{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T10:09:05Z","timestamp":1725530945938},"publisher-location":"Berlin, Heidelberg","reference-count":17,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642015502"},{"type":"electronic","value":"9783642015519"}],"license":[{"start":{"date-parts":[[2009,1,1]],"date-time":"2009-01-01T00:00:00Z","timestamp":1230768000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009]]},"DOI":"10.1007\/978-3-642-01551-9_3","type":"book-chapter","created":{"date-parts":[[2009,4,28]],"date-time":"2009-04-28T06:29:20Z","timestamp":1240900160000},"page":"18-27","source":"Crossref","is-referenced-by-count":0,"title":["Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression"],"prefix":"10.1007","author":[{"given":"Brian E.","family":"Howard","sequence":"first","affiliation":[]},{"given":"Beate","family":"Sick","sequence":"additional","affiliation":[]},{"given":"Steffen","family":"Heber","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"3","key":"3_CR1","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1089\/omi.2006.10.381","volume":"10","author":"O. Larsson","year":"2006","unstructured":"Larsson, O., Wennmalm, K., Sandberg, R.: Comparative microarray analysis. OMICS: A Journal of Integrative Biology\u00a010(3), 381\u2013397 (2006)","journal-title":"OMICS: A Journal of Integrative Biology"},{"issue":"1","key":"3_CR2","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1089\/omi.2006.0001","volume":"11","author":"T. Wilkes","year":"2007","unstructured":"Wilkes, T., Laux, H., Foy, C.A.: Microarray data quality \u2013 review of current developments. OMICS: A Journal of Integrative Biology\u00a011(1), 1\u201313 (2007)","journal-title":"OMICS: A Journal of Integrative Biology"},{"issue":"2","key":"3_CR3","doi-asserted-by":"publisher","first-page":"198","DOI":"10.1093\/biostatistics\/kxj001","volume":"7","author":"K.J. Archer","year":"2006","unstructured":"Archer, K.J., Dumur, C.I., Joel, S.E., Ramakrishnan, V.: Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models. Biostatistics\u00a07(2), 198\u2013212 (2006)","journal-title":"Biostatistics"},{"key":"3_CR4","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1186\/1471-2105-6-166","volume":"6","author":"M. Reimer","year":"2005","unstructured":"Reimer, M., Weinstein, J.N.: Quality assessment of microarrays: visualization of spatial artifacts and quantitation of regional biases. BMC Bioinformatics\u00a06, 166 (2005)","journal-title":"BMC Bioinformatics"},{"issue":"6","key":"3_CR5","doi-asserted-by":"publisher","first-page":"1068","DOI":"10.1007\/s10439-007-9313-y","volume":"35","author":"T.H. Stokes","year":"2007","unstructured":"Stokes, T.H., Moffitt, R.A., Phan, J.H., Wang, M.D.: chip artifact CORRECTion (caCORRECT): a bioinformatics system for quality assurance of genomics and proteomics array data. Annals of Biomedical Engineering\u00a035(6), 1068\u20131080 (2007)","journal-title":"Annals of Biomedical Engineering"},{"key":"3_CR6","doi-asserted-by":"publisher","DOI":"10.1007\/0-387-29362-0","volume-title":"Bioinformatics and computational biology solutions using R and Bioconductor","author":"R. Gentleman","year":"2005","unstructured":"Gentleman, R., Carey, V., Huber, W., Irizarry, R., Dudoit, S.: Bioinformatics and computational biology solutions using R and Bioconductor. Springer, New York (2005)"},{"issue":"3","key":"3_CR7","doi-asserted-by":"publisher","first-page":"358","DOI":"10.1089\/omi.2006.10.358","volume":"10","author":"S. Heber","year":"2006","unstructured":"Heber, S., Sick, B.: Quality assessment of Affymetrix GeneChip data. OMICS: A Journal of Integrative Biology\u00a010(3), 358\u2013368 (2006)","journal-title":"OMICS: A Journal of Integrative Biology"},{"key":"3_CR8","doi-asserted-by":"crossref","unstructured":"Howard, B.E., Sick, B., Heber, S.: Unsupervised assessment of microarray data qQuality using a Gaussian mixture model (2009) (manuscript) (submitted)","DOI":"10.1186\/1471-2105-10-191"},{"key":"3_CR9","doi-asserted-by":"publisher","first-page":"3017","DOI":"10.1093\/bioinformatics\/bti448","volume":"21","author":"Y. Pawitan","year":"2005","unstructured":"Pawitan, Y., et al.: False discovery rate, sensitivity and sample size for microarray studies. Bioinformatics\u00a021, 3017\u20133024 (2005)","journal-title":"Bioinformatics"},{"key":"3_CR10","doi-asserted-by":"publisher","first-page":"261","DOI":"10.1186\/1471-2105-7-261","volume":"7","author":"M.E. Ritchie","year":"2006","unstructured":"Ritchie, M.E., Diyagama, D., Neilson, J., van Laar, R., Dobrovic, A., Holloway, A., Smyth, G.: Empirical array quality weights in the analysis of microarray data. BMC Bioinformatics\u00a07, 261 (2006)","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"3_CR11","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1093\/nar\/30.1.207","volume":"30","author":"R. Edgar","year":"2002","unstructured":"Edgar, R., Domrachev, M., Lash, A.E.: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Research\u00a030(1), 207\u2013210 (2002)","journal-title":"Nucleic Acids Research"},{"issue":"4","key":"3_CR12","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1093\/nar\/gng015","volume":"31","author":"R.A. Irizarry","year":"2003","unstructured":"Irizarry, R.A., Bolstad, B.M., Collin, F., Cope, L.M., Hobbs, B., Speed, T.P.: Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Research\u00a031(4), e15 (2003)","journal-title":"Nucleic Acids Research"},{"key":"3_CR13","doi-asserted-by":"crossref","unstructured":"Smyth, G.K.: Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology\u00a03(1) (2004)","DOI":"10.2202\/1544-6115.1027"},{"key":"3_CR14","doi-asserted-by":"publisher","first-page":"861","DOI":"10.1016\/j.patrec.2005.10.010","volume":"27","author":"T. Fawcett","year":"2006","unstructured":"Fawcett, T.: An introduction to ROC analysis. Pattern Recognition Letters\u00a027, 861\u2013874 (2006)","journal-title":"Pattern Recognition Letters"},{"issue":"5","key":"3_CR15","doi-asserted-by":"publisher","first-page":"1643","DOI":"10.1152\/japplphysiol.00522.2005","volume":"99","author":"J. Li","year":"2005","unstructured":"Li, J., Grigoryev, D.N., Ye, S.Q., Thorne, L., et al.: Chronic intermittent hypoxia upregulates genes of lipid biosynthesis in obese mice. Journal of Applied Physiology\u00a099(5), 1643\u20131648 (2005)","journal-title":"Journal of Applied Physiology"},{"issue":"9","key":"3_CR16","doi-asserted-by":"publisher","first-page":"5116","DOI":"10.1073\/pnas.091062498","volume":"98","author":"V.G. Tusher","year":"2001","unstructured":"Tusher, V.G., Tibshirani, R., Chu, G.: Significance analysis of microarrays applied to the ionizing radiation response. PNAS\u00a098(9), 5116\u20135121 (2001)","journal-title":"PNAS"},{"key":"3_CR17","doi-asserted-by":"publisher","first-page":"509","DOI":"10.1093\/bioinformatics\/17.6.509","volume":"17","author":"P. Baldi","year":"2001","unstructured":"Baldi, P., Long, A.D.: A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics\u00a017, 509\u2013519 (2001)","journal-title":"Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-01551-9_3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T14:44:27Z","timestamp":1558277067000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-01551-9_3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009]]},"ISBN":["9783642015502","9783642015519"],"references-count":17,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-01551-9_3","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2009]]}}}