{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T10:09:26Z","timestamp":1725530966271},"publisher-location":"Berlin, Heidelberg","reference-count":18,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642015502"},{"type":"electronic","value":"9783642015519"}],"license":[{"start":{"date-parts":[[2009,1,1]],"date-time":"2009-01-01T00:00:00Z","timestamp":1230768000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009]]},"DOI":"10.1007\/978-3-642-01551-9_25","type":"book-chapter","created":{"date-parts":[[2009,4,28]],"date-time":"2009-04-28T10:29:20Z","timestamp":1240914560000},"page":"248-259","source":"Crossref","is-referenced-by-count":0,"title":["A Linear-Time Algorithm for Analyzing Array CGH Data Using Log Ratio Triangulation"],"prefix":"10.1007","author":[{"given":"Matthew","family":"Hayes","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jing","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"25_CR1","first-page":"2872","volume":"63","author":"J.A. Veltman","year":"2003","unstructured":"Veltman, J.A., Fridlyand, J., Pejavar, S., Olshen, A., Korkola, J., DeVries, S., Carroll, P., Kuo, W., Pinkel, D., Albertson, D., Cordon-Cardo, C., Jain, A., Waldman, F.: Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors. Cancer Res.\u00a063, 2872\u20132880 (2003)","journal-title":"Cancer Res."},{"key":"25_CR2","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1126\/science.6274023","volume":"215","author":"J. Whang-Peng","year":"1982","unstructured":"Whang-Peng, J., Kao-Shan, C., Lee, E., Bunn, P., Carney, D., Gadzar, A., Minna, J.: Specific chromosome defect associated with human small cell lung cancer; deletion 3p(14-23). Science\u00a0215, 181\u2013182 (1982)","journal-title":"Science"},{"issue":"17","key":"25_CR3","doi-asserted-by":"publisher","first-page":"1827","DOI":"10.1093\/hmg\/ddh195","volume":"13","author":"R. Leeuw de","year":"2004","unstructured":"de Leeuw, R., Davies, J., Rosenwald, A., Bebb, G., Gascoyne, D., Dyer, M., Staudt, L., Martinez-Climent, J., Lam, W.: Comprehensive whole genome array cgh profiling of mantle cell lymphoma model genomes. Hum. Mol. Genet.\u00a013(17), 1827\u20131837 (2004)","journal-title":"Hum. Mol. Genet."},{"key":"25_CR4","doi-asserted-by":"publisher","first-page":"96","DOI":"10.1186\/1471-2407-6-96","volume":"6","author":"J. Fridlyand","year":"2006","unstructured":"Fridlyand, J., Snijders, A., Ylstra, B., Li, H., Olshen, A., Segraves, R., Dairkee, Shanaz, Tokuasu, T., Ljung, B., Jain, A., McLenna, J., Ziegler, J., Chin, K., DeVries, S., Feiler, H., Gray, J., Waldman, F., Pinkel, D., Albertson, D.: Breast tumor copy number aberration phenotypes and genomic instability. BMC Cancer\u00a06, 96 (2006)","journal-title":"BMC Cancer"},{"key":"25_CR5","first-page":"1057","volume":"15","author":"Y. Wang","year":"2006","unstructured":"Wang, Y., Makedon, F., Pearlman, J.: Tumor classification based on DNA copy number aberrations determined using SNP arrays. Oncology Reports\u00a015, 1057\u20131061 (2006)","journal-title":"Oncology Reports"},{"key":"25_CR6","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1038\/ng1569","volume":"37","author":"D. Pinkel","year":"2005","unstructured":"Pinkel, D., Albertson, D.G.: Array comparative genomic hybridization and its applications in cancer. Nat. Genet.\u00a037, suppl. S11\u2013S17 (2005)","journal-title":"Nat. Genet."},{"key":"25_CR7","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1038\/ng754","volume":"3","author":"A. Snijders","year":"2001","unstructured":"Snijders, A., Nowak, N., Segraves, R., Blackwood, S., Brown, N., Conroy, J., Hamilton, G., Hindle, A., Huey, B., Kimura, K., Law, S., Myambo, K., Palmer, J., Ylstra, B., Yue, J., Gray, J., Jain, A., Pinkel, D., Albertson, D.: Assembly of microarrays for genome-wide measurement of DNA copy number. Nat. Genet.\u00a03, 263\u2013264 (2001)","journal-title":"Nat. Genet."},{"key":"25_CR8","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1093\/biostatistics\/kxh008","volume":"5","author":"A. Olshen","year":"2004","unstructured":"Olshen, A., Venkatraman, E.: Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics\u00a05, 557\u2013572 (2004)","journal-title":"Biostatistics"},{"issue":"22","key":"25_CR9","doi-asserted-by":"publisher","first-page":"4084","DOI":"10.1093\/bioinformatics\/bti677","volume":"21","author":"H. Willenbrock","year":"2005","unstructured":"Willenbrock, H., Fridlyand, J.: A comparison study: applying segmentation to array CGH data for downstream analyses. Bioinformatics\u00a021(22), 4084\u20134091 (2005)","journal-title":"Bioinformatics"},{"key":"25_CR10","doi-asserted-by":"publisher","first-page":"3763","DOI":"10.1093\/bioinformatics\/bti611","volume":"21","author":"W. Lai","year":"2005","unstructured":"Lai, W., Johnson, M., Kucherlapati, R., Park, P.: Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics\u00a021, 3763\u20133770 (2005)","journal-title":"Bioinformatics"},{"issue":"6","key":"25_CR11","doi-asserted-by":"publisher","first-page":"657","DOI":"10.1093\/bioinformatics\/btl646","volume":"23","author":"E. Venkatraman","year":"2007","unstructured":"Venkatraman, E., Olshen, A.: A Faster Circular Binary Segmentation Algorithm for the Analysis of Array CGH Data. Bioinformatics\u00a023(6), 657\u2013663 (2007)","journal-title":"Bioinformatics"},{"key":"25_CR12","unstructured":"Guha, S., Li, Y., Neuberg, D.: Bayesian Hidden Markov Modeling of Array CGH Data. Harvard University Biostatistics Working Paper Series. Working Paper 24 (2006)"},{"key":"25_CR13","doi-asserted-by":"crossref","unstructured":"Fridlyand, J., Snijders, A., Pinkel, D., Albertson, D., Jain, A.: Hidden Markov models approach to the analysis of array CGH data. J. Multivar. Anal.\u00a090, 132","DOI":"10.1016\/j.jmva.2004.02.008"},{"key":"25_CR14","volume-title":"Biological Sequence Analysis","author":"R. Durbin","year":"1999","unstructured":"Durbin, R., et al.: Biological Sequence Analysis. Cambridge University Press, Cambridge (1999)"},{"issue":"46","key":"25_CR15","doi-asserted-by":"publisher","first-page":"16292","DOI":"10.1073\/pnas.0407247101","volume":"101","author":"R. Daruwala","year":"2004","unstructured":"Daruwala, R., Rudra, A., Ostrer, H., Lucito, R., Wigler, M., Mishra, B.: A versatile statistical analysis algorithm to detect genome copy number variation. Proc. Natl. Acad. Sci.\u00a0101(46), 16292\u201316297 (2004)","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"7118","key":"25_CR16","doi-asserted-by":"publisher","first-page":"444","DOI":"10.1038\/nature05329","volume":"444","author":"R. Redon","year":"2006","unstructured":"Redon, R., Ishikawa, S., Fitch, K.R., Feuk, L., Perry, G.H., Andrews, T.D., Fiegler, H., Shapero, M.H., Carson, A.R., Chen, W., Cho, E.K., Dallaire, S., Freeman, J.L., Gonzalez, J.R., Gratacos, M., Huang, J., Kalaitzopoulos, D., Komura, D., MacDonald, J.R., Marshall, C.R., Mei, R., Montgomery, L., Nishimura, K., Okamura, K., Shen, F., Somerville, M.J., Tchinda, J., Valsesia, A., Woodwark, C., Yang, F., Zhang, J., Zerjal, T., Armengol, L., Conrad, D.F., Estivill, X., Tyler-Smith, C., Carter, N.P., Aburatani, H., Lee, C., Jones, K.W., Scherer, S.W., Hurles, M.E.: Global variation in copy number in the human genome. Nature\u00a0444(7118), 444\u2013454 (2006)","journal-title":"Nature"},{"issue":"suppl. 7","key":"25_CR17","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1038\/ng2028","volume":"39","author":"N.P. Carter","year":"2007","unstructured":"Carter, N.P.: Methods and strategies for analyzing copy number variation using dna microarrays. Nat. Genet.\u00a039(suppl. 7), S16\u2013S21 (2007)","journal-title":"Nat. Genet."},{"issue":"1","key":"25_CR18","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1038\/nmeth.1276","volume":"6","author":"D.Y. Chiang","year":"2009","unstructured":"Chiang, D.Y., Getz, G., Jaffe, D.B., O\u2019Kelly, M.J., Zhao, X., Carter, S.L., Russ, C., Nusbaum, C., Meyerson, M., Lander, E.S.: High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat. Methods\u00a06(1), 99\u2013103 (2009)","journal-title":"Nat. Methods"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-01551-9_25","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,3,7]],"date-time":"2019-03-07T23:36:09Z","timestamp":1552001769000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-01551-9_25"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009]]},"ISBN":["9783642015502","9783642015519"],"references-count":18,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-01551-9_25","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2009]]}}}