{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,6]],"date-time":"2024-09-06T00:45:19Z","timestamp":1725583519076},"publisher-location":"Berlin, Heidelberg","reference-count":23,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642163449"},{"type":"electronic","value":"9783642163456"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011]]},"DOI":"10.1007\/978-3-642-16345-6_4","type":"book-chapter","created":{"date-parts":[[2011,5,16]],"date-time":"2011-05-16T12:31:03Z","timestamp":1305549063000},"page":"73-85","source":"Crossref","is-referenced-by-count":1,"title":["Computational Promoter Prediction in a Vertebrate Genome"],"prefix":"10.1007","author":[{"given":"Michael Q.","family":"Zhang","sequence":"first","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2011,4,9]]},"reference":[{"issue":"12","key":"4_CR1_4","doi-asserted-by":"publisher","first-page":"i313","DOI":"10.1093\/bioinformatics\/btp191","volume":"25","author":"T Abeel","year":"2009","unstructured":"Abeel, T., Van\u00a0de\u00a0Peer, Y., & Saeys, Y. (2009). Toward a gold standard for promoter prediction evaluation. Bioinformatics, 25(12), i313\u2013i320.","journal-title":"Bioinformatics"},{"issue":"11","key":"4_CR2_4","doi-asserted-by":"publisher","first-page":"1467","DOI":"10.1038\/nbt1032","volume":"22","author":"VB Bajic","year":"2004","unstructured":"Bajic, V. B., Tan, S. L., Suzuki, Y., & Sugano, S. (2004). Promoter prediction analysis on the whole human genome. Nature Biotechnology, 22(11), 1467\u20131473.","journal-title":"Nature Biotechnology"},{"key":"4_CR3_4","volume-title":"Classification and regression trees","author":"L Breiman","year":"1984","unstructured":"Breiman, L., Friedman, J., Olshen, R., & Stone, C. (1984). Classification and regression trees. Belmont, CA: Wadsworth International Group."},{"issue":"12","key":"4_CR4_4","doi-asserted-by":"publisher","first-page":"1446","DOI":"10.1038\/ng1917","volume":"38","author":"MJ Buck","year":"2006","unstructured":"Buck, M. J., & Lieb, J. D. (2006). A chromatin-mediated mechanism for specification of conditional transcription factor targets. Nature Genetics, 38(12), 1446\u20131451.","journal-title":"Nature Genetics"},{"issue":"7261","key":"4_CR5_4","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1038\/nature08450","volume":"461","author":"BR Cairns","year":"2009","unstructured":"Cairns, B. R. (2009). The logic of chromatin architecture and remodeling at promoters. Nature, 461(7261), 193\u2013198.","journal-title":"Nature"},{"issue":"9","key":"4_CR6_4","doi-asserted-by":"publisher","first-page":"1061","DOI":"10.1093\/bioinformatics\/btf867","volume":"19","author":"M Dettling","year":"2003","unstructured":"Dettling, M., & Buhlmann, P. (2003). Boosting for tumor classification with gene expression data. Bioinformatics, 19(9), 1061\u20131069.","journal-title":"Bioinformatics"},{"issue":"3","key":"4_CR7_4","doi-asserted-by":"publisher","first-page":"458","DOI":"10.1101\/gr.216102","volume":"12","author":"TA Down","year":"2002","unstructured":"Down, T. A., & Hubbard, T. J. P. (2002). Computational detection and location of transcription start sites in mammalian genomic DNA. Genome Research, 12(3), 458\u2013461.","journal-title":"Genome Research"},{"issue":"18","key":"4_CR8_4","doi-asserted-by":"publisher","first-page":"2895","DOI":"10.4161\/cc.8.18.9536","volume":"8","author":"GJ Faulkner","year":"2009","unstructured":"Faulkner, G. J., & Carninci, P. (2009). Altruistic functions for selfish DNA. Cell Cycle, 8(18), 2895\u20132900.","journal-title":"Cell Cycle"},{"key":"4_CR9_4","unstructured":"Freund, Y., & Schapire, R. (1996). Experiments with a new boosting algorithm. Machine learning: Proceedings of the thirteenth international conference (pp. 148\u2013156). Italy."},{"issue":"2","key":"4_CR10_4","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1214\/aos\/1016218223","volume":"28","author":"J Friedman","year":"2000","unstructured":"Friedman, J., Hastie, T., & Tibshirani, R. (2000). Additive logistic regression: A statistical view of boosting. The Annals of Statistics, 28(2), 337\u2013407.","journal-title":"The Annals of Statistics"},{"key":"4_CR11_4","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1101\/gr.6831208","volume":"18","author":"MC Frith","year":"2008","unstructured":"Frith, M. C., Valen, E., Krogh, A., Hayashizaki, Y., Carninci, P., & Sandelin, A. (2008). A code for transcription initiation in mammalian genomes. Genome Research, 18, 1\u201312.","journal-title":"Genome Research"},{"issue":"7261","key":"4_CR12_4","doi-asserted-by":"publisher","first-page":"186","DOI":"10.1038\/nature08449","volume":"461","author":"NJ Fuda","year":"2009","unstructured":"Fuda, N. J., Ardehali, M. B., & Lis, J. T. (2009). Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature, 461(7261), 186\u2013192.","journal-title":"Nature"},{"issue":"1","key":"4_CR13_4","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1145\/174644.174647","volume":"41","author":"M Kearns","year":"1994","unstructured":"Kearns, M., & Valiant, L. (1994). Cryptographic limitations on learning boolean formulae and finite automata. Journal of the ACM (JACM), 41(1), 67\u201395.","journal-title":"Journal of the ACM (JACM)"},{"key":"4_CR14_4","doi-asserted-by":"crossref","DOI":"10.1007\/978-1-4899-3244-0","volume-title":"Generalized linear models","author":"P McCullagh","year":"1983","unstructured":"McCullagh, P., & Nelder, J. A. (1983). Generalized linear models. London: Chapman and Hall."},{"key":"4_CR15_4","doi-asserted-by":"publisher","first-page":"669","DOI":"10.1038\/nrg2641","volume":"10","author":"PJ Park","year":"2009","unstructured":"Park, P. J. (2009). ChIP\u2013seq: Advantages and challenges of a maturing technology. Nature Reviews Genetics, 10, 669\u2013680.","journal-title":"Nature Reviews Genetics"},{"issue":"6","key":"4_CR16_4","doi-asserted-by":"publisher","first-page":"424","DOI":"10.1038\/nrg2026","volume":"8","author":"A Sandelin","year":"2007","unstructured":"Sandelin, A., Carninci, P., Lenhard, B., Ponjavic, J., Hayashizaki, Y., & Hume, D. (2007). Mammalian RNA polymerase II core promoters: Insights from genome-wide studies. Nature Reviews Genetics, 8(6), 424\u2013436.","journal-title":"Nature Reviews Genetics"},{"issue":"2","key":"4_CR17_4","first-page":"197","volume":"5","author":"RE Schapire","year":"1990","unstructured":"Schapire, R. E. (1990). The strength of weak learnability. Machine Learning, 5(2), 197\u2013227.","journal-title":"Machine Learning"},{"issue":"14","key":"4_CR18_4","doi-asserted-by":"publisher","first-page":"e472","DOI":"10.1093\/bioinformatics\/btl250","volume":"22","author":"S Sonnenburg","year":"2006","unstructured":"Sonnenburg, S., Zien, A., & Ratsch, G. (2006). ARTS: Accurate recognition of transcription starts in human. Bioinformatics, 22(14), e472\u2013e480.","journal-title":"Bioinformatics"},{"key":"4_CR19_4","first-page":"211","volume":"1","author":"ME Tipping","year":"2001","unstructured":"Tipping, M. E. (2001). Sparse Bayesian learning and the relevance vector machine. Journal of Machine Learning, 1, 211\u2013244.","journal-title":"Journal of Machine Learning"},{"issue":"2","key":"4_CR20_4","doi-asserted-by":"publisher","first-page":"266","DOI":"10.1101\/gr.081638.108","volume":"19","author":"X Wang","year":"2009","unstructured":"Wang, X., Xuan, Z., Zhao, X., Li, Y., & Zhang, M. (2009). High-resolution human core-promoter prediction with CoreBoost_HM. Genome Research, 19(2), 266\u2013275.","journal-title":"Genome Research"},{"issue":"5","key":"4_CR21_4","doi-asserted-by":"publisher","first-page":"498","DOI":"10.1093\/bib\/bbp027","volume":"10","author":"J Zeng","year":"2009","unstructured":"Zeng, J., Zhu, S., & Yan, H. (2009). Towards accurate human promoter recognition: A review of currently used sequence features and classification methods. Briefings in Bioinformatics, 10(5), 498\u2013508.","journal-title":"Briefings in Bioinformatics"},{"issue":"Suppl. 6","key":"4_CR22_4","doi-asserted-by":"publisher","first-page":"S3","DOI":"10.1186\/1471-2105-8-S6-S3","volume":"8","author":"MQ Zhang","year":"2007","unstructured":"Zhang, M. Q. (2007). Computational analyses of eukaryotic promoters. BMC Bioinformatics, 8(Suppl. 6), S3.","journal-title":"BMC Bioinformatics"},{"issue":"2","key":"4_CR23_4","doi-asserted-by":"publisher","first-page":"R17","DOI":"10.1186\/gb-2007-8-2-r17","volume":"8","author":"X Zhao","year":"2007","unstructured":"Zhao, X., Xuan, Z., & Zhang, M. (2007). Boosting with stumps for predicting transcription start sites. Genome Biology, 8(2), R17.","journal-title":"Genome Biology"}],"container-title":["Handbook of Statistical Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-16345-6_4","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,23]],"date-time":"2019-05-23T04:10:51Z","timestamp":1558584651000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-16345-6_4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011]]},"ISBN":["9783642163449","9783642163456"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-16345-6_4","relation":{},"subject":[],"published":{"date-parts":[[2011]]}}}