{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T11:31:12Z","timestamp":1725535872935},"publisher-location":"Berlin, Heidelberg","reference-count":12,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642032226"},{"type":"electronic","value":"9783642032233"}],"license":[{"start":{"date-parts":[[2009,1,1]],"date-time":"2009-01-01T00:00:00Z","timestamp":1230768000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009]]},"DOI":"10.1007\/978-3-642-03223-3_3","type":"book-chapter","created":{"date-parts":[[2009,7,29]],"date-time":"2009-07-29T09:53:14Z","timestamp":1248861194000},"page":"24-35","source":"Crossref","is-referenced-by-count":4,"title":["Comparison of Spectra in Unsequenced Species"],"prefix":"10.1007","author":[{"given":"Freddy","family":"Cliquet","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Guillaume","family":"Fertin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Irena","family":"Rusu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dominique","family":"Tessier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"6","key":"3_CR1","doi-asserted-by":"publisher","first-page":"777","DOI":"10.1089\/10665270050514927","volume":"7","author":"P.A. Pevzner","year":"2000","unstructured":"Pevzner, P.A., Danc\u00edk, V., Tang, C.L.: Mutation-tolerant protein identification by mass spectrometry. J. Comput. Biol.\u00a07(6), 777\u2013787 (2000)","journal-title":"J. Comput. Biol."},{"issue":"3","key":"3_CR2","doi-asserted-by":"publisher","first-page":"238","DOI":"10.1074\/mcp.M300073-MCP200","volume":"3","author":"B. Habermann","year":"2004","unstructured":"Habermann, B., Oegema, J., Sunyaev, S., Shevchenko, A.: The power and the limitations of cross-species protein identification by mass spectrometry-driven sequence similarity searches. Mol. Cell. Proteomics\u00a03(3), 238\u2013249 (2004)","journal-title":"Mol. Cell. Proteomics"},{"issue":"23","key":"3_CR3","doi-asserted-by":"publisher","first-page":"4245","DOI":"10.1002\/pmic.200700474","volume":"7","author":"J. Grossmann","year":"2007","unstructured":"Grossmann, J., Fischer, B., Baerenfaller, K., Owiti, J., Buhmann, J.M., Gruissem, W., Baginsky, S.: A workflow to increase the detection rate of proteins from unsequenced organisms in high-throughput proteomics experiments. Proteomics\u00a07(23), 4245\u20134254 (2007)","journal-title":"Proteomics"},{"issue":"11","key":"3_CR4","doi-asserted-by":"publisher","first-page":"3018","DOI":"10.1021\/pr060222h","volume":"5","author":"S. Pevtsov","year":"2006","unstructured":"Pevtsov, S., Fedulova, I., Mirzaei, H., Buck, C., Zhang, X.: Performance evaluation of existing de novo sequencing algorithms. J. Proteome. Res.\u00a05(11), 3018\u20133028 (2006)","journal-title":"J. Proteome. Res."},{"issue":"17","key":"3_CR5","doi-asserted-by":"publisher","first-page":"3051","DOI":"10.1002\/pmic.200700224","volume":"7","author":"E. Pitzer","year":"2007","unstructured":"Pitzer, E., Masselot, A., Colinge, J.: Assessing peptide de novo sequencing algorithms performance on large and diverse data sets. Proteomics\u00a07(17), 3051\u20133054 (2007)","journal-title":"Proteomics"},{"issue":"11","key":"3_CR6","doi-asserted-by":"publisher","first-page":"976","DOI":"10.1016\/1044-0305(94)80016-2","volume":"5","author":"J. Eng","year":"1994","unstructured":"Eng, J., McCormack, A., Yates, J.: An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom\u00a05(11), 976\u2013989 (1994)","journal-title":"J. Am. Soc. Mass Spectrom"},{"issue":"18","key":"3_CR7","doi-asserted-by":"publisher","first-page":"3551","DOI":"10.1002\/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2","volume":"20","author":"D.N. Perkins","year":"1999","unstructured":"Perkins, D.N., Pappin, D.J., Creasy, D.M., Cottrell, J.S.: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis\u00a020(18), 3551\u20133567 (1999)","journal-title":"Electrophoresis"},{"issue":"8","key":"3_CR8","doi-asserted-by":"publisher","first-page":"1426","DOI":"10.1021\/ac00104a020","volume":"67","author":"J.R. Yates","year":"1995","unstructured":"Yates, J.R., Eng, J.K., McCormack, A.L., Schieltz, D.: Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal. Chem.\u00a067(8), 1426\u20131436 (1995)","journal-title":"Anal. Chem."},{"issue":"2","key":"3_CR9","doi-asserted-by":"publisher","first-page":"290","DOI":"10.1101\/gr.154101","volume":"11","author":"P.A. Pevzner","year":"2001","unstructured":"Pevzner, P.A., Mulyukov, Z., Dancik, V., Tang, C.L.: Efficiency of database search for identification of mutated and modified proteins via mass spectrometry. Genome Res.\u00a011(2), 290\u2013299 (2001)","journal-title":"Genome Res."},{"issue":"12","key":"3_CR10","doi-asserted-by":"publisher","first-page":"1562","DOI":"10.1038\/nbt1168","volume":"23","author":"D. Tsur","year":"2005","unstructured":"Tsur, D., Tanner, S., Zandi, E., Bafna, V., Pevzner, P.A.: Identification of post-translational modifications by blind search of mass spectra. Nat. Biotechnol.\u00a023(12), 1562\u20131567 (2005)","journal-title":"Nat. Biotechnol."},{"issue":"3-4","key":"3_CR11","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1089\/106652799318300","volume":"6","author":"V. Dancik","year":"1999","unstructured":"Dancik, V., Addona, T., Clauser, K., Vath, J., Pevzner, P.: De novo peptide sequencing via tandem mass spectrometry. Journal of Computational Biology\u00a06(3-4), 327\u2013342 (1999)","journal-title":"Journal of Computational Biology"},{"issue":"1","key":"3_CR12","doi-asserted-by":"publisher","first-page":"114","DOI":"10.1021\/pr060271u","volume":"6","author":"A.M. Frank","year":"2007","unstructured":"Frank, A.M., Savitski, M.M., Nielsen, M.L., Zubarev, R.A., Pevzner, P.A.: De novo peptide sequencing and identification with precision mass spectrometry. J. Proteome Res.\u00a06(1), 114\u2013123 (2007)","journal-title":"J. Proteome Res."}],"container-title":["Lecture Notes in Computer Science","Advances in Bioinformatics and Computational Biology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-03223-3_3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,3,9]],"date-time":"2019-03-09T07:03:19Z","timestamp":1552114999000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-03223-3_3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009]]},"ISBN":["9783642032226","9783642032233"],"references-count":12,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-03223-3_3","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2009]]}}}