"17_CR27","doi-asserted-by":"publisher","first-page":"741","DOI":"10.1093\/bioinformatics\/16.8.741","volume":"16","author":"K.M. Menne","year":"2000","unstructured":"Menne, K.M., Hermjakob, H., Apweiler, R.: A comparison of signal sequence prediction methods using a test set of signal peptides. Bioinformatics\u00a016, 741\u2013742 (2000)","journal-title":"Bioinformatics"},{"key":"17_CR28","doi-asserted-by":"crossref","first-page":"3886","DOI":"10.1128\/JB.181.13.3886-3889.1999","volume":"181","author":"K. Hamada","year":"1999","unstructured":"Hamada, K., Terashima, H., Arisawa, M., Yabuki, N., Kitada, K.: Amino acid residues in the omega-minus region participate in cellular localization of yeast glycosylphosphatidylinositol-attached proteins. J. Bacteriol.\u00a0181, 3886\u20133889 (1999)","journal-title":"J. Bacteriol."},{"key":"17_CR29","doi-asserted-by":"publisher","first-page":"1387","DOI":"10.1083\/jcb.108.4.1387","volume":"108","author":"I.W. Caras","year":"1989","unstructured":"Caras, I.W., Weddell, G.N., Williams, S.R.: Analysis of the Signal for Attachment of a Glycophospholipid Membrane Anchor. J. Cell Biol.\u00a0108, 1387\u20131396 (1989)","journal-title":"J. Cell Biol."},{"key":"17_CR30","doi-asserted-by":"publisher","first-page":"329","DOI":"10.1083\/jcb.115.2.329","volume":"115","author":"P. Moran","year":"1991","unstructured":"Moran, P., Caras, I.W.: A nonfunctional sequence converted to a signal for glycophosphatidylinositol membrane anchor attachment. J. Cell Biol.\u00a0115, 329\u2013336 (1991)","journal-title":"J. Cell Biol."}],"container-title":["Lecture Notes in Computer Science","Bioinformatics and Computational Biology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-00727-9_17","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,10,4]],"date-time":"2021-10-04T09:57:36Z","timestamp":1633341456000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-00727-9_17"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009]]},"ISBN":["9783642007262","9783642007279"],"references-count":30,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-00727-9_17","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2009]]}}}