{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,2]],"date-time":"2025-03-02T06:04:10Z","timestamp":1740895450915,"version":"3.38.0"},"publisher-location":"Berlin, Heidelberg","reference-count":40,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642183041"},{"type":"electronic","value":"9783642183058"}],"license":[{"start":{"date-parts":[[2011,1,1]],"date-time":"2011-01-01T00:00:00Z","timestamp":1293840000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011]]},"DOI":"10.1007\/978-3-642-18305-8_14","type":"book-chapter","created":{"date-parts":[[2011,1,21]],"date-time":"2011-01-21T06:58:40Z","timestamp":1295593120000},"page":"147-161","source":"Crossref","is-referenced-by-count":1,"title":["Simple Evolution of Complex Crystal Species"],"prefix":"10.1007","author":[{"given":"Rebecca","family":"Schulman","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Erik","family":"Winfree","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"14_CR1","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4612-1650-6","volume-title":"Introduction to Artifical Life","author":"C. Adami","year":"1998","unstructured":"Adami, C.: Introduction to Artifical Life. Springer, Berlin (1998)"},{"key":"14_CR2","doi-asserted-by":"publisher","first-page":"2586","DOI":"10.1021\/nl052038l","volume":"5","author":"R.D. Barish","year":"2005","unstructured":"Barish, R.D., Rothemund, P.W.K., Winfree, E.: Two computational primitives for algorithmic self-assembly: Copying and counting. Nano Letters\u00a05, 2586\u20132592 (2005)","journal-title":"Nano Letters"},{"issue":"15","key":"14_CR3","doi-asserted-by":"publisher","first-page":"6054","DOI":"10.1073\/pnas.0808736106","volume":"106","author":"R.D. Barish","year":"2009","unstructured":"Barish, R.D., Schulman, R., Rothemund, P.W.K., Winfree, E.: An information-bearing seed for nucleating algorithmic self-assembly. Proceedings of the National Academy of Sciences USA\u00a0106(15), 6054\u20136059 (2009)","journal-title":"Proceedings of the National Academy of Sciences USA"},{"key":"14_CR4","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1039\/b616612c","volume":"136","author":"T. Bullard","year":"2007","unstructured":"Bullard, T., Freudenthal, J., Avagyan, S., Kahr, B.: Test of Cairns-Smith\u2019s crystals-as-genes hypothesis. Faraday Discussions\u00a0136, 231\u2013245 (2007)","journal-title":"Faraday Discussions"},{"key":"14_CR5","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1016\/0022-5193(66)90178-0","volume":"10","author":"A.G. Cairns-Smith","year":"1966","unstructured":"Cairns-Smith, A.G.: The origin of life and the nature of the primitive gene. Journal of Theoretical Biology\u00a010, 53\u201388 (1966)","journal-title":"Journal of Theoretical Biology"},{"key":"14_CR6","volume-title":"Genetic Takeover and the Mineral Origins of Life","author":"A.G. Cairns-Smith","year":"1982","unstructured":"Cairns-Smith, A.G.: Genetic Takeover and the Mineral Origins of Life. Cambridge University Press, Cambridge (1982)"},{"key":"14_CR7","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1080\/01442358809353213","volume":"7","author":"A.G. Cairns-Smith","year":"1988","unstructured":"Cairns-Smith, A.G.: The chemistry of materials for artificial Darwinian systems. International Reviews in Physical Chemistry\u00a07, 209\u2013250 (1988)","journal-title":"International Reviews in Physical Chemistry"},{"key":"14_CR8","volume-title":"Clay Minerals and the Origin of Life","author":"A.G. Cairns-Smith","year":"1986","unstructured":"Cairns-Smith, A.G., Hartman, H.: Clay Minerals and the Origin of Life. Cambridge University Press, Cambridge (1986)"},{"issue":"9","key":"14_CR9","first-page":"2912","volume":"7","author":"H.-L. Chen","year":"2007","unstructured":"Chen, H.-L., Schulman, R., Goel, A., Winfree, E.: Reducing facet nucleation during algorithmic self-assembly. Nano Letters\u00a07(9), 2912\u20132919 (2007)","journal-title":"Nano Letters"},{"key":"14_CR10","series-title":"Lecture Notes in Computer Science","volume-title":"DNA Computing","year":"2004","unstructured":"Chen, J., Reif, J.H. (eds.): DNA 9. LNCS, vol.\u00a02943. Springer, Heidelberg (2004)"},{"key":"14_CR11","doi-asserted-by":"crossref","unstructured":"Cook, M., Rothemund, P.W.K., Winfree, E.: Self-assembled circuit patterns. In: Chen and Reif [10], pp. 91\u2013107","DOI":"10.1007\/978-3-540-24628-2_11"},{"key":"14_CR12","doi-asserted-by":"publisher","first-page":"6881","DOI":"10.1021\/j100335a010","volume":"92","author":"M. Eigen","year":"1988","unstructured":"Eigen, M., McCaskill, J., Schuster, P.: Molecular quasi-species. Journal of Physical Chemistry\u00a092, 6881\u20136891 (1988)","journal-title":"Journal of Physical Chemistry"},{"key":"14_CR13","doi-asserted-by":"publisher","first-page":"3211","DOI":"10.1021\/bi00064a003","volume":"32","author":"T.-J. Fu","year":"1993","unstructured":"Fu, T.-J., Seeman, N.C.: DNA double-crossover molecules. Biochemistry\u00a032, 3211\u20133220 (1993)","journal-title":"Biochemistry"},{"key":"14_CR14","doi-asserted-by":"publisher","first-page":"636","DOI":"10.1038\/437636a","volume":"437","author":"S. Griffith","year":"2005","unstructured":"Griffith, S., Goldwater, D., Jacobson, J.M.: Self-replication from random parts. Nature\u00a0437, 636 (2005)","journal-title":"Nature"},{"issue":"4","key":"14_CR15","doi-asserted-by":"publisher","first-page":"46307","DOI":"10.1103\/PhysRevE.82.046307","volume":"82","author":"R.F. Hariadi","year":"2010","unstructured":"Hariadi, R.F., Yurke, B.: Elongational-flow-induced scission of DNA nanotubes in laminar flow. Physical Review E\u00a082(4), 046307 (2010), http:\/\/pre.aps.org\/abstract\/PRE\/v82\/i4\/e046307","journal-title":"Physical Review E"},{"key":"14_CR16","doi-asserted-by":"crossref","unstructured":"Klavins, E.: Universal self-replication using graph grammars. In: 2004 International Conference on MEMS, NANO and Smart Systems (ICMENS 2004), pp. 198\u2013204 (2004)","DOI":"10.1109\/ICMENS.2004.1508947"},{"issue":"5967","key":"14_CR17","doi-asserted-by":"publisher","first-page":"869","DOI":"10.1126\/science.1183218","volume":"327","author":"J. Li","year":"2010","unstructured":"Li, J., Browning, S., Mahal, S.P., Oelschlegel, A.M., Weissmann, C.: Darwinian evolution of prions in cell culture. Science\u00a0327(5967), 869\u2013872 (2010)","journal-title":"Science"},{"issue":"5918","key":"14_CR18","doi-asserted-by":"publisher","first-page":"1229","DOI":"10.1126\/science.1167856","volume":"323","author":"T.A. Lincoln","year":"2009","unstructured":"Lincoln, T.A., Joyce, G.F.: Self-sustained replication of an RNA enzyme. Science\u00a0323(5918), 1229\u20131232 (2009)","journal-title":"Science"},{"key":"14_CR19","doi-asserted-by":"publisher","first-page":"5437","DOI":"10.1021\/ja9900398","volume":"121","author":"C. Mao","year":"1999","unstructured":"Mao, C., Sun, W., Seeman, N.C.: Designed two-dimensional DNA Holliday junction arrays visualized by atomic force microscopy. Journal of the American Chemical Society\u00a0121, 5437\u20135443 (1999)","journal-title":"Journal of the American Chemical Society"},{"key":"14_CR20","doi-asserted-by":"publisher","DOI":"10.1142\/5172","volume-title":"Crystal Growth for Beginners","author":"I.V. Markov","year":"2003","unstructured":"Markov, I.V.: Crystal Growth for Beginners. World Scientific, Singapore (2003)"},{"key":"14_CR21","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1073\/pnas.58.1.217","volume":"58","author":"D. Mills","year":"1967","unstructured":"Mills, D., Peterson, N., Spiegelman, S.: An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule. Proceedings of the National Academy of Sciences USA\u00a058, 217\u2013224 (1967)","journal-title":"Proceedings of the National Academy of Sciences USA"},{"key":"14_CR22","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1096\/fasebj.7.1.7678564","volume":"7","author":"L.E. Orgel","year":"1993","unstructured":"Orgel, L.E., Crick, F.H.C.: Anticipating an RNA world. Some past speculations on the origin of life: Where are they today? FASEB Journal\u00a07, 238\u2013239 (1993)","journal-title":"FASEB Journal"},{"issue":"50","key":"14_CR23","doi-asserted-by":"publisher","first-page":"16344","DOI":"10.1021\/ja044319l","volume":"126","author":"P.W.K. Rothemund","year":"2004","unstructured":"Rothemund, P.W.K., Ekani-Nkodo, A., Papadakis, N., Kumar, A., Fygenson, D.K., Winfree, E.: Design and characterization of programmable DNA nanotubes. Journal of the American Chemical Society\u00a0126(50), 16344\u201316352 (2004)","journal-title":"Journal of the American Chemical Society"},{"key":"14_CR24","doi-asserted-by":"publisher","first-page":"424","DOI":"10.1371\/journal.pbio.0020424","volume":"2","author":"P.W.K. Rothemund","year":"2004","unstructured":"Rothemund, P.W.K., Papadakis, N., Winfree, E.: Algorithmic self-assembly of DNA Sierpinski triangles. PLOS Biology\u00a02, 424\u2013436 (2004)","journal-title":"PLOS Biology"},{"key":"14_CR25","first-page":"459","volume-title":"Symposium on Theory of Computing (STOC)","author":"P.W.K. Rothemund","year":"2000","unstructured":"Rothemund, P.W.K., Winfree, E.: The program-size complexity of self-assembled squares. In: Symposium on Theory of Computing (STOC), pp. 459\u2013468. ACM, New York (2000)"},{"key":"14_CR26","series-title":"Lecture Notes in Artificial Intelligence","doi-asserted-by":"publisher","first-page":"734","DOI":"10.1007\/11553090_74","volume-title":"Advances in Artificial Life","author":"R. Schulman","year":"2005","unstructured":"Schulman, R., Winfree, E.: Self-replication and evolution of DNA crystals. In: Capcarr\u00e8re, M.S., Freitas, A.A., Bentley, P.J., Johnson, C.G., Timmis, J. (eds.) ECAL 2005. LNCS (LNAI), vol.\u00a03630, pp. 734\u2013743. Springer, Heidelberg (2005)"},{"issue":"39","key":"14_CR27","doi-asserted-by":"publisher","first-page":"15236","DOI":"10.1073\/pnas.0701467104","volume":"104","author":"R. Schulman","year":"2007","unstructured":"Schulman, R., Winfree, E.: Synthesis of crystals with a programmable kinetic barrier to nucleation. Proceedings of the National Academy of Sciences USA\u00a0104(39), 15236\u201315241 (2007)","journal-title":"Proceedings of the National Academy of Sciences USA"},{"key":"14_CR28","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1007\/s11047-007-9046-8","volume":"7","author":"R. Schulman","year":"2008","unstructured":"Schulman, R., Winfree, E.: How crystals that sense and respond to their environments could evolve. Natural Computing\u00a07, 219\u2013237 (2008)","journal-title":"Natural Computing"},{"key":"14_CR29","doi-asserted-by":"publisher","first-page":"1581","DOI":"10.1137\/070680266","volume":"39","author":"R. Schulman","year":"2009","unstructured":"Schulman, R., Winfree, E.: Programmable control of nucleation for algorithmic self-assembly. SIAM Journal on Computation\u00a039, 1581\u20131616 (2009)","journal-title":"SIAM Journal on Computation"},{"issue":"1-2","key":"14_CR30","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1023\/A:1006746807104","volume":"31","author":"D. Segr\u00e9","year":"2001","unstructured":"Segr\u00e9, D., Ben-Eli, D., Deamer, D.W., Lancet, D.: The lipid world. Origins of Life and Evolution of Biospheres\u00a031(1-2), 119\u2013145 (2001)","journal-title":"Origins of Life and Evolution of Biospheres"},{"issue":"4","key":"14_CR31","first-page":"452","volume":"52","author":"G. W\u00e4chters\u00e4user","year":"1988","unstructured":"W\u00e4chters\u00e4user, G.: Before enzymes and templates: theory of surface metabolism. Microbiology and Molecular Biology Reviews\u00a052(4), 452\u2013484 (1988)","journal-title":"Microbiology and Molecular Biology Reviews"},{"key":"14_CR32","doi-asserted-by":"publisher","first-page":"11649","DOI":"10.1021\/ja00105a004","volume":"116","author":"P. Walde","year":"1994","unstructured":"Walde, P., Wick, R., Fresta, M., Mangone, A., Luisi, P.L.: Autopoetic self-reproduction of fatty acid vesicles. Journal of the American Chemical Society\u00a0116, 11649\u201311654 (1994)","journal-title":"Journal of the American Chemical Society"},{"issue":"3-4","key":"14_CR33","doi-asserted-by":"publisher","first-page":"227","DOI":"10.3109\/10409239109114069","volume":"26","author":"J.G. Wetmur","year":"1991","unstructured":"Wetmur, J.G., Fresco, J.: DNA probes: Applications of the principles of nucleic acid hybridization. Critical Reviews in Biochemistry and Molecular Biology\u00a026(3-4), 227\u2013259 (1991)","journal-title":"Critical Reviews in Biochemistry and Molecular Biology"},{"key":"14_CR34","unstructured":"Winfree, E.: The xgrow simulator, http:\/\/www.dna.caltech.edu\/Xgrow\/"},{"key":"14_CR35","series-title":"DIMACS","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1090\/dimacs\/027\/09","volume-title":"DNA Based Computers","author":"E. Winfree","year":"1996","unstructured":"Winfree, E.: On the computational power of DNA annealing and ligation. In: Lipton, R.J., Baum, E.B. (eds.) DNA Based Computers. DIMACS, vol.\u00a027, pp. 199\u2013221. American Mathematical Society, Providence (1996)"},{"key":"14_CR36","unstructured":"Winfree, E.: Simulations of computing by self-assembly. Technical Report CS-TR:1998.22, Caltech (1998)"},{"key":"14_CR37","doi-asserted-by":"crossref","unstructured":"Winfree, E., Bekbolatov, R.: Proofreading tile sets: Error-correction for algorithmic self-assembly. In: Chen and Reif [10], pp. 126\u2013144","DOI":"10.1007\/978-3-540-24628-2_13"},{"key":"14_CR38","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1038\/28998","volume":"394","author":"E. Winfree","year":"1998","unstructured":"Winfree, E., Liu, F., Wenzler, L.A., Seeman, N.C.: Design and self-assembly of two-dimensional DNA crystals. Nature\u00a0394, 539\u2013544 (1998)","journal-title":"Nature"},{"key":"14_CR39","volume-title":"The Global Dynamics of Cellular Automata: An Atlas of Basin of Attraction Fields of One-Dimensional Cellular Automata","author":"A. Wuensche","year":"1992","unstructured":"Wuensche, A., Lesser, M.: The Global Dynamics of Cellular Automata: An Atlas of Basin of Attraction Fields of One-Dimensional Cellular Automata. Perseus Books, Cambridge (1992)"},{"key":"14_CR40","doi-asserted-by":"publisher","first-page":"824","DOI":"10.1126\/science.1157312","volume":"321","author":"P. Yin","year":"2008","unstructured":"Yin, P., Hariadi, R.F., Sahu, S., Choi, H.M.T., Park, S.H., LaBean, T.H., Reif, J.H.: Programming DNA tube circumferences. Science\u00a0321, 824\u2013826 (2008)","journal-title":"Science"}],"container-title":["Lecture Notes in Computer Science","DNA Computing and Molecular Programming"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-18305-8_14","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,3,2]],"date-time":"2025-03-02T00:30:51Z","timestamp":1740875451000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-18305-8_14"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011]]},"ISBN":["9783642183041","9783642183058"],"references-count":40,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-18305-8_14","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2011]]}}}