{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T17:03:21Z","timestamp":1725555801979},"publisher-location":"Berlin, Heidelberg","reference-count":22,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642130779"},{"type":"electronic","value":"9783642130786"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010]]},"DOI":"10.1007\/978-3-642-13078-6_6","type":"book-chapter","created":{"date-parts":[[2010,5,8]],"date-time":"2010-05-08T15:28:37Z","timestamp":1273332517000},"page":"38-49","source":"Crossref","is-referenced-by-count":4,"title":["Analysis of Temporal-spatial Co-variation within Gene Expression Microarray Data in an Organogenesis Model"],"prefix":"10.1007","author":[{"given":"Martin","family":"Ehler","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vinodh","family":"Rajapakse","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Barry","family":"Zeeberg","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian","family":"Brooks","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jacob","family":"Brown","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wojciech","family":"Czaja","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert F.","family":"Bonner","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"1","key":"6_CR1","first-page":"25","volume":"25","author":"M. Ashburner","year":"2000","unstructured":"Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., Harris, M.A., Hill, D.P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J.C., Richardson, J.E., Ringwald, M., Rubin, G.M., Sherlock, G.: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet.\u00a025(1), 25\u201329 (2000)","journal-title":"The Gene Ontology Consortium. Nat. Genet."},{"key":"6_CR2","doi-asserted-by":"crossref","unstructured":"Belkin, M., Niyogi, P.: Laplacian eigenmaps and spectral techniques for embedding and clustering. NIPS 14 (2002)","DOI":"10.7551\/mitpress\/1120.003.0080"},{"issue":"6","key":"6_CR3","doi-asserted-by":"publisher","first-page":"1373","DOI":"10.1162\/089976603321780317","volume":"15","author":"M. Belkin","year":"2003","unstructured":"Belkin, M., Niyogi, P.: Laplacian eigenmaps for dimensionality reduction and data representation. Neural. Comput.\u00a015(6), 1373\u20131396 (2003)","journal-title":"Neural. Comput."},{"issue":"278","key":"6_CR4","doi-asserted-by":"publisher","first-page":"1481","DOI":"10.1126\/science.278.5342.1481","volume":"21","author":"R.F. Bonner","year":"1997","unstructured":"Bonner, R.F., Emmert-Buck, M., Cole, K., Pohida, T., Chuaqui, R., Goldstein, S., Liotta, L.A.: Laser capture microdissection: molecular analysis of tissue. Science\u00a021(278), 1481\u20131483 (1997)","journal-title":"Science"},{"issue":"5","key":"6_CR5","doi-asserted-by":"publisher","first-page":"1462","DOI":"10.1073\/pnas.0812017106","volume":"106","author":"J.D. Brown","year":"2009","unstructured":"Brown, J.D., Dutta, S., Bharti, K., Bonner, R.F., Munson, P.J., Dawid, I.B., Akhtar, A.L., Onojafe, I.F., Alur, R.P., Gross, J.M., Hejtmancik, J.F., Jiao, X., Chan, W., Brooks, B.P.: Expression profiling during ocular development identifies 2 nlz genes with a critical role in optic fissure closure. Proc. Nat. Acad. Sci. USA\u00a0106(5), 1462\u20131467 (2009)","journal-title":"Proc. Nat. Acad. Sci. USA"},{"key":"6_CR6","doi-asserted-by":"crossref","unstructured":"Ehler, M., Rajapakse, V., Zeeberg, B., Brooks, B., Brown, J., Czaja, W., Bonner, R.F.: Supplementary materials: Analysis of temporal-spatial co-variation within gene expression microarray data in an organogenesis model (2010), http:\/\/discover.nci.nih.gov\/RetDev\/supplementaryMaterials.html","DOI":"10.1007\/978-3-642-13078-6_6"},{"key":"6_CR7","doi-asserted-by":"crossref","unstructured":"Gene Ontology Consortium: The gene ontology project in 2008. Nucleic Acids Res.\u00a036(Database issue), D440\u2013D444 (Janaury 2008)","DOI":"10.1093\/nar\/gkm883"},{"issue":"31","key":"6_CR8","doi-asserted-by":"publisher","first-page":"7378","DOI":"10.1364\/AO.37.007378","volume":"37","author":"S.R. Goldstein","year":"1998","unstructured":"Goldstein, S.R., McQueen, O.G., Bonner, R.F.: Thermal modeling of laser capture microdissection. Appl. Opt.\u00a037(31), 7378\u20137391 (1998)","journal-title":"Appl. Opt."},{"key":"6_CR9","doi-asserted-by":"publisher","DOI":"10.1007\/978-0-387-84858-7","volume-title":"The Elements of Statistical Learning","author":"T. Hastie","year":"2009","unstructured":"Hastie, T., Tibshirani, R., Friedman, J.: The Elements of Statistical Learning. Springer, Heidelberg (2009)"},{"key":"6_CR10","doi-asserted-by":"crossref","unstructured":"Hestilow, T., Huang, Y.: Clustering of gene expression data based on shape similarity. EURASIP J. Bioinform. Syst. Biol. (2009)","DOI":"10.1155\/2009\/195712"},{"key":"6_CR11","doi-asserted-by":"crossref","DOI":"10.1002\/9780470316801","volume-title":"Finding Groups in Data: An Introduction to Cluster Analysis","author":"L. Kaufman","year":"1990","unstructured":"Kaufman, L., Rousseeuw, P.: Finding Groups in Data: An Introduction to Cluster Analysis. John Wiley and Sons, London (1990)"},{"issue":"2","key":"6_CR12","doi-asserted-by":"publisher","first-page":"129","DOI":"10.1109\/TIT.1982.1056489","volume":"28","author":"S.P. Lloyd","year":"1982","unstructured":"Lloyd, S.P.: Least-squares quantization in PCM. IEEE Transactions On Information Theory\u00a028(2), 129\u2013137 (1982)","journal-title":"IEEE Transactions On Information Theory"},{"issue":"9","key":"6_CR13","doi-asserted-by":"crossref","first-page":"1122","DOI":"10.4161\/cc.6.9.4157","volume":"6","author":"D.J. Mordantameron","year":"2007","unstructured":"Mordantameron, D.J., Yang, Z., Gibbs, D., Chen, H., Kaminoh, Y., Jorgensen, A., Zeng, J., Luo, L., Brinton, E., Brinton, G., Bernstein, P.S., Brand, J.M., Zabriskie, N.A., Tang, S., Constantine, R., Tong, Z., Zhang, K.: Htra1 variant confers similar risks to geographic atrophy and neovascular age-related macular degeneration. Cell Cycle\u00a06(9), 1122\u20131125 (2007)","journal-title":"Cell Cycle"},{"issue":"7-12","key":"6_CR14","first-page":"559","volume":"2","author":"K. Pearson","year":"1901","unstructured":"Pearson, K.: On lines and planes of closest fit to systems of points in space. Philosophical Magazine\u00a02(7-12), 559\u2013572 (1901)","journal-title":"Philosophical Magazine"},{"issue":"2","key":"6_CR15","doi-asserted-by":"publisher","first-page":"250","DOI":"10.1093\/hmg\/ddp484","volume":"19","author":"S. Reichman","year":"2010","unstructured":"Reichman, S., Kalathur, R.K.R., Lambard, S., A\u00eft-Ali, N., Yang, Y., Lardenois, A., Ripp, R., Poch, O., Zack, D.J., Sahel, J., L\u00e9veillard, T.: The homeobox gene CHX10\/VSX2 regulates RdCVF promoter activity in the inner retina. Hum. Mol. Genet.\u00a019(2), 250\u2013261 (2010)","journal-title":"Hum. Mol. Genet."},{"issue":"2","key":"6_CR16","doi-asserted-by":"publisher","first-page":"560","DOI":"10.1016\/j.ydbio.2008.02.055","volume":"317","author":"C.L. Sigulinsky","year":"2008","unstructured":"Sigulinsky, C.L., Green, E.S., Clark, A.M., Levine, E.M.: Vsx2\/Chx10 ensures the correct timing and magnitude of hedgehog signaling in the mouse retina. Dev. Biol.\u00a0317(2), 560\u2013575 (2008)","journal-title":"Dev. Biol."},{"issue":"1","key":"6_CR17","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1093\/bioinformatics\/18.1.207","volume":"18","author":"A. Sturn","year":"2002","unstructured":"Sturn, A., Quackenbush, J., Trajanoski, Z.: Genesis: cluster analysis of microarray data. Bioinformatics\u00a018(1), 207\u2013208 (2002)","journal-title":"Bioinformatics"},{"issue":"5","key":"6_CR18","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1002\/j.1939-4640.2000.tb02125.x","volume":"21","author":"C.A. Su\u00e1rez-Quian","year":"2000","unstructured":"Su\u00e1rez-Quian, C.A., Goldstein, S.R., Bonner, R.F.: Laser capture microdissection: a new tool for the study of spermatogenesis. J. Androl.\u00a021(5), 601\u2013608 (2000)","journal-title":"J. Androl."},{"issue":"5298","key":"6_CR19","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1126\/science.275.5298.343","volume":"275","author":"J.N. Weinstein","year":"1997","unstructured":"Weinstein, J.N., Myers, T.G., O\u2019Connor, P.M., Friend, S.H., Fornace, J.A.J., Kohn, K.W., Fojo, T., Bates, S.E., Rubinstein, L.V., Anderson, N.L., Buolamwini, J.K., van Osdol, W.W., Monks, A.P., Scudiero, D.A., Sausville, E.A., Zaharevitz, D.W., Bunow, B., Viswanadhan, V.N., Johnson, G.S., Wittes, R.E., Paull, K.D.: An information-intensive approach to the molecular pharmacology of cancer. Science\u00a0275(5298), 343\u2013349 (1997)","journal-title":"Science"},{"issue":"5801","key":"6_CR20","doi-asserted-by":"publisher","first-page":"992","DOI":"10.1126\/science.1133811","volume":"314","author":"Z. Yang","year":"2006","unstructured":"Yang, Z., Camp, N.J., Sun, H., Tong, Z., Gibbs, D., Cameron, D.J., Chen, H., Zhao, Y., Pearson, E., Li, X., Chien, J., Dewan, A., Harmon, J., Bernstein, P.S., Shridhar, V., Zabriskie, N.A., Hoh, J., Howes, K., Zhang, K.: A variant of the HTRA1gene increases susceptibility to age-related macular degeneration. Science\u00a0314(5801), 992\u2013993 (2006)","journal-title":". Science"},{"issue":"4","key":"6_CR21","doi-asserted-by":"publisher","first-page":"28","DOI":"10.1186\/gb-2003-4-4-r28","volume":"4","author":"B. Zeeberg","year":"2003","unstructured":"Zeeberg, B., Feng, W., Wang, G., Wang, M.D., Fojo, A.T., Sunshine, M., Narasimhan, S., Kane, D.W., Reinhold, W.C., Lababidi, S., Bussey, K.J., Riss, J., Barrett, J.C., Weinstein, J.N.: GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol.\u00a04(4), R28 (2003)","journal-title":"Genome Biol."},{"key":"6_CR22","doi-asserted-by":"publisher","first-page":"168","DOI":"10.1186\/1471-2105-6-168","volume":"6","author":"B. Zeeberg","year":"2005","unstructured":"Zeeberg, B., Qin, H., Narasimhan, S., Sunshine, M., Cao, H., Kane, D.W., Reimers, M., Stephens, R.M., Bryant, D., Burt, S.K., Elnekave, E., Hari, D.M., Wynn, T.A., Cunningham-Rundles, C., Stewart, D.M., Nelson, D., Weinstein, J.N.: High-throughput GoMiner, an \u2019industrial-strength\u2019 integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of common variable immune deficiency (cvid). BMC Bioinformatics\u00a06, 168 (2005)","journal-title":"BMC Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-13078-6_6.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,26]],"date-time":"2024-03-26T16:34:08Z","timestamp":1711470848000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-13078-6_6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010]]},"ISBN":["9783642130779","9783642130786"],"references-count":22,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-13078-6_6","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2010]]}}}