{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,9]],"date-time":"2025-09-09T20:39:18Z","timestamp":1757450358387},"publisher-location":"Berlin, Heidelberg","reference-count":12,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642153952"},{"type":"electronic","value":"9783642153969"}],"license":[{"start":{"date-parts":[[2010,1,1]],"date-time":"2010-01-01T00:00:00Z","timestamp":1262304000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010]]},"DOI":"10.1007\/978-3-642-15396-9_16","type":"book-chapter","created":{"date-parts":[[2010,9,6]],"date-time":"2010-09-06T03:00:16Z","timestamp":1283742016000},"page":"167-175","source":"Crossref","is-referenced-by-count":3,"title":["A Propagator for Maximum Weight String Alignment with Arbitrary Pairwise Dependencies"],"prefix":"10.1007","author":[{"given":"Alessandro","family":"Dal Pal\u00f9","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mathias","family":"M\u00f6hl","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sebastian","family":"Will","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"16_CR1","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1186\/1471-2105-8-271","volume":"8","author":"M. Bauer","year":"2007","unstructured":"Bauer, M., Klau, G.W., Reinert, K.: Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization. BMC Bioinformatics\u00a08, 271 (2007)","journal-title":"BMC Bioinformatics"},{"key":"16_CR2","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"140","DOI":"10.1007\/978-3-540-74450-4_13","volume-title":"Combinatorics, Algorithms, Probabilistic and Experimental Methodologies","author":"G. Blin","year":"2007","unstructured":"Blin, G., Fertin, G., Rusu, I., Sinoquet, C.: Extending the hardness of RNA secondary structure comparison. In: Chen, B., Paterson, M., Zhang, G. (eds.) ESCAPE 2007. LNCS, vol.\u00a04614, pp. 140\u2013151. Springer, Heidelberg (2007)"},{"key":"16_CR3","doi-asserted-by":"publisher","first-page":"100","DOI":"10.1145\/565196.565209","volume-title":"Proceedings of the Sixth Annual International Conference on Computational Biology (RECOMB 2002)","author":"A. Caprara","year":"2002","unstructured":"Caprara, A., Lancia, G.: Structural alignment of large-size proteins via lagrangian relaxation. In: Proceedings of the Sixth Annual International Conference on Computational Biology (RECOMB 2002), pp. 100\u2013108. ACM Press, New York (2002)"},{"key":"16_CR4","doi-asserted-by":"publisher","first-page":"705","DOI":"10.1016\/0022-2836(82)90398-9","volume":"162","author":"O. Gotoh","year":"1982","unstructured":"Gotoh, O.: An improved algorithm for matching biological sequences. Journal of Molecular Biology\u00a0162, 705\u2013708 (1982)","journal-title":"Journal of Molecular Biology"},{"issue":"4-5","key":"16_CR5","doi-asserted-by":"publisher","first-page":"347","DOI":"10.1007\/s10732-006-6550-4","volume":"12","author":"W.-J. Hoeve","year":"2006","unstructured":"Hoeve, W.-J., Pesant, G., Rousseau, L.-M.: On global warming: Flow-based soft global constraints. Journal of Heuristics\u00a012(4-5), 347\u2013373 (2006)","journal-title":"Journal of Heuristics"},{"issue":"2","key":"16_CR6","doi-asserted-by":"publisher","first-page":"371","DOI":"10.1089\/10665270252935511","volume":"9","author":"T. Jiang","year":"2002","unstructured":"Jiang, T., Lin, G., Ma, B., Zhang, K.: A general edit distance between RNA structures. Journal of Computational Biology\u00a09(2), 371\u2013388 (2002)","journal-title":"Journal of Computational Biology"},{"issue":"16-17","key":"16_CR7","doi-asserted-by":"publisher","first-page":"1457","DOI":"10.1016\/j.artint.2009.07.003","volume":"173","author":"R. Marinescu","year":"2009","unstructured":"Marinescu, R., Dechter, R.: And\/or branch-and-bound search for combinatorial optimization in graphical models. Artif. Intell.\u00a0173(16-17), 1457\u20131491 (2009)","journal-title":"Artif. Intell."},{"issue":"6-7","key":"16_CR8","doi-asserted-by":"publisher","first-page":"1105","DOI":"10.1002\/bip.360290621","volume":"29","author":"J.S. McCaskill","year":"1990","unstructured":"McCaskill, J.S.: The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers\u00a029(6-7), 1105\u20131119 (1990)","journal-title":"Biopolymers"},{"key":"16_CR9","doi-asserted-by":"crossref","unstructured":"M\u00f6hl, M., Will, S., Backofen, R.: Lifting prediction to alignment of RNA pseudoknots. Journal of Computational Biology (2010) (accepted)","DOI":"10.1089\/cmb.2009.0168"},{"key":"16_CR10","doi-asserted-by":"publisher","first-page":"482","DOI":"10.1016\/0196-8858(81)90046-4","volume":"2","author":"T.F. Smith","year":"1981","unstructured":"Smith, T.F., Waterman, M.S.: Comparison of biosequences. Adv. Appl. Math.\u00a02, 482\u2013489 (1981)","journal-title":"Adv. Appl. Math."},{"issue":"1-4","key":"16_CR11","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1023\/A:1021801522545","volume":"118","author":"M.A. Trick","year":"2003","unstructured":"Trick, M.A.: A dynamic programming approach for consistency and propagation for knapsack constraints. Annals OR\u00a0118(1-4), 73\u201384 (2003)","journal-title":"Annals OR"},{"issue":"4","key":"16_CR12","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1371\/journal.pcbi.0030065","volume":"3","author":"S. Will","year":"2007","unstructured":"Will, S., Reiche, K., Hofacker, I.L., Stadler, P.F., Backofen, R.: Inferring non-coding RNA families and classes by means of genome-scale structure-based clustering. PLOS Computational Biology\u00a03(4), e65 (2007)","journal-title":"PLOS Computational Biology"}],"container-title":["Lecture Notes in Computer Science","Principles and Practice of Constraint Programming \u2013 CP 2010"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-15396-9_16","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T17:44:08Z","timestamp":1558287848000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-15396-9_16"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010]]},"ISBN":["9783642153952","9783642153969"],"references-count":12,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-15396-9_16","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2010]]}}}