{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,7,26]],"date-time":"2025-07-26T09:11:28Z","timestamp":1753521088245},"publisher-location":"Berlin, Heidelberg","reference-count":18,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642038440"},{"type":"electronic","value":"9783642038457"}],"license":[{"start":{"date-parts":[[2009,1,1]],"date-time":"2009-01-01T00:00:00Z","timestamp":1230768000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009]]},"DOI":"10.1007\/978-3-642-03845-7_3","type":"book-chapter","created":{"date-parts":[[2009,8,26]],"date-time":"2009-08-26T02:41:17Z","timestamp":1251254477000},"page":"26-51","source":"Crossref","is-referenced-by-count":7,"title":["BlenX4Bio \u2013 BlenX for Biologists"],"prefix":"10.1007","author":[{"given":"Corrado","family":"Priami","sequence":"first","affiliation":[]},{"given":"Paolo","family":"Ballarini","sequence":"additional","affiliation":[]},{"given":"Paola","family":"Quaglia","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"unstructured":"BioSpice home page, http:\/\/biospice.sourceforge.net\/","key":"3_CR1"},{"issue":"5","key":"3_CR2","doi-asserted-by":"publisher","first-page":"437","DOI":"10.1093\/bib\/bbn023","volume":"9","author":"L. Dematt\u00e9","year":"2008","unstructured":"Dematt\u00e9, L., Priami, C., Romanel, A.: The Beta Workbench: a computational tool to study the dynamics of biological systems. Brief. Bioinform.\u00a09(5), 437\u2013449 (2008)","journal-title":"Brief. Bioinform."},{"key":"3_CR3","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1007\/978-3-540-68894-5_9","volume-title":"Formal Methods for Computational Systems Biology","author":"L. Dematt\u00e9","year":"2008","unstructured":"Dematt\u00e9, L., Priami, C., Romanel, A.: The BlenX Language: A Tutorial. In: Bernardo, M., Degano, P., Zavattaro, G. (eds.) SFM 2008. LNCS, vol.\u00a05016, pp. 313\u2013365. Springer, Heidelberg (2008)"},{"doi-asserted-by":"crossref","unstructured":"Guerriero, M.L., Dudka, A., Underhill-Day, N., Heath, J.K., Priami, C.: Narrative-based computational modelling of the gp130\/jak\/stat signalling pathway. BMC Systems Biology\u00a03(40) (2009)","key":"3_CR4","DOI":"10.1186\/1752-0509-3-40"},{"key":"3_CR5","volume-title":"Algorithmic Bioprocesses","author":"M.L. Guerriero","year":"2009","unstructured":"Guerriero, M.L., Prandi, D., Priami, C., Quaglia, P.: Process calculi abstractions for biology. In: Condon, A., Harel, D., Kok, J.N., Salomaa, A., Winfree, E. (eds.) Algorithmic Bioprocesses. Springer, Heidelberg (2009)"},{"key":"3_CR6","series-title":"LNBI","doi-asserted-by":"publisher","first-page":"136","DOI":"10.1007\/978-3-540-75140-3_10","volume-title":"Computational Methods in Systems Biology","author":"J.K. Heath","year":"2007","unstructured":"Heath, J.K., Guerriero, M.L., Priami, C.: An automated translation from a narrative language for biological modelling into process algebra. In: Calder, M., Gilmore, S. (eds.) CMSB 2007. LNCS (LNBI), vol.\u00a04695, pp. 136\u2013151. Springer, Heidelberg (2007)"},{"unstructured":"Jarnac home page, http:\/\/www.sys-bio.org\/software\/jarnac.htm","key":"3_CR7"},{"key":"3_CR8","volume-title":"Molecular Cell Biology","author":"H. Lodish","year":"2004","unstructured":"Lodish, H., Berk, A., Matsudaira, P., Kaiser, C.A., Krieger, M., Scott, M.P., Zipursky, S.L., Darnell, J.: Molecular Cell Biology, 5th edn. Freeman, New York (2004)","edition":"5"},{"key":"3_CR9","doi-asserted-by":"publisher","first-page":"361","DOI":"10.1016\/S0968-0004(97)01103-1","volume":"22","author":"P. Mendes","year":"1997","unstructured":"Mendes, P.: Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3. Trends Biochem. Sci.\u00a022, 361\u2013363 (1997)","journal-title":"Trends Biochem. Sci."},{"issue":"1","key":"3_CR10","doi-asserted-by":"publisher","first-page":"306","DOI":"10.1021\/bi011506c","volume":"41","author":"G. Moehren","year":"2002","unstructured":"Moehren, G., Markevich, N., Demin, O., Kiyatkin, A., Goryanin, I., Hoek, J., Kholodenko, B.N.: Temperature dependence of epidermal growth factor receptor signaling network can be accounted for using a kinetic model. Biochemistry\u00a041(1), 306\u2013320 (2002)","journal-title":"Biochemistry"},{"key":"3_CR11","doi-asserted-by":"publisher","first-page":"575","DOI":"10.1093\/bioinformatics\/17.6.575","volume":"17","author":"N. Novere Le","year":"2001","unstructured":"Le Novere, N., Shimizu, T.S.: StochSim: modelling of stochastic biomolecular processes. Bioinformatics\u00a017, 575\u2013576 (2001)","journal-title":"Bioinformatics"},{"issue":"5","key":"3_CR12","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1145\/1506409.1506427","volume":"52","author":"C. Priami","year":"2009","unstructured":"Priami, C.: Algorithmic systems biology. CACM\u00a052(5), 80\u201388 (2009)","journal-title":"CACM"},{"doi-asserted-by":"crossref","unstructured":"Priami, C., Quaglia, P.: Modeling the dynamics of bio-systems. Briefings in Bionformatics\u00a05(3) (2004)","key":"3_CR13","DOI":"10.1093\/bib\/5.3.259"},{"key":"3_CR14","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1007\/978-3-540-25974-9_3","volume-title":"Computational Methods in Systems Biology","author":"C. Priami","year":"2005","unstructured":"Priami, C., Quaglia, P.: Beta Binders for Biological Interactions. In: Danos, V., Sch\u00e4chter, V. (eds.) CMSB 2004. LNCS (LNBI), vol.\u00a03082, pp. 20\u201333. Springer, Heidelberg (2005)"},{"key":"3_CR15","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1038\/419343a","volume":"419","author":"A. Regev","year":"2002","unstructured":"Regev, A., Shapiro, E.: Cells as computations. Nature\u00a0419, 343 (2002)","journal-title":"Nature"},{"unstructured":"SBML home page, http:\/\/sbml.org\/","key":"3_CR16"},{"issue":"1","key":"3_CR17","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1093\/bioinformatics\/15.1.72","volume":"15","author":"M. Tomita","year":"1999","unstructured":"Tomita, M., Hashimoto, K., Takahashi, K., Shimizu, T.S., Matsuzaki, Y., Miyoshi, F., Saito, K., Tanida, S., Yugi, K., Venter, J.C., Hutchison, C.A.3.: E-CELL: software environment for whole-cell simulation. Bioinformatics\u00a015(1), 72\u201384 (1999)","journal-title":"Bioinformatics"},{"unstructured":"Virtual Cell home page, http:\/\/www.ibiblio.org\/virtualcell\/","key":"3_CR18"}],"container-title":["Lecture Notes in Computer Science","Computational Methods in Systems Biology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-03845-7_3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,22]],"date-time":"2019-05-22T01:11:57Z","timestamp":1558487517000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-03845-7_3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009]]},"ISBN":["9783642038440","9783642038457"],"references-count":18,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-03845-7_3","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2009]]}}}