{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T08:40:38Z","timestamp":1743064838871,"version":"3.40.3"},"publisher-location":"Berlin, Heidelberg","reference-count":27,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642200441"},{"type":"electronic","value":"9783642200458"}],"license":[{"start":{"date-parts":[[2011,1,1]],"date-time":"2011-01-01T00:00:00Z","timestamp":1293840000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2011,1,1]],"date-time":"2011-01-01T00:00:00Z","timestamp":1293840000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011]]},"DOI":"10.1007\/978-3-642-20045-8_13","type":"book-chapter","created":{"date-parts":[[2011,7,26]],"date-time":"2011-07-26T09:58:46Z","timestamp":1311674326000},"page":"261-277","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Managing and Analysing Genomic Data Using HPC and Clouds"],"prefix":"10.1007","author":[{"given":"Bartosz","family":"Dobrzelecki","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amrey","family":"Krause","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michal","family":"Piotrowski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Neil Chue","family":"Hong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2011,5,17]]},"reference":[{"issue":"3","key":"13_CR1","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1007\/s10723-004-6745-6","volume":"2","author":"A Finkelstein","year":"2004","unstructured":"Finkelstein, A., Gryce, C., Lewis-Bowen, J.: Relating requirements and architectures: A study of data-grids. J. Grid Comput. 2(3), 207\u2013222 (2004) doi: 10.1007\/s10723-004-6745-6","journal-title":"J. Grid Comput."},{"issue":"1926","key":"13_CR2","doi-asserted-by":"publisher","first-page":"4133","DOI":"10.1098\/rsta.2010.0166","volume":"368","author":"B Dobrzelecki","year":"2010","unstructured":"Dobrzelecki, B., Krause, A., Hume, A., Grant, A., Antonioletti, M., Alemu, T., Atkinson, M., Jackson, M., Theocharopoulos, E.: Integrating distributed data sources with ogsa-dai dqp and views. Phil. Trans. Roy. Soc. A, 368(1926), 4133\u20134145 (2010) doi: 10.1098\/rsta.2010.0166","journal-title":"Phil. Trans. Roy. Soc. A"},{"key":"13_CR3","isbn-type":"print","doi-asserted-by":"publisher","DOI":"10.1002\/9780470391365","volume-title":"High Performance Parallel Database Processing and Grid Databases","author":"D Taniar","year":"2008","unstructured":"Taniar, D., Leung, C.H.C., Rahayu, W., Goel, S.: High Performance Parallel Database Processing and Grid Databases. Wiley, NY (2008). ISBN 978-0-470-10762-1","ISBN":"https:\/\/id.crossref.org\/isbn\/9780470107621"},{"key":"13_CR4","doi-asserted-by":"publisher","first-page":"171","DOI":"10.1002\/cpe.923","volume":"17","author":"E Laure","year":"2005","unstructured":"Laure, E., Stockinger, H., Stockinger, K.: Performance engineering in data grids. Concurrency Comput. Pract. Ex. 17, 171\u2013191 (2005) doi: 10.1002\/cpe.923","journal-title":"Concurrency Comput. Pract. Ex."},{"key":"13_CR5","unstructured":"Special issue on data management on cloud computing platforms. Technical Report\u00a01, March 2009"},{"key":"13_CR6","unstructured":"The Apache Software Foundation. The apache hadoop project. http:\/\/hadoop.apache.org (2011). Accessed 22 June 2011"},{"key":"13_CR7","unstructured":"Dean, J., Ghemawat, S.: Mapreduce: Simplified data processing on large clusters. In: Symposium on Operating System Design and Implementation (OSDI), pp. 137\u2013150 (2004)"},{"key":"13_CR8","volume-title":"Requirements for science data bases and scidb","author":"M Stonebraker","year":"2009","unstructured":"Stonebraker, M., Becla, J., Dewitt, D., Lim, K.-T., Maier, D., Ratzesberger, O., Zdonik, S.: Requirements for science data bases and scidb. In: Conference on Innovative Data Systems Research (CIDR), January 2009"},{"issue":"12","key":"13_CR9","doi-asserted-by":"publisher","first-page":"1585","DOI":"10.1093\/bioinformatics\/18.12.1585","volume":"18","author":"E Hubbell","year":"2002","unstructured":"Hubbell, E., Liu, W.-M., Mei, R.: Robust estimators for expression analysis. Bioinformatics 18(12), 1585\u20131592 (2002). doi:10.1093\/bioinformatics\/18.12.1585","journal-title":"Bioinformatics"},{"key":"13_CR10","doi-asserted-by":"crossref","unstructured":"Irizarry, R.A., Bolstad, B.M., Collin, F., Cope, L.M., Hobbs, B., Speed, T.P.: Summaries of affymetrix GeneChip probe level data. Nucl. Acids Res. 31(4), e15 (2003). doi:10.1093\/ nar\/gng015","DOI":"10.1093\/nar\/gng015"},{"key":"13_CR11","unstructured":"R Development Core Team. R: A Language and Environment for Statistical Computing. R\u00a0Foundation for Statistical Computing, Vienna, Austria, 2010. URL http:\/\/www.R-project.org."},{"issue":"10","key":"13_CR12","doi-asserted-by":"publisher","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","volume":"5","author":"RC Gentleman","year":"2004","unstructured":"Gentleman, R.C., Carey, V.J., Bates, D.M., Bolstad, B., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J., Hornik, K., Hothorn, T., Huber, W., Iacus, S., Irizarry, R., Leisch, F., Li, C., Maechler, M., Rossini, A.J., Sawitzki, G., Smith, C., Smyth, G., Tierney, L., Yang, J.Y., Zhang, J.: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5(10), R80 (2004). doi: 10.1186\/gb-2004-5-10-r80","journal-title":"Genome Biol."},{"issue":"1","key":"13_CR13","doi-asserted-by":"publisher","first-page":"558","DOI":"10.1186\/1471-2105-9-558","volume":"9","author":"J Hill","year":"2008","unstructured":"Hill, J., Hambley, M., Forster, T., Mewissen, M., Sloan, T.M., Scharinger, F., Trew, A., Ghazal, P.: SPRINT: a new parallel framework for R. BMC Bioinform. 9(1), 558 (2008). doi:10.1186\/1471-2105-9-558","journal-title":"BMC Bioinform."},{"issue":"1","key":"13_CR14","doi-asserted-by":"publisher","first-page":"1","DOI":"10.18637\/jss.v031.i01","volume":"31","author":"M Schmidberger","year":"2009","unstructured":"Schmidberger, M., Morgan, M., Eddelbuettel, D., Yu, H., Tierney, L., Mansmann, U.: State of the art in parallel computing with R. J. Stat. Software 31(1), 1\u201327 (2009)","journal-title":"J. Stat. Software"},{"issue":"11","key":"13_CR15","doi-asserted-by":"publisher","first-page":"1363","DOI":"10.1093\/bioinformatics\/btp236","volume":"25","author":"MC Schatz","year":"2009","unstructured":"Schatz, M.C.: CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics 25(11), 1363\u20131369 (2009). doi:10.1093\/bioinformatics\/btp236","journal-title":"Bioinformatics"},{"key":"13_CR16","doi-asserted-by":"crossref","unstructured":"Langmead, B., Schatz, M., Lin, J., Pop, M., Salzberg, S.: Searching for snps with cloud computing. Genome Biol. 10(11) (2009) doi: 10.1186\/gb-2009-10-11-r134","DOI":"10.1186\/gb-2009-10-11-r134"},{"key":"13_CR17","doi-asserted-by":"crossref","unstructured":"Matthews, S., Williams, T.: Mrsrf: An efficient mapreduce algorithm for analyzing large collections of evolutionary trees. BMC Bioinformatics 11(Suppl 1) (2010) doi: 10.1186\/1471-2105-11-S1-S15","DOI":"10.1186\/1471-2105-11-S1-S15"},{"key":"13_CR18","volume-title":"NIPS","author":"CT Chu","year":"2006","unstructured":"Chu, C.T., Kim, S.K., Lin, Y.A., Yu, Y., Bradski, G.R., Ng, A.Y., Olukotun, K.: Map-reduce for machine learning on multicore. In: Sch\u00f6lkopf, B., Platt, J.C., Hoffman, T. (eds.) NIPS. MIT, MA (2006)"},{"key":"13_CR19","unstructured":"The apache mahout project. http:\/\/mahout.apache.org"},{"key":"13_CR20","unstructured":"Guha, S.: Rhipe \u2013 R and hadoop integrated processing environment. http:\/\/www.stat.purdue.edu\/sguha\/rhipe"},{"key":"13_CR21","volume-title":"Algorithms for Clustering Data","author":"AK Jain","year":"1988","unstructured":"Jain, A.K., Dubes, R.C.: Algorithms for Clustering Data. Prentice-Hall, CA (1988)"},{"issue":"8","key":"13_CR22","doi-asserted-by":"publisher","first-page":"575","DOI":"10.1080\/0094965031000136012","volume":"73","author":"M van der Laan","year":"2003","unstructured":"van der Laan, M., Pollard, K., Bryan, J.: A new partitioning around medoids algorithm. J. Stat. Comput. Simul. 73(8), 575\u2013584 (2003). doi:10.1080\/0094965031000136012","journal-title":"J. Stat. Comput. Simul."},{"key":"13_CR23","unstructured":"Cran: The comprehensive r archive network. URL http:\/\/cran.r-project.org"},{"key":"13_CR24","doi-asserted-by":"crossref","unstructured":"Ekanayake, J., Pallickara, S., Fox, G.: MapReduce for data intensive scientific analyses. In: eScience, 2008. eScience \u201908. IEEE Computer Society, Los Alamitos, CA, USA, 2008, pp. 277\u2013284. doi:10.1109\/eScience.2008.59","DOI":"10.1109\/eScience.2008.59"},{"key":"13_CR25","unstructured":"Twister: A runtime for iterative mapreduce. URL http:\/\/www.iterativemapreduce.org"},{"key":"13_CR26","doi-asserted-by":"crossref","unstructured":"Ranger, C., Raghuraman, R., Penmetsa, A., Bradski, G., Kozyrakis, C.: Evaluating mapreduce for multi-core and multiprocessor systems. In: HPCA \u201907: Proceedings of the 2007 IEEE 13th International Symposium on High Performance Computer Architecture. IEEE Computer Society, February 2007. ISBN 1-4244-0804-0. doi: 10.1109\/HPCA.2007.346181","DOI":"10.1109\/HPCA.2007.346181"},{"key":"13_CR27","unstructured":"Malstone: A stylized benchmark for data intensive computing. URL http:\/\/code.google.com\/p\/malgen\/wiki\/Malstone"}],"container-title":["Grid and Cloud Database Management"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-20045-8_13","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,17]],"date-time":"2023-04-17T05:05:50Z","timestamp":1681707950000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-642-20045-8_13"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011]]},"ISBN":["9783642200441","9783642200458"],"references-count":27,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-20045-8_13","relation":{},"subject":[],"published":{"date-parts":[[2011]]},"assertion":[{"value":"17 May 2011","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}