{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T09:57:43Z","timestamp":1725530263861},"publisher-location":"Berlin, Heidelberg","reference-count":20,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642011832"},{"type":"electronic","value":"9783642011849"}],"license":[{"start":{"date-parts":[[2009,1,1]],"date-time":"2009-01-01T00:00:00Z","timestamp":1230768000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009]]},"DOI":"10.1007\/978-3-642-01184-9_13","type":"book-chapter","created":{"date-parts":[[2009,4,9]],"date-time":"2009-04-09T13:41:49Z","timestamp":1239284509000},"page":"140-151","source":"Crossref","is-referenced-by-count":2,"title":["Evolutionary Approaches for Strain Optimization Using Dynamic Models under a Metabolic Engineering Perspective"],"prefix":"10.1007","author":[{"given":"Pedro","family":"Evangelista","sequence":"first","affiliation":[]},{"given":"Isabel","family":"Rocha","sequence":"additional","affiliation":[]},{"given":"Eug\u00e9nio C.","family":"Ferreira","sequence":"additional","affiliation":[]},{"given":"Miguel","family":"Rocha","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"6","key":"13_CR1","doi-asserted-by":"publisher","first-page":"880","DOI":"10.1093\/bioinformatics\/btn051","volume":"24","author":"B.J. Bornstein","year":"2008","unstructured":"Bornstein, B.J., Keating, S.M., Jouraku, A., Hucka, M.: LibSBML: an API Library for SBML. Bioinformatics\u00a024(6), 880\u2013881 (2008)","journal-title":"Bioinformatics"},{"issue":"1","key":"13_CR2","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1002\/bit.10288","volume":"79","author":"C. Chassagnole","year":"2002","unstructured":"Chassagnole, C., Noisommit-Rizzi, N., Schmid, J.W., Mauch, K., Reuss, M.: Dynamic modeling of the central carbon metabolism of Escherichia coli. Biotechnology and Bioengineering\u00a079(1), 53\u201373 (2002)","journal-title":"Biotechnology and Bioengineering"},{"issue":"2","key":"13_CR3","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1063\/1.4822377","volume":"10","author":"S. Cohen","year":"1996","unstructured":"Cohen, S., Hindmarsh, C.: Cvode, a stiff\/nonstiff ode solver in c. Computers in Physics\u00a010(2), 138\u2013143 (1996)","journal-title":"Computers in Physics"},{"issue":"1","key":"13_CR4","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-1-1","volume":"1","author":"J.S. Edwards","year":"2000","unstructured":"Edwards, J.S., Palsson, B.O.: Metabolic flux balance analysis and the in silico analysis of escherichia coli k-12 gene deletions. BMC Bioinformatics\u00a01(1), 1 (2000)","journal-title":"BMC Bioinformatics"},{"issue":"17","key":"13_CR5","doi-asserted-by":"publisher","first-page":"5920","DOI":"10.1021\/jo970565m","volume":"62","author":"T. Gefflaut","year":"1997","unstructured":"Gefflaut, T., Lemaire, M., Valentin, M.-L., Bolte, J.: A novel efficient synthesis of dihydroxyacetone phosphate and bromoacetol phosphate for use in enzymatic aldol syntheses. The Journal of Organic Chemistry\u00a062(17), 5920\u20135922 (1997)","journal-title":"The Journal of Organic Chemistry"},{"issue":"8","key":"13_CR6","doi-asserted-by":"publisher","first-page":"1617","DOI":"10.1093\/bioinformatics\/bti225","volume":"21","author":"M.D. Haunschild","year":"2005","unstructured":"Haunschild, M.D., Freisleben, B., Takors, R., Wiechert, W.: Investigating the dynamic behavior of biochemical networks using model families. Bioinformatics\u00a021(8), 1617\u20131625 (2005)","journal-title":"Bioinformatics"},{"issue":"4","key":"13_CR7","doi-asserted-by":"publisher","first-page":"524","DOI":"10.1093\/bioinformatics\/btg015","volume":"19","author":"M. Hucka","year":"2003","unstructured":"Hucka, M., Finney, A., Sauro, H.M., Bolouri, H., Doyle, J.C., Kitano, H., Arkin, A.P., Bornstein, B.J., Bray, D., Cornish-Bowden, A., Cuellar, A.A., Dronov, S., Gilles, E.D., Ginkel, M., Gor, V., Goryanin, I.I., Hedley, W.J., Hodgman, T.C., Hofmeyr, J.-H., Hunter, P.J., Juty, N.S., Kasberger, J.L., Kremling, A., Kummer, U., Le Novere, N., Loew, L.M., Lucio, D., Mendes, P., Minch, E., Mjolsness, E.D., Nakayama, Y., Nelson, M.R., Nielsen, P.F., Sakurada, T., Schaff, J.C., Shapiro, B.E., Shimizu, T.S., Spence, H.D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J.: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics\u00a019(4), 524\u2013531 (2003)","journal-title":"Bioinformatics"},{"key":"13_CR8","unstructured":"Ishida, Y.: The immune system as a self-identification process: A survey and a proposal. In: Proceedings of the IMBS 1996 (1996)"},{"key":"13_CR9","unstructured":"JFreeChart, http:\/\/www.jfreechart.org\/jfreechart"},{"key":"13_CR10","doi-asserted-by":"publisher","DOI":"10.1016\/B978-155860797-2\/50014-7","volume-title":"Identifying metabolic pathways and gene regulation networks with evolutionary algorithms","author":"J. Kitagawa","year":"2003","unstructured":"Kitagawa, J., Iba, H.: Identifying metabolic pathways and gene regulation networks with evolutionary algorithms. Morgan Kaufmann, San Francisco (2003)"},{"key":"13_CR11","unstructured":"Koza, J.R.: Genetic programming (1992)"},{"issue":"10","key":"13_CR12","doi-asserted-by":"publisher","first-page":"869","DOI":"10.1093\/bioinformatics\/14.10.869","volume":"14","author":"P. Mendes","year":"1998","unstructured":"Mendes, P., Kell, D.: Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. Bioinformatics\u00a014(10), 869\u2013883 (1998)","journal-title":"Bioinformatics"},{"key":"13_CR13","first-page":"2133","volume-title":"GECCO 2005: Proceedings of the 2005 conference on Genetic and evolutionary computation","author":"J. Nummela","year":"2005","unstructured":"Nummela, J., Julstrom, B.A.: Evolving petri nets to represent metabolic pathways. In: GECCO 2005: Proceedings of the 2005 conference on Genetic and evolutionary computation, pp. 2133\u20132139. ACM, New York (2005)"},{"key":"13_CR14","doi-asserted-by":"crossref","unstructured":"Patil, K., Rocha, I., Forster, J., Nielsen, J.: Evolutionary programming as a platform for in silico metabolic engineering. BMC Bioinformatics\u00a06(308) (2005)","DOI":"10.1186\/1471-2105-6-308"},{"key":"13_CR15","doi-asserted-by":"crossref","unstructured":"Maia, P., Ferreira, E.C., Rocha, I., Rocha, M.: Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains. In: 8th IEEE International Conference on BioInformatics and BioEngineering Workshops (BIBE 2008), Athens, Greece (2008)","DOI":"10.1109\/BIBE.2008.4696733"},{"key":"13_CR16","doi-asserted-by":"crossref","unstructured":"Rocha, M., Maia, P., Mendes, R., Ferreira, E.C., Patil, K., Nielsen, J., Rocha, I.: Natural computation meta-heuristics for the in silico optimization of microbial strains. BMC Bioinformatics\u00a09(499) (2008)","DOI":"10.1186\/1471-2105-9-499"},{"key":"13_CR17","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1023\/A:1008202821328","volume":"11","author":"R. Storn","year":"1997","unstructured":"Storn, R., Price, K.: Differential Evolution - a Simple and Efficient Heuristic for Global Optimization over Continuous Spaces. Journal of Global Optimization\u00a011, 341\u2013359 (1997)","journal-title":"Journal of Global Optimization"},{"issue":"2-3","key":"13_CR18","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1111\/j.1574-6976.1995.tb00166.x","volume":"16","author":"J. Thiem","year":"1995","unstructured":"Thiem, J.: Applications of enzymes in synthetic carbohydrate chemistry. FEMS Microbiology Reviews\u00a016(2-3), 193\u2013211 (1995)","journal-title":"FEMS Microbiology Reviews"},{"issue":"8","key":"13_CR19","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1016\/S1364-8152(96)00030-8","volume":"12","author":"Q.J. Wang","year":"1997","unstructured":"Wang, Q.J.: Using genetic algorithms to optimise model parameters. Environmental Modelling and Software with Environment Data News\u00a012(8), 27\u201334 (1997)","journal-title":"Environmental Modelling and Software with Environment Data News"},{"key":"13_CR20","doi-asserted-by":"crossref","unstructured":"Yang, K., Ma, W., Liang, H., Ouyang, Q., Tang, C., Lai, L.: Dynamic simulations on the arachidonic acid metabolic network. PLoS Computational Biology, e55.eor+ (February 2007) (preprint)","DOI":"10.1371\/journal.pcbi.0030055.eor"}],"container-title":["Lecture Notes in Computer Science","Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-01184-9_13","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T11:42:10Z","timestamp":1558266130000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-01184-9_13"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009]]},"ISBN":["9783642011832","9783642011849"],"references-count":20,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-01184-9_13","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2009]]}}}