{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,5]],"date-time":"2025-03-05T15:44:57Z","timestamp":1741189497880,"version":"3.38.0"},"publisher-location":"Berlin, Heidelberg","reference-count":27,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642163449"},{"type":"electronic","value":"9783642163456"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011]]},"DOI":"10.1007\/978-3-642-16345-6_14","type":"book-chapter","created":{"date-parts":[[2011,5,16]],"date-time":"2011-05-16T16:31:03Z","timestamp":1305563463000},"page":"299-313","source":"Crossref","is-referenced-by-count":0,"title":["Statistical Analysis of Time Course Microarray Data"],"prefix":"10.1007","author":[{"given":"Lingyan","family":"Ruan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ming","family":"Yuan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2011,4,9]]},"reference":[{"key":"14_CR1_14","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1089\/10665270360688057","volume":"10","author":"Z Bar-Joseph","year":"2003","unstructured":"Bar-Joseph, Z., Gerber, G., Gifford, D. K., Jaakkola, T. S., & Simon, I. (2003). Continous representations of time-series gene expression data. Journal of Computational Biology, 10, 341\u2013356.","journal-title":"Journal of Computational Biology"},{"key":"14_CR2_14","doi-asserted-by":"crossref","unstructured":"Do, K.-A., Mueller, P., & Vanucci, M. (Eds.). (2006). Bayesian inference for gene expression and proteomics. Cambridge University Press.","DOI":"10.1017\/CBO9780511584589"},{"key":"14_CR3_14","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780198524847.001.0001","volume-title":"Analysis of longintudinal data","author":"PJ Diggle","year":"2002","unstructured":"Diggle, P. J., Heagerty, P., Liang, K.-Y., & Zeger, S. L. (2002). Analysis of longintudinal data (2nd ed.). New York: Oxford University Press.","edition":"2"},{"key":"14_CR4_14","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1152\/physiolgenomics.00172.2002","volume":"13","author":"MG Edwards","year":"2003","unstructured":"Edwards, M. G., Sarkar, D., Klopp, R., Morrow, J. D., Weindruch, R., & Prolla, T. A. (2003). Age-related impairment of the transcriptional response to oxidative stress in the mouse heart. Physiological Genomics, 13, 119\u2013127.","journal-title":"Physiological Genomics"},{"key":"14_CR5_14","doi-asserted-by":"publisher","first-page":"14863","DOI":"10.1073\/pnas.95.25.14863","volume":"95","author":"MB Eisen","year":"1998","unstructured":"Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998). Cluster analysis and display of genome-wide expression patterns. Proceedings of the National Academy of Sciences, 95, 14863\u201314868.","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"14_CR6_14","doi-asserted-by":"publisher","first-page":"i159","DOI":"10.1093\/bioinformatics\/bti1022","volume":"21","author":"J Ernst","year":"2005","unstructured":"Ernst, J., Nau, G. J., & Bar-Joseph, Z. (2005). Clustering short time series gene expression data. Bioinformatics, 21, i159\u2013i168.","journal-title":"Bioinformatics"},{"key":"14_CR7_14","doi-asserted-by":"publisher","first-page":"534","DOI":"10.1111\/j.1541-0420.2005.00505.x","volume":"62","author":"F Hong","year":"2006","unstructured":"Hong, F., & Li, H. (2006). Functional hierarchical models for identifying genes with different time-course expression profiles. Biometrics, 62, 534\u2013544.","journal-title":"Biometrics"},{"key":"14_CR8_14","doi-asserted-by":"publisher","first-page":"8409","DOI":"10.1073\/pnas.150242097","volume":"97","author":"NS Holter","year":"2000","unstructured":"Holter, N. S., Mitra, M., Maritan, A., Cieplak, M., Banavar, J. R., & Fedoroff, N. V. (2000). Fundamental patterns underlying gene expression profiles: Simplicity from complexity. Proc. Natl. Acad. Sci. USA, 97, 8409\u20138414.","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"14_CR9_14","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1080\/10618600.1996.10474713","volume":"5","author":"R Ihaka","year":"1996","unstructured":"Ihaka, R., & Gentleman, R. (1996). R: A language for data analysis and graphics. Journal of Computational and Graphical Statistics, 5, 299\u2013314.","journal-title":"Journal of Computational and Graphical Statistics"},{"key":"14_CR10_14","doi-asserted-by":"publisher","first-page":"837","DOI":"10.1016\/S0092-8674(02)01139-X","volume":"111","author":"SM Kaech","year":"2002","unstructured":"Kaech, S.M., Hemby, S., Kersh, E., & Ahmed, R. (2002). Molecular and functional profiling of memory CD8 T cell differentiation. Cell, 111, 837\u2013851.","journal-title":"Cell"},{"issue":"4","key":"14_CR11_14","doi-asserted-by":"publisher","first-page":"474","DOI":"10.1093\/bioinformatics\/btg014","volume":"19","author":"Y Luan","year":"2003","unstructured":"Luan, Y., & Li, H. (2003). Clustering of time-course gene expression data using a mixed-effects model with B-splines. Bioinformatics, 19(4), 474\u2013482.","journal-title":"Bioinformatics"},{"key":"14_CR12_14","doi-asserted-by":"publisher","first-page":"694","DOI":"10.1093\/bioinformatics\/btg068","volume":"19","author":"T Park","year":"2003","unstructured":"Park, T., Yi, S. G., & Lee, S. (2003). Statistical tests for identifying differentially expressed genes in time-course microarray experiments. Bioinformatics, 19, 694\u2013703.","journal-title":"Bioinformatics"},{"key":"14_CR13_14","doi-asserted-by":"publisher","DOI":"10.1007\/b97411","volume-title":"The Analysis of gene expression data: Methods and software","author":"G Parmigiani","year":"2003","unstructured":"Parmigiani, G., Garrett, E., Irizarry, R., & Zeger, S. (2003). The Analysis of gene expression data: Methods and software. New York: Springer Verlag."},{"key":"14_CR14_14","doi-asserted-by":"publisher","first-page":"517","DOI":"10.1146\/annurev.pa.22.040182.002505","volume":"22","author":"A Poland","year":"1982","unstructured":"Poland, A., & Knutson, J. C. (1982). 2,3,7,8-tetrachlorodibenzo-p-dioxin and related halogenated aromatic hydrocarbons: Examination of the mechanism of toxicity. Annual Review of Pharmacology and Toxicology, 22, 517\u2013554.","journal-title":"Annual Review of Pharmacology and Toxicology"},{"key":"14_CR15_14","doi-asserted-by":"publisher","first-page":"9121","DOI":"10.1073\/pnas.132656399","volume":"99","author":"MF Ramoni","year":"2002","unstructured":"Ramoni, M. F., Sebastiani, P., & Kohane, I. S. (2002). Cluster analysis of gene expression dynamics. Proceedings of the National Academy of Sciences, 99, 9121\u20139126.","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"14_CR16_14","doi-asserted-by":"publisher","first-page":"i283","DOI":"10.1093\/bioinformatics\/bth937","volume":"20","author":"A Schliep","year":"2003","unstructured":"Schliep, A., Steinhoff, C., & Sch\u00f6nhuth, A. (2003). Robust inference of groups in gene expression time-courses using mixtures of HMMs. Bioinformatics, 20, i283\u2013i289.","journal-title":"Bioinformatics"},{"key":"14_CR17_14","doi-asserted-by":"crossref","first-page":"3273","DOI":"10.1091\/mbc.9.12.3273","volume":"9","author":"PT Spellman","year":"1998","unstructured":"Spellman, P. T., Sherlock, G., Zhang, M., Iyer, V. R., Anders, K., Eisen, M. B., et al. (1998). Comprehensive identification of cell-cycle regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization. Molecular Biology of the Cell, 9, 3273\u20133297.","journal-title":"Molecular Biology of the Cell"},{"key":"14_CR18_14","doi-asserted-by":"publisher","first-page":"12837","DOI":"10.1073\/pnas.0504609102","volume":"102","author":"JD Storey","year":"2005","unstructured":"Storey, J. D., Xuai, W., Leek, J. T., Tompkins, R. G., & Davis, R. W. (2005). Significance analysis of time course microarray experiments. Proceedings of the National Academy of Sciences of the United States of America, 102, 12837\u201312842.","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"14_CR19_14","doi-asserted-by":"publisher","first-page":"2387","DOI":"10.1214\/009053606000000759","volume":"34","author":"YC Tai","year":"2006","unstructured":"Tai, Y. C., & Speed, T. P. (2006). A multivariate empirical Bayes statistic for replicated microarray time course data. Annals of Statistics, 34, 2387\u20132412.","journal-title":"Annals of Statistics"},{"key":"14_CR20_14","doi-asserted-by":"publisher","first-page":"2907","DOI":"10.1073\/pnas.96.6.2907","volume":"96","author":"P Tamayo","year":"1999","unstructured":"Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., et al. (1999). Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proceedings of the National Academy of Sciences of the United States of America, 96, 2907\u20132912.","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"14_CR21_14","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1038\/10343","volume":"22","author":"S Tavazoie","year":"1999","unstructured":"Tavazoie, S., Hughes, J., Campbell, M., Cho, R., & Church, G. (1999). Systematic determination of genetic network architecture. Nature Genetics, 22, 281\u2013285.","journal-title":"Nature Genetics"},{"key":"14_CR22_14","doi-asserted-by":"publisher","first-page":"1152","DOI":"10.1126\/science.1120499","volume":"310","author":"B Tu","year":"2005","unstructured":"Tu, B., Kudlicki, A., Rowicka, M., & McKnight, S. (2005). Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes. Science, 310, 1152\u20131158.","journal-title":"Science"},{"key":"14_CR23_14","doi-asserted-by":"crossref","first-page":"657","DOI":"10.1177\/019262339802600510","volume":"26","author":"CL Wilson","year":"1998","unstructured":"Wilson, C. L., & Safe, S. (1998). Mechanisms of ligand-induced aryl hydrocarbon receptor mediated biochemical and toxic responses. Toxicologic Pathology, 26, 657\u2013671.","journal-title":"Toxicologic Pathology"},{"issue":"2","key":"14_CR24_14","doi-asserted-by":"publisher","first-page":"442","DOI":"10.1214\/07-AOAS118","volume":"1","author":"H Wu","year":"2007","unstructured":"Wu, H., Yuan, M., Kaech, S., & Halloran, M. (2007). A statistical analysis of memory CD8 T cell differentiation: An application of a hierarchical state space model to a short time course microarray experiment. Annals of Applied Statistics, 1(2), 442\u2013458.","journal-title":"Annals of Applied Statistics"},{"key":"14_CR25_14","doi-asserted-by":"publisher","first-page":"1754","DOI":"10.1016\/j.csda.2005.11.017","volume":"51","author":"M Yuan","year":"2006","unstructured":"Yuan, M. (2006). Flexible temporal expression profile modelling using the Gaussian process. Computational Statistics and Data Analysis, 51, 1754\u20131764.","journal-title":"Computational Statistics and Data Analysis"},{"key":"14_CR26_14","doi-asserted-by":"publisher","first-page":"1323","DOI":"10.1198\/016214505000000394","volume":"101","author":"M Yuan","year":"2006","unstructured":"Yuan, M., & Kendziorski, C. (2006). Hidden markov modles for microarray time course data in multiple biological conditions (with discussion). Journal of the American Statistical Association, 101, 1323\u20131340.","journal-title":"Journal of the American Statistical Association"},{"key":"14_CR27_14","volume-title":"HMM for microarray time course data in multiple biological conditions (Technical Report # 178)","author":"M Yuan","year":"2003","unstructured":"Yuan, M., Kendziorski, C., Park, F., Porter, J., Hayes, K., & Bradfield, C. (2003). HMM for microarray time course data in multiple biological conditions (Technical Report # 178). Department of Biostatistics, University of Wisconsin."}],"container-title":["Handbook of Statistical Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-16345-6_14","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,3,5]],"date-time":"2025-03-05T15:14:56Z","timestamp":1741187696000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-16345-6_14"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011]]},"ISBN":["9783642163449","9783642163456"],"references-count":27,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-16345-6_14","relation":{},"subject":[],"published":{"date-parts":[[2011]]}}}