{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,6]],"date-time":"2024-09-06T07:11:24Z","timestamp":1725606684695},"publisher-location":"Berlin, Heidelberg","reference-count":12,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642239564"},{"type":"electronic","value":"9783642239571"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011]]},"DOI":"10.1007\/978-3-642-23957-1_49","type":"book-chapter","created":{"date-parts":[[2011,9,10]],"date-time":"2011-09-10T12:43:04Z","timestamp":1315658584000},"page":"443-452","source":"Crossref","is-referenced-by-count":0,"title":["Towards Optimal Microarray Universal Reference Sample Designs: An In-Silico Optimization Approach"],"prefix":"10.1007","author":[{"given":"George","family":"Potamias","sequence":"first","affiliation":[]},{"given":"Sofia","family":"Kaforou","sequence":"additional","affiliation":[]},{"given":"Dimitris","family":"Kafetzopoulos","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"49_CR1","unstructured":"Design of Microarray Experiments. Genomics & Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research, NCI, NIH, DHHS, \n                    \n                      http:\/\/discover.nci.nih.gov\/microarrayAnalysis\/Experimental.Design.jsp"},{"key":"49_CR2","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1186\/1471-2164-7-109","volume":"7","author":"R.L. Khan","year":"2006","unstructured":"Khan, R.L., Gonye, E.E., Gao, S., Schwaber, J.S.: A universal reference sample derived from clone vector for improved detection of differential gene expression. BMC Genomics\u00a07, 109 (2006), doi:10.1186\/1471-2164-7-109","journal-title":"BMC Genomics"},{"key":"49_CR3","unstructured":"Manduchi, E., White, P.: Issues Related to Experimental Design and Normalization. WhitePaper-20040629, Report, Computational Biology and Informatics Laboratory, University of Pennsylvania, \n                    \n                      http:\/\/www.cbil.upenn.edu\/downloads\/EPConDB\/download\/Protocols\/WhitePaper-20040629.doc"},{"key":"49_CR4","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1016\/S0076-6879(99)03014-1","volume":"303","author":"M.B. Eisen","year":"1999","unstructured":"Eisen, M.B., Brown, P.O.: DNA arrays for analysis of gene expression. Methods Enzymol.\u00a0303, 179\u2013205 (1999)","journal-title":"Methods Enzymol."},{"key":"49_CR5","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1186\/1471-2164-5-20","volume":"5","author":"N. Novoradovskaya","year":"2004","unstructured":"Novoradovskaya, N., Whitfield, M.L., et al.: Universal Reference RNA as a standard for microarray experiments. BMC Genomics\u00a05, 20 (2004), doi:10.1186\/1471-2164-5-20","journal-title":"BMC Genomics"},{"issue":"10","key":"49_CR6","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1093\/nar\/gnh078","volume":"32","author":"B.A. Williams","year":"2004","unstructured":"Williams, B.A., Gwirtz, R.M., Wold, B.J.: Genomic DNA as a cohybridization standard for mammalian microarray measurements. Nucleic Acids Res.\u00a032(10), e81 (2004)","journal-title":"Nucleic Acids Res."},{"key":"49_CR7","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1186\/1471-2164-6-66","volume":"6","author":"M. Gadgil","year":"2005","unstructured":"Gadgil, M., Lian, W., Gadgil, C., Kapur, V., Hu, W.S.: An analysis of the use of genomic DNA as a universal reference in two channel DNA microarrays. BMC Genomics\u00a06, 66 (2005)","journal-title":"BMC Genomics"},{"issue":"21","key":"49_CR8","doi-asserted-by":"publisher","first-page":"116","DOI":"10.1093\/nar\/gnf115","volume":"30","author":"E. Sterrenburg","year":"2002","unstructured":"Sterrenburg, E., Turk, R., Boer, J.M., van Ommen, G.B., den Dunnen, J.T.: A common reference for cDNA microarray hybridizations. Nucleic Acids Res.\u00a030(21), e116 (2002)","journal-title":"Nucleic Acids Res."},{"issue":"11","key":"49_CR9","doi-asserted-by":"publisher","first-page":"7554","DOI":"10.1073\/pnas.112683499","volume":"99","author":"A.M. Dudley","year":"2002","unstructured":"Dudley, A.M., Aach, J., Steffen, M.A., Church, G.M.: Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range. Proc. Natl. Acad. Sci.\u00a099(11), 7554\u20137559 (2002)","journal-title":"Proc. Natl. Acad. Sci."},{"key":"49_CR10","doi-asserted-by":"crossref","unstructured":"Yang, I.Y., Chen, E., et al.: Within the fold: assessing differential expression measures and reproducibility in microarray assays. Genome Biology\u00a03 (2002), doi:10.1186\/gb-2002-3-11-research0062","DOI":"10.1186\/gb-2002-3-11-research0062"},{"issue":"9","key":"49_CR11","doi-asserted-by":"publisher","first-page":"1151","DOI":"10.1038\/nbt1239","volume":"24","author":"L. Shi","year":"2006","unstructured":"Shi, L., Reid, L.H., Jones, W.D., et al.: The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat. Biotechnol.\u00a024(9), 1151\u20131161 (2006)","journal-title":"Nat. Biotechnol."},{"key":"49_CR12","doi-asserted-by":"crossref","unstructured":"Tsiliki, G., Kaforou, S., Kapsetaki, M., Potamias, G., Kafetzopoulos, D.A.: A computational approach to microarray universal reference sample. In: 8th IEEE International Conference on BioInformatics and BioEngineering, pp. 1\u20137 (2008), doi:10.1109\/BIBE.2008.4696690","DOI":"10.1109\/BIBE.2008.4696690"}],"container-title":["IFIP Advances in Information and Communication Technology","Engineering Applications of Neural Networks"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-23957-1_49.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,5,3]],"date-time":"2021-05-03T12:01:36Z","timestamp":1620043296000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-23957-1_49"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011]]},"ISBN":["9783642239564","9783642239571"],"references-count":12,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-23957-1_49","relation":{},"ISSN":["1868-4238","1861-2288"],"issn-type":[{"type":"print","value":"1868-4238"},{"type":"electronic","value":"1861-2288"}],"subject":[],"published":{"date-parts":[[2011]]}}}