{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,23]],"date-time":"2025-02-23T05:15:56Z","timestamp":1740287756069,"version":"3.37.3"},"publisher-location":"Berlin, Heidelberg","reference-count":23,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642145469"},{"type":"electronic","value":"9783642145476"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010]]},"DOI":"10.1007\/978-3-642-14547-6_19","type":"book-chapter","created":{"date-parts":[[2010,7,16]],"date-time":"2010-07-16T02:32:37Z","timestamp":1279247557000},"page":"237-249","source":"Crossref","is-referenced-by-count":2,"title":["Biomedical Article Classification Using an Agent-Based Model of T-Cell Cross-Regulation"],"prefix":"10.1007","author":[{"given":"Alaa","family":"Abi-Haidar","sequence":"first","affiliation":[]},{"given":"Luis M.","family":"Rocha","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"1","key":"19_CR1","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1111\/j.1600-065X.2007.00487.x","volume":"216","author":"J. Carneiro","year":"2007","unstructured":"Carneiro, J., Leon, K., Caramalho, \u00cd., van den Dool, C., Gardner, R., Oliveira, V., Bergman, M., Sep\u00falveda, N., Paix\u00e3o, T., Faro, J., et al.: When three is not a crowd: a Crossregulation Model of the dynamics and repertoire selection of regulatory CD4 T cells. Immunological Reviews\u00a0216(1), 48\u201368 (2007)","journal-title":"Immunological Reviews"},{"key":"19_CR2","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1007\/978-3-540-85072-4_4","volume-title":"Artificial Immune Systems","author":"A. Abi-Haidar","year":"2008","unstructured":"Abi-Haidar, A., Rocha, L.: Adaptive Spam Detection Inspired by a Cross-Regulation Model of Immune Dynamics: A Study of Concept Drift. In: Bentley, P.J., Lee, D., Jung, S. (eds.) ICARIS 2008. LNCS, vol.\u00a05132, p. 36. Springer, Heidelberg (2008)"},{"key":"19_CR3","first-page":"1","volume-title":"Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems","author":"A. Abi-Haidar","year":"2008","unstructured":"Abi-Haidar, A., Rocha, L.: Adaptive spam detection inspired by the immune system. In: Bullock, S., Noble, J., Watson, R., Bedau, M.A. (eds.) Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems, pp. 1\u20138. MIT Press, Cambridge (2008)"},{"key":"19_CR4","doi-asserted-by":"crossref","unstructured":"Krallinger, M., et al.: The BioCreative II. 5 challenge overview. In: Proc. the BioCreative II. 5 Workshop 2009 on Digital Annotations, pp. 7\u20139 (2009)","DOI":"10.1186\/gb-2008-9-s2-s4"},{"issue":"3","key":"19_CR5","first-page":"33","volume":"1","author":"G. Myers","year":"1999","unstructured":"Myers, G.: Whole-genome DNA sequencing. Computing in Science & Engineering [see also IEEE Computational Science and Engineering]\u00a01(3), 33\u201343 (1999)","journal-title":"Computing in Science & Engineering [see also IEEE Computational Science and Engineering]"},{"issue":"5235","key":"19_CR6","doi-asserted-by":"publisher","first-page":"467","DOI":"10.1126\/science.270.5235.467","volume":"270","author":"M. Schena","year":"1995","unstructured":"Schena, M., Shalon, D., Davis, R., Brown, P., et al.: Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science (Washington)\u00a0270(5235), 467\u2013470 (1995)","journal-title":"Science (Washington)"},{"issue":"5","key":"19_CR7","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1016\/j.molcel.2006.02.012","volume":"21","author":"L. Hunter","year":"2006","unstructured":"Hunter, L., Cohen, K.: Biomedical Language Processing: What\u2019s Beyond PubMed? Molecular Cell\u00a021(5), 589\u2013594 (2006)","journal-title":"Molecular Cell"},{"key":"19_CR8","unstructured":"Pubmed"},{"issue":"2","key":"19_CR9","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1038\/nrg1768","volume":"7","author":"L.J. Jensen","year":"2006","unstructured":"Jensen, L.J., Saric, J., Bork, P.: Literature mining for the biologist: from information retrieval to biological discovery. Nat. Rev. Genet.\u00a07(2), 119\u2013129 (2006)","journal-title":"Nat. Rev. Genet."},{"key":"19_CR10","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511546914","volume-title":"The Text Mining Handbook: advanced approaches in analyzing unstructured data","author":"R. Feldman","year":"2006","unstructured":"Feldman, R., Sanger, J.: The Text Mining Handbook: advanced approaches in analyzing unstructured data. Cambridge University Press, Cambridge (2006)"},{"issue":"2","key":"19_CR11","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1186\/gb-2008-9-s2-s11","volume":"9","author":"A. Abi-Haidar","year":"2008","unstructured":"Abi-Haidar, A., Kaur, J., Maguitman, A., Radivojac, P., Rechtsteiner, A., Verspoor, K., Wang, Z., Rocha, L.: Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks. Genome Biology\u00a09(2), S11 (2008)","journal-title":"Genome Biology"},{"key":"19_CR12","unstructured":"Krallinger, M., Valencia, A.: Evaluating the detection and ranking of protein interaction relevant articles: the BioCreative challenge interaction article sub-task (IAS). In: Proceedings of the Second Biocreative Challenge Evaluation Workshop (2007)"},{"key":"19_CR13","unstructured":"Kolchinsky, A., Abi-Haidar, A., Kaur, J., Hamed, A., Rocha, L.: Classication of protein-protein interaction documents using text and citation network features (in press)"},{"key":"19_CR14","unstructured":"Hofmeyr, S.: An Interpretative Introduction to the Immune System. In: Design Principles for the Immune System and Other Distributed Autonomous Systems (2001)"},{"issue":"1","key":"19_CR15","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s11047-006-9029-1","volume":"6","author":"J. Timmis","year":"2007","unstructured":"Timmis, J.: Artificial immune systems today and tomorrow. Natural Computing\u00a06(1), 1\u201318 (2007)","journal-title":"Natural Computing"},{"key":"19_CR16","doi-asserted-by":"crossref","unstructured":"Twycross, J., Cayzer, S.: An immune system approach to document classification. Master\u2019s thesis, COGS, University of Sussex, UK (2002)","DOI":"10.1007\/978-3-540-36562-4_4"},{"key":"19_CR17","unstructured":"Metsis, V., Androutsopoulos, I., Paliouras, G.: Spam Filtering with Naive Bayes\u2013Which Naive Bayes? In: Third Conference on Email and Anti-Spam, CEAS (2006)"},{"key":"19_CR18","doi-asserted-by":"crossref","DOI":"10.1007\/978-1-4615-0907-3","volume-title":"Learning to classify text using support vector machines: methods, theory, and algorithms","author":"T. Joachims","year":"2002","unstructured":"Joachims, T.: Learning to classify text using support vector machines: methods, theory, and algorithms. Kluwer Academic Publishers, Dordrecht (2002)"},{"key":"19_CR19","unstructured":"Abi-Haidar, A., Kaur, J., Maguitman, A., Radivojac, P., Retchsteiner, A., Verspoor, K., Wang, Z., Rocha, L.: Uncovering protein-protein interactions in the bibliome. In: Proceedings of the Second BioCreative Challenge Evaluation Workshop, pp. 247\u2013255 (2007) ISBN 84-933255-6-2"},{"key":"19_CR20","unstructured":"Kolchinsky, A., Abi-Haidar, A., Kaur, J., Hamed, A., Rocha, L.: Classification of protein-protein interaction documents using text and citation network features. In: BioCreative II.5 Workshop 2009: Special Session on Digital Annotations, Madrid, Spain, October 7-9, p. 34 (2009)"},{"key":"19_CR21","unstructured":"de Sepulveda, N.H.S.: How is the t-cell repertoire shaped (2009)"},{"key":"19_CR22","doi-asserted-by":"crossref","unstructured":"Porter, M.: An algorithm for suffix stripping. In: Program 1966-2006: Celebrating 40 Years of ICT in Libraries, Museums and Archives (2006)","DOI":"10.1108\/00330330610681286"},{"key":"19_CR23","series-title":"Lecture Notes in Artificial Intelligence","doi-asserted-by":"publisher","first-page":"1015","DOI":"10.1007\/11941439_114","volume-title":"AI 2006: Advances in Artificial Intelligence","author":"M. Sokolova","year":"2006","unstructured":"Sokolova, M., Japkowicz, N., Szpakowicz, S.: Beyond accuracy, f-score and roc: a family of discriminant measures for performance evaluation. In: Sattar, A., Kang, B.-h. (eds.) AI 2006. LNCS (LNAI), vol.\u00a04304, pp. 1015\u20131021. Springer, Heidelberg (2006)"}],"container-title":["Lecture Notes in Computer Science","Artificial Immune Systems"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-14547-6_19.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,22]],"date-time":"2025-02-22T23:24:15Z","timestamp":1740266655000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-14547-6_19"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010]]},"ISBN":["9783642145469","9783642145476"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-14547-6_19","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2010]]}}}