{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,24]],"date-time":"2025-02-24T05:24:26Z","timestamp":1740374666137,"version":"3.37.3"},"publisher-location":"Berlin, Heidelberg","reference-count":31,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642148330"},{"type":"electronic","value":"9783642148347"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010]]},"DOI":"10.1007\/978-3-642-14834-7_50","type":"book-chapter","created":{"date-parts":[[2010,8,10]],"date-time":"2010-08-10T16:50:55Z","timestamp":1281459055000},"page":"530-546","source":"Crossref","is-referenced-by-count":2,"title":["Fuzzy Reasoning Boolean Petri Nets Based Method for Modeling and Analysing Genetic Regulatory Networks"],"prefix":"10.1007","author":[{"given":"Raed I.","family":"Hamed","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S. I.","family":"Ahson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"R.","family":"Parveen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"50_CR1","doi-asserted-by":"publisher","first-page":"1949","DOI":"10.1109\/5.899061","volume":"88","author":"J.P. Fitch","year":"2000","unstructured":"Fitch, J.P., Sokhansanj, B.: Genomic engineering moving beyond DNA sequence to function. Proc. IEEE\u00a088, 1949\u20131971 (2000)","journal-title":"Proc. IEEE"},{"key":"50_CR2","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1016\/S0301-4622(98)00133-1","volume":"72","author":"B. Novak","year":"1998","unstructured":"Novak, B., Csikasz-Nagy, A., Gyorffy, B., Chen, K., Tyson, J.J.: Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1\/S, G2\/M and metaphase\/anaphase transitions. Biophysical Chemistry\u00a072, 185\u2013200 (1998)","journal-title":"Biophysical Chemistry"},{"key":"50_CR3","unstructured":"Chen, T., He, H.L., Church, G.M.: Modeling gene expression with differential equations. In: Pacific Symposium on Biocomputing 1999, New York, pp. 29\u201340 (1999)"},{"key":"50_CR4","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1016\/j.fss.2004.10.018","volume":"152","author":"H. Ressom","year":"2005","unstructured":"Ressom, H., Natarjan, P., Varghese, R.S., Musavi, M.T.: Applications of fuzzy logic in genomics. J. of Fuzzy Sets and Systems\u00a0152, 125\u2013138 (2005)","journal-title":"J. of Fuzzy Sets and Systems"},{"key":"50_CR5","unstructured":"Matsuno, H., Doi, A., Nagasaki, M., Miyano, S.: Hybrid Petri net representation of gene regulatory network. In: Pacific Symposium on Biocomputing, vol.\u00a05, pp. 338\u2013349 (2000)"},{"key":"50_CR6","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1007\/3-540-44919-1_2","volume-title":"Applications and Theory of Petri Nets 2003","author":"H. Matsuno","year":"2003","unstructured":"Matsuno, H., Fujita, S., Doi, A., Nagasaki, M., Miyano, S.: Towards Biopathway Modeling and Simulation. In: van der Aalst, W.M.P., Best, E. (eds.) ICATPN 2003. LNCS, vol.\u00a02679, pp. 3\u201322. Springer, Heidelberg (2003)"},{"issue":"11","key":"50_CR7","first-page":"2919","volume":"E87-A","author":"S. Fujita","year":"2004","unstructured":"Fujita, S., Matsui, M., Matsuno, H., Miyano, S.: Modeling and simulation of fission yeast cell cycle on hybrid functional Petri net. IEICE Transactions on Fundamentals of Electronics, Communication and Computer Sciences\u00a0E87-A(11), 2919\u20132928 (2004)","journal-title":"IEICE Transactions on Fundamentals of Electronics, Communication and Computer Sciences"},{"key":"50_CR8","unstructured":"Liang, S., Fuhrman, S., Somogyi, R.: REVEAL, a general reverse engineering algorithm for inference of genetic network architectures. In: Pacific Symposium on Biocomputing, New York, vol.\u00a03, pp. 18\u201329 (1998)"},{"key":"50_CR9","doi-asserted-by":"crossref","unstructured":"Akutsu, T., Miyano, S., Kuhara, S.: Identification of genetic networks from a small number of gene expression patterns under the Boolean network model. In: Pacific Symposium on Biocomputing 1999, New York, pp. 17\u201328 (1999)","DOI":"10.1142\/9789814447300_0003"},{"key":"50_CR10","doi-asserted-by":"publisher","first-page":"2271","DOI":"10.1093\/bioinformatics\/btg313","volume":"19","author":"D. Husmeier","year":"2003","unstructured":"Husmeier, D.: Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks. Bioinformatics\u00a019, 2271\u20132282 (2003)","journal-title":"Bioinformatics"},{"key":"50_CR11","doi-asserted-by":"publisher","first-page":"846","DOI":"10.1096\/fj.00-0361com","volume":"15","author":"J. Vohradsky","year":"2002","unstructured":"Vohradsky, J.: Neural networks model of gene expression. J. FASEB\u00a015, 846\u2013854 (2002)","journal-title":"J. FASEB"},{"key":"50_CR12","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1089\/10665270252833208","volume":"9","author":"H. Jong de","year":"2002","unstructured":"de Jong, H.: Modeling and Simulation of Genetic Regulatory Systems: A Literature Review. J. Comp. Biol.\u00a09, 67\u2013103 (2002)","journal-title":"J. Comp. Biol."},{"key":"50_CR13","doi-asserted-by":"crossref","unstructured":"Goss, P.J.E., Peccoud, J.: Analysis of the stabilizing effect of Rom on the genetic network controlling ColE1 plasmid replication. In: Pacific Symposium on Biocomputing 1999, New York, pp. 65\u201376 (1999)","DOI":"10.1142\/9789814447300_0007"},{"key":"50_CR14","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1007\/3-540-44919-1_2","volume-title":"Applications and Theory of Petri Nets 2003","author":"H. Matsuno","year":"2003","unstructured":"Matsuno, H., Fujita, S., Doi, A., Nagasaki, M., Miyano, S.: Towards pathway modelling and simulation. In: van der Aalst, W.M.P., Best, E. (eds.) ICATPN 2003. LNCS, vol.\u00a02679, pp. 3\u201322. Springer, Heidelberg (2003)"},{"key":"50_CR15","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1016\/0020-0190(91)90114-W","volume":"39","author":"M.L. Garg","year":"1991","unstructured":"Garg, M.L., Ahson, S.L., Gupta, P.V.: A fuzzy Petri net for knowledge representation and reasoning. Information Processing Letters\u00a039, 165\u2013171 (1991)","journal-title":"Information Processing Letters"},{"key":"50_CR16","unstructured":"Lukas, W., Ralf, Z.: Intuitive Modeling of Dynamic Systems with Petri Nets and Fuzzy Logic. In: German Conference on Bioinformatics, vol.\u00a0136, pp. 106\u2013115 (2008)"},{"key":"50_CR17","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1016\/j.datak.2006.08.003","volume":"62","author":"B. Bostan-Korpeoglu","year":"2007","unstructured":"Bostan-Korpeoglu, B., Yazici, A.: A fuzzy Petri net model for intelligent databases. Data & Knowledge Engi.\u00a062, 219\u2013247 (2007)","journal-title":"Data & Knowledge Engi."},{"key":"50_CR18","first-page":"143","volume":"60","author":"B. Fryc","year":"2004","unstructured":"Fryc, B., Pancerz, K., Peters, J.F., Suraj, Z.: On Fuzzy Reasoning Using Matrix Representation of Extended Fuzzy Petri Nets. Fundamental Informatics\u00a060, 143\u2013157 (2004)","journal-title":"Fundamental Informatics"},{"key":"50_CR19","first-page":"926","volume":"25","author":"I. Ahson","year":"1995","unstructured":"Ahson, I.: Petri net models of fuzzy neural networks. IEEE. Trans. on. SMC\u00a025, 926\u2013932 (1995)","journal-title":"IEEE. Trans. on. SMC"},{"key":"50_CR20","unstructured":"Ropers, D., de Jong, H., Page, M., Schneider, D., Geiselmann, J.: Qualitative Simulation of the Nutritional Stress Response in Escherichia coli. INRIA, Rapport de Reacherche, vol.\u00a05412, pp. 1\u201339 (2004)"},{"key":"50_CR21","first-page":"161","volume-title":"Bacterial Stress Responses","author":"R. Hengge-Aronis","year":"2000","unstructured":"Hengge-Aronis, R.: The general stress response in Escherichia coli. In: Storz, G., Hengge-Aronis, R. (eds.) Bacterial Stress Responses, pp. 161\u2013178. ASM Press, Washington (2000)"},{"key":"50_CR22","first-page":"437","volume":"22","author":"S.A. Kauffman","year":"1969","unstructured":"Kauffman, S.A.: Metabolic stability and epigenesis in randomly constructed genetic nets. The. Biol.\u00a022, 437\u2013467 (1969)","journal-title":"The. Biol."},{"key":"50_CR23","volume-title":"Fuzzy Sets Engineering","author":"W. Pedrycz","year":"1995","unstructured":"Pedrycz, W.: Fuzzy Sets Engineering. CRC Press, Boca Raton (1995)"},{"key":"50_CR24","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1109\/21.87067","volume":"18","author":"C.G. Looney","year":"1988","unstructured":"Looney, C.G.: Fuzzy Petri nets for rule-based decision making. IEEE Trans. Systems Man and Cybernetics\u00a018, 178\u2013183 (1988)","journal-title":"IEEE Trans. Systems Man and Cybernetics"},{"key":"50_CR25","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1109\/69.60794","volume":"2","author":"S.M. Chen","year":"1990","unstructured":"Chen, S.M., Ke, J.S., Chang, J.F.: Knowledge Representation Using Fuzzy Petri Nets. IEEE Trans. on Knowledge and Data Engineering\u00a02, 311\u2013319 (1990)","journal-title":"IEEE Trans. on Knowledge and Data Engineering"},{"key":"50_CR26","doi-asserted-by":"crossref","DOI":"10.7551\/mitpress\/3926.001.0001","volume-title":"An Introduction to Fuzzy Sets: Analysis and Design","author":"W. Pedrycz","year":"1998","unstructured":"Pedrycz, W., Gomide, F.: An Introduction to Fuzzy Sets: Analysis and Design. MIT Press, Cambridge (1998)"},{"key":"50_CR27","doi-asserted-by":"crossref","unstructured":"Carvalho, J.P., Tom\u00e9, J.A.: Rule Based Fuzzy Cognitive Maps\u2014qualitative systems dynamics. In: Proc. 19th International Conference of the North American Fuzzy Information Processing Society, NAFIPS 2000, Atlanta, pp. 407\u2013411 (2000)","DOI":"10.1109\/NAFIPS.2000.877462"},{"key":"50_CR28","doi-asserted-by":"crossref","unstructured":"Carvalho, J.P., Tom\u00e9, J.A.: Interpolated linguistic terms: uncertainty representation in rule based fuzzy systems. In: Proc. 22nd International Conference of the North American Fuzzy Info. Proc. Society, NAFIPS 2003, Chicago, pp. 93\u201398 (2003)","DOI":"10.1109\/NAFIPS.2003.1226762"},{"key":"50_CR29","first-page":"325","volume":"3","author":"Y. Jian","year":"2008","unstructured":"Jian, Y., Jintao, L., Hongzhou, S., Xiaoguang, G., Zhenmin, Z.: A Fuzzy Petri Net Model towards Context-Awareness Based Personalized Recommendation. IEEE Transactions, FSKD\u00a0(3), 325\u2013330 (2008)","journal-title":"IEEE Transactions, FSKD"},{"key":"50_CR30","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1007\/11885191_9","volume-title":"Computational Methods in Systems Biology","author":"L.J. Steggles","year":"2006","unstructured":"Steggles, L.J., Banks, R., Wipat, A.: Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets. In: Priami, C. (ed.) CMSB 2006. LNCS (LNBI), vol.\u00a04210, pp. 127\u2013141. Springer, Heidelberg (2006)"},{"key":"50_CR31","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1146\/annurev.genet.38.072902.091347","volume":"38","author":"B. Paul","year":"2004","unstructured":"Paul, B., Ross, W., Gaal, T., Gourse, R.: rRNA transcription in E. coli. Ann. Rev. Gen.\u00a038, 749\u2013770 (2004)","journal-title":"Ann. Rev. Gen."}],"container-title":["Communications in Computer and Information Science","Contemporary Computing"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-14834-7_50.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,24]],"date-time":"2025-02-24T02:15:23Z","timestamp":1740363323000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-14834-7_50"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010]]},"ISBN":["9783642148330","9783642148347"],"references-count":31,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-14834-7_50","relation":{},"ISSN":["1865-0929","1865-0937"],"issn-type":[{"type":"print","value":"1865-0929"},{"type":"electronic","value":"1865-0937"}],"subject":[],"published":{"date-parts":[[2010]]}}}