{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T19:02:38Z","timestamp":1725562958300},"publisher-location":"Berlin, Heidelberg","reference-count":22,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642151194"},{"type":"electronic","value":"9783642151200"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010]]},"DOI":"10.1007\/978-3-642-15120-0_13","type":"book-chapter","created":{"date-parts":[[2010,8,19]],"date-time":"2010-08-19T03:17:52Z","timestamp":1282187872000},"page":"164-178","source":"Crossref","is-referenced-by-count":5,"title":["Integrative Information Management for Systems Biology"],"prefix":"10.1007","author":[{"given":"Neil","family":"Swainston","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel","family":"Jameson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Irena","family":"Spasic","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pedro","family":"Mendes","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Norman W.","family":"Paton","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"10","key":"13_CR1","doi-asserted-by":"publisher","first-page":"1155","DOI":"10.1038\/nbt1492","volume":"26","author":"M.J. Herrgard","year":"2008","unstructured":"Herrgard, M.J., et al.: A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat. Biotechnol.\u00a026(10), 1155\u20131160 (2008)","journal-title":"Nat. Biotechnol."},{"key":"13_CR2","doi-asserted-by":"publisher","DOI":"10.1002\/3527603603","volume-title":"Systems Biology in practice","author":"E. Klipp","year":"2005","unstructured":"Klipp, E., Herwig, R., Kowald, A., Wierling, C., Lehrach, H.: Systems Biology in practice. Wiley, Chichester (2005)"},{"key":"13_CR3","first-page":"37","volume":"7","author":"I. Rojas","year":"2007","unstructured":"Rojas, I., Golebiewski, M., Kania, R., Krebs, O., Mir, S., Weidemann, A., Wittig, U.: Storing and annotating of kinetic data. Silico Biol.\u00a07 (suppl. 2), S37\u2013S44 (2007)","journal-title":"Silico Biol."},{"key":"13_CR4","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1007\/978-1-59745-525-1_2","volume":"500","author":"P. Mendes","year":"2009","unstructured":"Mendes, P., Hoops, S., Sahle, S., Gauges, R., Dada, J., Kummer, U.: Computational modeling of biochemical networks using COPASI. Methods Mol. Biol.\u00a0500, 17\u201359 (2009)","journal-title":"Methods Mol. Biol."},{"issue":"8","key":"13_CR5","doi-asserted-by":"crossref","first-page":"1416","DOI":"10.1074\/mcp.M600456-MCP200","volume":"6","author":"J. Rivers","year":"2007","unstructured":"Rivers, J., Simpson, D.M., Robertson, D.H., Gaskell, S.J., Beynon, R.J.: Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT. Mol. Cell. Proteomics\u00a06(8), 1416\u20131427 (2007) (Epub May 17, 2007)","journal-title":"Mol. Cell. Proteomics"},{"key":"13_CR6","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1186\/1471-2105-7-281","volume":"7","author":"I. Spasic","year":"2006","unstructured":"Spasic, I., et al.: MeMo: a hybrid SQL\/XML approach to metabolomic data management for functional genomics. BMC Bioinformatics\u00a07, 281 (2006)","journal-title":"BMC Bioinformatics"},{"key":"13_CR7","doi-asserted-by":"publisher","first-page":"659","DOI":"10.1093\/nar\/gkj138","volume":"34","author":"P. Jones","year":"2006","unstructured":"Jones, P., C\u00f4t\u00e9, R.G., Martens, L., Quinn, A.F., Taylor, C.F., Derache, W., Hermjakob, H., Apweiler, R.: PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res.\u00a034, D659\u2013D663 (2006)","journal-title":"Nucleic Acids Res."},{"key":"13_CR8","doi-asserted-by":"publisher","first-page":"3045","DOI":"10.1093\/bioinformatics\/bth361","volume":"20","author":"T. Oinn","year":"2004","unstructured":"Oinn, T., et al.: Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics\u00a020, 3045\u20133054 (2004)","journal-title":"Bioinformatics"},{"issue":"4","key":"13_CR9","doi-asserted-by":"publisher","first-page":"524","DOI":"10.1093\/bioinformatics\/btg015","volume":"19","author":"M. Hucka","year":"2003","unstructured":"Hucka, M., et al.: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics\u00a019(4), 524\u2013531 (2003)","journal-title":"Bioinformatics"},{"key":"13_CR10","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1007\/978-3-642-02879-3_15","volume-title":"DILS 2009","author":"J.O. Dada","year":"2009","unstructured":"Dada, J.O., Mendes, P.: Design and Architecture of Web Services for Simulation of Biochemical Systems. In: Paton, N.W., Missier, P., Hedeler, C. (eds.) DILS 2009. LNCS, vol.\u00a05647, pp. 182\u2013195. Springer, Heidelberg (2009)"},{"key":"13_CR11","doi-asserted-by":"crossref","unstructured":"Dada, J.O., Spasic, I., Paton, N.W., Mendes, P.: SBRML: a markup language for associating systems biology data with models. Bioinformatics (Feburary 21, 2010) (Epub ahead of print)","DOI":"10.1093\/bioinformatics\/btq069"},{"key":"13_CR12","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1186\/1477-5956-5-4","volume":"5","author":"J.A. Siepen","year":"2007","unstructured":"Siepen, J.A., et al.: An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQTM. Proteome Sci.\u00a05, 4 (2007)","journal-title":"Proteome Sci."},{"issue":"18","key":"13_CR13","doi-asserted-by":"publisher","first-page":"3551","DOI":"10.1002\/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2","volume":"20","author":"D.N. Perkins","year":"1999","unstructured":"Perkins, D.N., et al.: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis\u00a020(18), 3551\u20133567 (1999)","journal-title":"Electrophoresis"},{"key":"13_CR14","doi-asserted-by":"crossref","unstructured":"Nilse, L., et al.: SILACAnalyzer - a tool for differential quantitation of stable isotope derived data. In: CIBB, 6th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, Genoa (2009)","DOI":"10.1007\/978-3-642-14571-1_4"},{"key":"13_CR15","doi-asserted-by":"publisher","first-page":"532","DOI":"10.1186\/1471-2105-7-532","volume":"7","author":"K. Garwood","year":"2006","unstructured":"Garwood, K., et al.: Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. BMC Bioinformatics\u00a07, 532 (2006)","journal-title":"BMC Bioinformatics"},{"key":"13_CR16","doi-asserted-by":"crossref","unstructured":"Swainston, N., et al.: Enzyme kinetics informatics: from instrument to browser. FEBS J. (submitted 2010)","DOI":"10.1111\/j.1742-4658.2010.07778.x"},{"key":"13_CR17","unstructured":"Michaelis, L., Menten, M.L.: Die Kinetik der Invertinwirkung. Biochem. Z, 49, 333\u2013369 (1913)"},{"key":"13_CR18","unstructured":"Jameson, D., et al.: Lightweight Experimental Data Management for Systems Biology (submitted 2010)"},{"key":"13_CR19","doi-asserted-by":"publisher","first-page":"344","DOI":"10.1093\/nar\/gkm791","volume":"36","author":"K. Degtyarenko","year":"2008","unstructured":"Degtyarenko, K., et al.: ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res.\u00a036, D344\u2013D350 (2008)","journal-title":"Nucleic Acids Res."},{"key":"13_CR20","doi-asserted-by":"publisher","first-page":"329","DOI":"10.1016\/S0076-6879(02)50972-1","volume":"350","author":"L. Issel-Tarver","year":"2002","unstructured":"Issel-Tarver, L., et al.: Saccharomyces Genome Database. Methods Enzymol.\u00a0350, 329\u2013346 (2002)","journal-title":"Methods Enzymol."},{"key":"13_CR21","doi-asserted-by":"publisher","first-page":"567","DOI":"10.1016\/j.jprot.2008.11.010","volume":"72","author":"M. Schneider","year":"2009","unstructured":"Schneider, M., et al.: The UniProtKB\/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. J. Proteomics\u00a072, 567\u2013573 (2009)","journal-title":"J. Proteomics"},{"key":"13_CR22","doi-asserted-by":"publisher","first-page":"287","DOI":"10.1093\/bioinformatics\/btm578","volume":"24","author":"P. Li","year":"2008","unstructured":"Li, P., et al.: Automated manipulation of systems biology models using libSBML within Taverna workflows. Bioinformatics\u00a024, 287\u2013289 (2008)","journal-title":"Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Data Integration in the Life Sciences"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-15120-0_13.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,11,23]],"date-time":"2020-11-23T22:01:16Z","timestamp":1606168876000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-15120-0_13"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010]]},"ISBN":["9783642151194","9783642151200"],"references-count":22,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-15120-0_13","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2010]]}}}