{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,26]],"date-time":"2025-03-26T21:26:47Z","timestamp":1743024407927,"version":"3.40.3"},"publisher-location":"Berlin, Heidelberg","reference-count":38,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642123092"},{"type":"electronic","value":"9783642123108"}],"license":[{"start":{"date-parts":[[2010,1,1]],"date-time":"2010-01-01T00:00:00Z","timestamp":1262304000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010]]},"DOI":"10.1007\/978-3-642-12310-8_15","type":"book-chapter","created":{"date-parts":[[2010,3,15]],"date-time":"2010-03-15T06:50:31Z","timestamp":1268635831000},"page":"291-306","source":"Crossref","is-referenced-by-count":3,"title":["Chapter 15: Search Computing and the Life Sciences"],"prefix":"10.1007","author":[{"given":"Marco","family":"Masseroli","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Norman W.","family":"Paton","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Irena","family":"Spasi\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"2","key":"15_CR1","doi-asserted-by":"publisher","first-page":"174","DOI":"10.1093\/bib\/bbn004","volume":"9","author":"D. Stead","year":"2008","unstructured":"Stead, D., Paton, N.W., Missier, P., Embury, S.M., Hedeler, C., Jin, B., Brown, A.J.P., Preece, A.D.: Information quality in proteomics. Brief. Bioinform.\u00a09(2), 174\u2013188 (2008)","journal-title":"Brief. Bioinform."},{"issue":"Database issue","key":"15_CR2","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1093\/nar\/gki056","volume":"33","author":"H. Parkinson","year":"2005","unstructured":"Parkinson, H., Sarkans, U., Shojatalab, M., Abeygunawardena, N., Contrino, S., Coulson, R., Farne, A., Lara, G.G., Holloway, E., Kapushesky, M., Lilja, P., Mukherjee, G., Oezcimen, A., Rayner, T., Rocca-Serra, P., Sharma, A., Sansone, S., Brazma, A.: ArrayExpress\u2013a public repository for microarray gene expression data at the EBI. Nucleic Acids Res.\u00a033(Database issue), D553-D555 (2005)","journal-title":"Nucleic Acids Res."},{"issue":"Database issue","key":"15_CR3","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/nar\/gkn942","volume":"37","author":"M.Y. Galperin","year":"2009","unstructured":"Galperin, M.Y., Cochrane, G.R.: Nucleic Acids Research annual database issue and the NAR online molecular biology database collection in 2009. Nucleic Acids Res.\u00a037(Database issue), D1\u2013D4 (2009)","journal-title":"Nucleic Acids Res."},{"issue":"suppl. 2","key":"15_CR4","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1186\/gb-2008-9-s2-s8","volume":"9","author":"M. Krallinger","year":"2008","unstructured":"Krallinger, M., Valencia, A., Hirschman, L.: Linking genes to literature: text mining, information extraction, and retrieval applications for biology. Genome Biol.\u00a09(suppl. 2), S8 (2008)","journal-title":"Genome Biol."},{"issue":"3","key":"15_CR5","doi-asserted-by":"publisher","first-page":"239","DOI":"10.1093\/bib\/6.3.239","volume":"6","author":"I. Spasic","year":"2005","unstructured":"Spasic, I., Ananiadou, S., McNaught, J., Kumar, A.: Text mining and ontologies in biomedicine: making sense of raw text. Brief. Bioinform.\u00a06(3), 239\u2013251 (2005)","journal-title":"Brief. Bioinform."},{"issue":"5","key":"15_CR6","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1109\/MIC.2008.105","volume":"12","author":"D. Braga","year":"2008","unstructured":"Braga, D., Ceri, S., Daniel, F., Martinenghi, D.: Mashing up search services. IEEE Internet Comput.\u00a012(5), 16\u201323 (2008)","journal-title":"IEEE Internet Comput."},{"issue":"3","key":"15_CR7","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1145\/1031570.1031583","volume":"33","author":"T. Hernandez","year":"2004","unstructured":"Hernandez, T., Kambhampati, S.: Integration of biological sources: current systems and challenges ahead. SIGMOD Record\u00a033(3), 51\u201360 (2004)","journal-title":"SIGMOD Record"},{"key":"15_CR8","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1007\/978-3-642-02879-3_8","volume-title":"Data Integration in the Life Sciences","author":"M. Masseroli","year":"2009","unstructured":"Masseroli, M., Ceri, S., Campi, A.: Integration and mining of genomic annotations: experiences and perspectives in GFINDer data warehousing. In: Paton, N.W., Missier, P., Hedeler, C. (eds.) DILS 2009. LNCS (LNBI), vol.\u00a05647, pp. 88\u201395. Springer, Heidelberg (2009)"},{"key":"15_CR9","doi-asserted-by":"publisher","first-page":"729","DOI":"10.1093\/nar\/gkl320","volume":"34","author":"D. Hull","year":"2006","unstructured":"Hull, D., Wolstencroft, K., Stevens, R., Goble, C.A., Pocock, M.R., Li, P., Oinn, T.: Taverna: a tool for building and running workflows of services. Nucleic Acids Res.\u00a034, 729\u2013732 (2006)","journal-title":"Nucleic Acids Res."},{"issue":"2","key":"15_CR10","doi-asserted-by":"publisher","first-page":"534","DOI":"10.1147\/sj.402.0532","volume":"40","author":"C.A. Goble","year":"2001","unstructured":"Goble, C.A., Stevens, R., Ng, G., Bechhofer, S., Paton, N.W., Baker, P.G., Peim, M., Brass, A.: Transparent access to multiple bioinformatics information sources. IBM Systems Journal\u00a040(2), 534\u2013551 (2001)","journal-title":"IBM Systems Journal"},{"key":"15_CR11","first-page":"613","volume-title":"Proceedings of the 10th International World Wide Web Conference, WWW 2001","author":"C. Dwork","year":"2001","unstructured":"Dwork, C., Kumar, R., Naor, M., Sivakumar, D.: Rank aggregation methods for the web. In: Proceedings of the 10th International World Wide Web Conference, WWW 2001, pp. 613\u2013622. ACM Press, New York (2001)"},{"issue":"1","key":"15_CR12","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1093\/nar\/30.1.207","volume":"30","author":"R. Edgar","year":"2002","unstructured":"Edgar, R., Domravech, M., Lash, A.E.: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res.\u00a030(1), 207\u2013210 (2002)","journal-title":"Nucleic Acids Res."},{"issue":"Database Issue","key":"15_CR13","doi-asserted-by":"publisher","first-page":"659","DOI":"10.1093\/nar\/gkj138","volume":"34","author":"P. Jones","year":"2006","unstructured":"Jones, P., C\u00f4t\u00e9, R.G., Martens, L., Quinn, A.F., Taylor, C.F., Derache, W., Hermjakob, H., Apweiler, R.: PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res.\u00a034(Database Issue), D659\u2013D663 (2006)","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"15_CR14","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1089\/153623103322006652","volume":"7","author":"F. Olken","year":"2003","unstructured":"Olken, F.: Graph data management for molecular biology. OMICS: A Journal of Integr. Biol.\u00a07(1), 75\u201378 (2003)","journal-title":"OMICS: A Journal of Integr. Biol."},{"issue":"2","key":"15_CR15","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1186\/jbiol54","volume":"6","author":"J.I. Castrillo","year":"2007","unstructured":"Castrillo, J.I., Zeef, L.A., Hoyle, D.C., Zhang, N., Hayes, A., Gardner, D.C., Cornell, M.J., Petty, J., Hakes, L., Wardleworth, L., Rash, B., Brown, M., Dunn, W.B., Broadhurst, D., O\u2019Donoghue, K., Hester, S.S., Dunkley, T.P., Hart, S.R., Swainston, N., Li, P., Gaskell, S.J., Paton, N.W., Lilley, K.S., Kell, D.B., Oliver, S.G.: Growth control of the eukaryote cell: a systems biology study in yeast. J. Biol.\u00a06(2), 4 (2007)","journal-title":"J. Biol."},{"issue":"3","key":"15_CR16","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"S.F. Altschul","year":"1990","unstructured":"Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.: Basic Local Alignment Search Tool. J. Mol. Biol.\u00a0215(3), 403\u2013410 (1990)","journal-title":"J. Mol. Biol."},{"issue":"5","key":"15_CR17","doi-asserted-by":"publisher","first-page":"513","DOI":"10.1016\/0306-4573(88)90021-0","volume":"24","author":"G. Salton","year":"1988","unstructured":"Salton, G., Buckley, C.: Term-weighting approaches in automatic text retrieval. Inf. Process Manag.\u00a024(5), 513\u2013523 (1988)","journal-title":"Inf. Process Manag."},{"issue":"suppl. 2","key":"15_CR18","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1186\/gb-2008-9-s2-s6","volume":"9","author":"F. Leitner","year":"2008","unstructured":"Leitner, F., Krallinger, M., Rodriguez-Penagos, C., Hakenberg, J., Plake, C., Kuo, C.J., Hsu, C.N., Tsai, R.T., Hung, H.C., Lau, W.W., Johnson, C.A., Saetre, R., Yoshida, K., Chen, Y.H., Kim, S., Shin, S.Y., Zhang, B.T., Baumgartner Jr., W.A., Hunter, L., Haddow, B., Matthews, M., Wang, X., Ruch, P., Ehrler, F., Ozg\u00fcr, A., Erkan, G., Radev, D.R., Krauthammer, M., Luong, T., Hoffmann, R., Sander, C., Valencia, A.: Introducing meta-services for biomedical information extraction. Genome Biol.\u00a09(suppl. 2), S6 (2008)","journal-title":"Genome Biol."},{"key":"15_CR19","doi-asserted-by":"crossref","unstructured":"Goble, C.A., Belhajjame, K., Tanoh, F., Bhagat, J., Wolstencroft, K., Stevens, R., Pettifer, S., Nzuobontane, E., McWilliam, H., Laurent, T., Lopez, R.: BioCatalogue: a curated Web Service registry for the Life Science community. In: ISMB\/ECCB 2009. Technology Track: TT40 (2009)","DOI":"10.1038\/npre.2009.3132.1"},{"issue":"1","key":"15_CR20","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1016\/j.jbi.2006.02.007","volume":"40","author":"B. Louie","year":"2007","unstructured":"Louie, B., Mork, P., Martin-Sanchez, F., Halevy, A., Tarczy-Hornoch, P.: Data integration and genomic medicine. J. Biomed. Inform.\u00a040(1), 5\u201316 (2007)","journal-title":"J. Biomed. Inform."},{"issue":"13","key":"15_CR21","doi-asserted-by":"publisher","first-page":"1607","DOI":"10.1093\/bioinformatics\/btm158","volume":"23","author":"V. Pihur","year":"2007","unstructured":"Pihur, V., Datta, S., Datta, S.: Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach. Bioinformatics\u00a023(13), 1607\u20131615 (2007)","journal-title":"Bioinformatics"},{"key":"15_CR22","doi-asserted-by":"crossref","unstructured":"DeConde, R., Hawley, S., Falcon, S., Clegg, N., Knudsen, B., Etzioni, R.: Combining results of microarray experiments: a rank aggregation approach. Stat. Appl. Genet. Mol. Biol. 5, Article 15 (2006)","DOI":"10.2202\/1544-6115.1204"},{"key":"15_CR23","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1186\/1471-2105-10-62","volume":"10","author":"V. Pihur","year":"2009","unstructured":"Pihur, V., Datta, S., Datta, S.: RankAggreg, an R package for weighted rank aggregation. BMC Bioinformatics\u00a010, 62 (2009)","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"15_CR24","doi-asserted-by":"publisher","first-page":"134","DOI":"10.1137\/S0895480102412856","volume":"17","author":"R. Fagin","year":"2003","unstructured":"Fagin, R., Kumar, R., Sivakumar, D.: Comparing top k lists. SIAM J. Discrete Math.\u00a017(1), 134\u2013160 (2003)","journal-title":"SIAM J. Discrete Math."},{"key":"15_CR25","first-page":"421","volume-title":"Proceedings 17th International Conference on Data Engineering, ICDE 2001","author":"S. B\u00f6rzs\u00f6nyi","year":"2001","unstructured":"B\u00f6rzs\u00f6nyi, S., Kossmann, D., Stocker, K.: The Skyline operator. In: Proceedings 17th International Conference on Data Engineering, ICDE 2001, pp. 421\u2013430. IEEE Press, New York (2001)"},{"key":"15_CR26","first-page":"2727","volume":"8","author":"C. Hue","year":"2007","unstructured":"Hue, C., Boull\u00e9, M.: A new probabilistic approach in rank regression with optimal bayesian partitioning. J. Mach. Learn. Res.\u00a08, 2727\u20132754 (2007)","journal-title":"J. Mach. Learn. Res."},{"key":"15_CR27","unstructured":"Cheung, C.W.: Probabilistic rank aggregation for multiple SVM ranking. MPhil Thesis. Department of Computer Science and Engineering, The Hong Kong University of Science and Technology. Hong Kong (2009)"},{"key":"15_CR28","series-title":"Mathematics in Science and Engineering","volume-title":"Theory of multiobjective optimization","author":"Y. Sawaragi","year":"1985","unstructured":"Sawaragi, Y., Nakayama, H., Tanino, T.: Theory of multiobjective optimization. Mathematics in Science and Engineering, vol.\u00a0176. Academic Press Inc., Orlando (1985)"},{"key":"15_CR29","volume-title":"Multiple criteria optimization: theory, computations, and application","author":"R.E. Steuer","year":"1986","unstructured":"Steuer, R.E.: Multiple criteria optimization: theory, computations, and application. John Wiley & Sons, Inc., New York (1986)"},{"key":"15_CR30","volume-title":"Multi-objective optimization using evolutionary algorithms","author":"K. Deb","year":"2002","unstructured":"Deb, K.: Multi-objective optimization using evolutionary algorithms. John Wiley & Sons, Inc., New York (2002)"},{"key":"15_CR31","doi-asserted-by":"crossref","unstructured":"Deb, K., Agrawal, S., Pratap, A., Meyarivan, T.: A fast elitist non-dominated sorting genetic algorithm for multi-objective optimization: NSGA-II. KanGAL Report no. 200001 (2000)","DOI":"10.1007\/3-540-45356-3_83"},{"key":"15_CR32","unstructured":"Zitzler, E., Thiele, L.: An evolutionary algorithm for multiobjective optimization: the strength Pareto approach. TIK-Report no. 43 (1998)"},{"issue":"2","key":"15_CR33","doi-asserted-by":"publisher","first-page":"279","DOI":"10.1109\/TCBB.2007.070203","volume":"4","author":"F. Handl","year":"2007","unstructured":"Handl, F., Kell, D.B., Knowles, J.D.: Multiobjective optimization in bioinformatics and computational biology. IEEE\/ACM Trans. Comput. Biol. Bioinform.\u00a04(2), 279\u2013292 (2007)","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinform."},{"issue":"3","key":"15_CR34","doi-asserted-by":"crossref","first-page":"316","DOI":"10.1038\/ng895","volume":"31","author":"C. Perez-Iratxeta","year":"2002","unstructured":"Perez-Iratxeta, C., Bork, P., Andrade, M.A.: Association of genes to genetically inherited diseases using data mining. Nat. Genet.\u00a031(3), 316\u2013319 (2002)","journal-title":"Nat. Genet."},{"issue":"9","key":"15_CR35","doi-asserted-by":"publisher","first-page":"2049","DOI":"10.1093\/bioinformatics\/bti268","volume":"21","author":"R. Jelier","year":"2005","unstructured":"Jelier, R., Jenster, G., Dorssers, L.C., van der Eijk, C.C., van Mulligen, E.M., Mons, B., Kors, J.A.: Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes. Bioinformatics\u00a021(9), 2049\u20132058 (2005)","journal-title":"Bioinformatics"},{"issue":"3","key":"15_CR36","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1016\/j.compbiomed.2007.11.001","volume":"38","author":"G. Kerr","year":"2008","unstructured":"Kerr, G., Ruskin, H.J., Crane, M., Doolan, P.: Techniques for clustering gene expression data. Comput. Biol. Med.\u00a038(3), 283\u2013293 (2008)","journal-title":"Comput. Biol. Med."},{"issue":"327","key":"15_CR37","doi-asserted-by":"publisher","first-page":"1619","DOI":"10.1093\/jxb\/49.327.1619","volume":"49","author":"M.J. Kearsey","year":"1998","unstructured":"Kearsey, M.J.: The principles of QTL analysis (a minimal mathematics approach). J. Exp. Bot.\u00a049(327), 1619\u20131623 (1998)","journal-title":"J. Exp. Bot."},{"issue":"7","key":"15_CR38","doi-asserted-by":"publisher","first-page":"4025","DOI":"10.1128\/IAI.73.7.4025-4033.2005","volume":"73","author":"R. Datta","year":"2005","unstructured":"Datta, R., de Schoolmeester, M.L., Hedeler, C., Paton, N.W., Brass, A.M., Else, K.J.: Identification of novel genes in intestinal tissue that are regulated after infection with an intestinal nematode parasite. Infect. Immun.\u00a073(7), 4025\u20134033 (2005)","journal-title":"Infect. Immun."}],"container-title":["Lecture Notes in Computer Science","Search Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-12310-8_15","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,6,3]],"date-time":"2020-06-03T01:00:31Z","timestamp":1591146031000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-12310-8_15"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010]]},"ISBN":["9783642123092","9783642123108"],"references-count":38,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-12310-8_15","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2010]]}}}