{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,6]],"date-time":"2024-09-06T15:51:22Z","timestamp":1725637882261},"publisher-location":"Berlin, Heidelberg","reference-count":31,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642271564"},{"type":"electronic","value":"9783642271571"}],"license":[{"start":{"date-parts":[[2011,1,1]],"date-time":"2011-01-01T00:00:00Z","timestamp":1293840000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011]]},"DOI":"10.1007\/978-3-642-27157-1_16","type":"book-chapter","created":{"date-parts":[[2011,12,2]],"date-time":"2011-12-02T09:21:04Z","timestamp":1322817664000},"page":"143-150","source":"Crossref","is-referenced-by-count":1,"title":["Method for Protein Active Sites Detection Based on Fuzzy Decision Trees"],"prefix":"10.1007","author":[{"given":"Georgina","family":"Mirceva","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andreja","family":"Naumoski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Viktorija","family":"Stojkovik","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Damjan","family":"Temelkovski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Danco","family":"Davcev","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"4","key":"16_CR1","doi-asserted-by":"publisher","first-page":"1113","DOI":"10.1006\/jmbi.2001.4513","volume":"307","author":"A.E. Todd","year":"2001","unstructured":"Todd, A.E., Orengo, C.A., Thornton, J.M.: Evolution of function in protein superfamilies, from a structural perspective. J. Mol. Biol.\u00a0307(4), 1113\u20131143 (2001)","journal-title":"J. Mol. Biol."},{"issue":"14","key":"16_CR2","doi-asserted-by":"publisher","first-page":"260","DOI":"10.1093\/bioinformatics\/btl221","volume":"22","author":"M. Kirac","year":"2006","unstructured":"Kirac, M., Ozsoyoglul, G., Yang, J.: Annotating proteins by mining protein interaction networks. Bioinformatics\u00a022(14), e260\u2013e270 (2006)","journal-title":"Bioinformatics"},{"key":"16_CR3","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1038\/msb4100129","volume":"3","author":"R. Sharan","year":"2007","unstructured":"Sharan, R., Ulitsky, I., Shamir, R.: Network-based prediction of protein function. Mol. Sys. Bio.\u00a03, 88 (2007)","journal-title":"Mol. Sys. Bio."},{"issue":"4","key":"16_CR4","doi-asserted-by":"publisher","first-page":"884","DOI":"10.1110\/ps.03465504","volume":"13","author":"A.R. Panchenko","year":"2004","unstructured":"Panchenko, A.R., Kondrashov, F., Bryant, S.: Prediction of functional sites by analysis of sequence and structure conservation. Protein Science\u00a013(4), 884\u2013892 (2004)","journal-title":"Protein Science"},{"issue":"3","key":"16_CR5","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1002\/prot.1034","volume":"43","author":"N. Leibowitz","year":"2001","unstructured":"Leibowitz, N., Fligelman, Z.Y., Nussinov, R., Wolfson, H.J.: Automated multiple structure alignment and detection of a common substructure motif. Proteins\u00a043(3), 235\u2013245 (2001)","journal-title":"Proteins"},{"issue":"3","key":"16_CR6","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1093\/bib\/bbp001","volume":"10","author":"N. Tuncbag","year":"2009","unstructured":"Tuncbag, N., Kar, G., Keskin, O., Gursoy, A., Nussinov, R.: A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings in Bioinformatics\u00a010(3), 217\u2013232 (2009)","journal-title":"Briefings in Bioinformatics"},{"issue":"1","key":"16_CR7","doi-asserted-by":"publisher","first-page":"242","DOI":"10.1093\/nar\/29.1.242","volume":"29","author":"G.D. Bader","year":"2001","unstructured":"Bader, G.D., Donaldson, I., Wolting, C., Ouellette, B.F., Pawson, T., Hogue, C.W.: BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res.\u00a029(1), 242\u2013245 (2001)","journal-title":"Nucleic Acids Res."},{"issue":"2","key":"16_CR8","doi-asserted-by":"publisher","first-page":"351","DOI":"10.1016\/0022-2836(73)90011-9","volume":"79","author":"A. Shrake","year":"1973","unstructured":"Shrake, A., Rupley, J.A.: Environment and exposure to solvent of protein atoms. Lysozyme and insulin. J. Mol. Biol.\u00a079(2), 351\u2013371 (1973)","journal-title":"Lysozyme and insulin. J. Mol. Biol."},{"issue":"2","key":"16_CR9","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1093\/bioinformatics\/19.2.313","volume":"19","author":"A. Pintar","year":"2003","unstructured":"Pintar, A., Carugo, O., Pongor, S.: DPX: for the analysis of the protein core. Bioinformatics\u00a019(2), 313\u2013314 (2003)","journal-title":"Bioinformatics"},{"issue":"7","key":"16_CR10","doi-asserted-by":"publisher","first-page":"980","DOI":"10.1093\/bioinformatics\/18.7.980","volume":"18","author":"A. Pintar","year":"2002","unstructured":"Pintar, A., Carugo, O., Pongor, S.: CX, an algorithm that identifies protruding atoms in proteins. Bioinformatics\u00a018(7), 980\u2013984 (2002)","journal-title":"Bioinformatics"},{"issue":"1","key":"16_CR11","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1016\/0022-2836(82)90515-0","volume":"157","author":"J. Kyte","year":"1982","unstructured":"Kyte, J., Doolittle, R.F.: A simple method for displaying the hydropathic character of a protein. J. Mol. Biol.\u00a0157(1), 105\u2013132 (1982)","journal-title":"J. Mol. Biol."},{"issue":"1","key":"16_CR12","doi-asserted-by":"publisher","first-page":"121","DOI":"10.1006\/jmbi.1997.1234","volume":"272","author":"S. Jones","year":"1997","unstructured":"Jones, S., Thornton, J.M.: Analysis of protein-protein interaction sites using surface patches. J. Mol Biol.\u00a0272(1), 121\u2013132 (1997)","journal-title":"J. Mol Biol."},{"issue":"2","key":"16_CR13","doi-asserted-by":"publisher","first-page":"2850","DOI":"10.1093\/bioinformatics\/bti443","volume":"21","author":"A.S. Aytuna","year":"2005","unstructured":"Aytuna, A.S., Gursoy, A., Keskin, O.: Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. Bioinformatics\u00a021(2), 2850\u20132855 (2005)","journal-title":"Bioinformatics"},{"issue":"4","key":"16_CR14","doi-asserted-by":"publisher","first-page":"946","DOI":"10.1006\/jmbi.1993.1648","volume":"234","author":"M.C. Lawrence","year":"1993","unstructured":"Lawrence, M.C., Colman, P.M.: Shape complementarity at protein\/protein interfaces. J. Mol. Biol.\u00a0234(4), 946\u2013950 (1993)","journal-title":"J. Mol. Biol."},{"issue":"1","key":"16_CR15","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1016\/j.jmb.2004.02.040","volume":"338","author":"H. Neuvirth","year":"2004","unstructured":"Neuvirth, H., Raz, R., Schreiber, G.: ProMate: a structure based prediction program to identify the location of protein-protein binding sites. J. Mol. Biol.\u00a0338(1), 181\u2013199 (2004)","journal-title":"J. Mol. Biol."},{"issue":"8","key":"16_CR16","doi-asserted-by":"publisher","first-page":"1487","DOI":"10.1093\/bioinformatics\/bti242","volume":"21","author":"J.R. Bradford","year":"2005","unstructured":"Bradford, J.R., Westhead, D.R.: Improved prediction of protein-protein binding sites using a support vector machines approach. Bioinformatics\u00a021(8), 1487\u20131494 (2005)","journal-title":"Bioinformatics"},{"issue":"14","key":"16_CR17","doi-asserted-by":"publisher","first-page":"1794","DOI":"10.1093\/bioinformatics\/btl171","volume":"22","author":"Y. Murakami","year":"2006","unstructured":"Murakami, Y., Jones, S.: SHARP2: protein-protein interaction predictions using patch analysis. Bioinformatics\u00a022(14), 1794\u20131795 (2006)","journal-title":"Bioinformatics"},{"issue":"2","key":"16_CR18","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1093\/nar\/gki585","volume":"33","author":"U. Ogmen","year":"2005","unstructured":"Ogmen, U., Keskin, O., Aytuna, A.S., Nussinov, R., Gursoy, A.: PRISM: protein interactions by structural matching. Nucleic. Acids. Res.\u00a033(2), W331\u2013W336 (2005)","journal-title":"Nucleic. Acids. Res."},{"issue":"1","key":"16_CR19","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1006\/jmbi.1997.1233","volume":"272","author":"S. Jones","year":"1997","unstructured":"Jones, S., Thornton, J.M.: Prediction of protein-protein interaction sites using patch analysis. J. Mol. Biol.\u00a0272(1), 133\u2013143 (1997)","journal-title":"J. Mol. Biol."},{"issue":"1","key":"16_CR20","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1109\/3477.658573","volume":"28","author":"C.Z. Janikow","year":"1998","unstructured":"Janikow, C.Z.: Fuzzy decision trees: issues and methods. IEEE Transactions on Systems, Man, and Cybernetics\u00a028(1), 1\u201314 (1998)","journal-title":"IEEE Transactions on Systems, Man, and Cybernetics"},{"issue":"6","key":"16_CR21","doi-asserted-by":"publisher","first-page":"1414","DOI":"10.1109\/21.199466","volume":"22","author":"L.X. Wang","year":"1992","unstructured":"Wang, L.X., Mendel, J.M.: Generating fuzzy rules by learning from examples. IEEE Transactions on Systems, Man, and Cybernetics\u00a022(6), 1414\u20131427 (1992)","journal-title":"IEEE Transactions on Systems, Man, and Cybernetics"},{"issue":"2","key":"16_CR22","doi-asserted-by":"publisher","first-page":"339","DOI":"10.1109\/21.52545","volume":"20","author":"R.J. Quinlan","year":"1990","unstructured":"Quinlan, R.J.: Decision trees and decision making. IEEE Transactions on Systems, Man, and Cybernetics\u00a020(2), 339\u2013346 (1990)","journal-title":"IEEE Transactions on Systems, Man, and Cybernetics"},{"issue":"2","key":"16_CR23","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1016\/S0165-0114(03)00089-7","volume":"138","author":"C. Olaru","year":"2003","unstructured":"Olaru, C., Wehenkel, L.: A complete fuzzy decision tree technique. Fuzzy Sets and Systems\u00a0138(2), 221\u2013254 (2003)","journal-title":"Fuzzy Sets and Systems"},{"issue":"12","key":"16_CR24","doi-asserted-by":"publisher","first-page":"1297","DOI":"10.1109\/34.817409","volume":"21","author":"A. Su\u00e1rez","year":"1999","unstructured":"Su\u00e1rez, A., Lutsko, J.F.: Globally optimal fuzzy decision trees for classification and regression. IEEE Transactions on Pattern Analysis and Machine Intelligence\u00a021(12), 1297\u20131311 (1999)","journal-title":"IEEE Transactions on Pattern Analysis and Machine Intelligence"},{"issue":"1","key":"16_CR25","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1016\/S0165-0114(97)00386-2","volume":"112","author":"X. Wang","year":"2000","unstructured":"Wang, X., Chen, B., Olan, G., Ye, F.: On the optimization of fuzzy decision trees. Fuzzy Sets and Systems\u00a0112(1), 117\u2013125 (2000)","journal-title":"Fuzzy Sets and Systems"},{"issue":"2","key":"16_CR26","doi-asserted-by":"publisher","first-page":"149","DOI":"10.1007\/s12543-009-0012-2","volume":"1","author":"Y.-L. Chen","year":"2009","unstructured":"Chen, Y.-L., Wang, T., Wang, B.-S., Li, Z.-J.: A Survey of Fuzzy Decision Tree Classifier. Fuzzy Information and Engineering\u00a01(2), 149\u2013159 (2009)","journal-title":"Fuzzy Information and Engineering"},{"issue":"3","key":"16_CR27","doi-asserted-by":"publisher","first-page":"379","DOI":"10.1016\/0022-2836(71)90324-X","volume":"55","author":"B. Lee","year":"1971","unstructured":"Lee, B., Richards, F.M.: The interpretation of protein structures: Estimation of static accessibility. J. Mol. Biol.\u00a055(3), 379\u2013400 (1971)","journal-title":"J. Mol. Biol."},{"issue":"1","key":"16_CR28","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/0022-2836(76)90191-1","volume":"105","author":"C. Chothia","year":"1976","unstructured":"Chothia, C.: The Nature of the Accessible and Buried Surfaces in Proteins. J. Mol. Biol.\u00a0105(1), 1\u201312 (1976)","journal-title":"J. Mol. Biol."},{"key":"16_CR29","unstructured":"Klir, G.J., Yuan, B.: Fuzzy sets and fuzzy logic: theory and applications, 1st edn. Prentice-Hall (1995)"},{"key":"16_CR30","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1093\/nar\/gkh034","volume":"32","author":"J.-M. Chandonia","year":"2004","unstructured":"Chandonia, J.-M., Hon, G., Walker, N.S., Conte, L.L., Koehl, P., Levitt, M., Brenner, S.E.: The ASTRAL Compendium in 2004. Nucleic Acids Res.\u00a032, D189\u2013D192 (2004)","journal-title":"Nucleic Acids Res."},{"key":"16_CR31","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1093\/nar\/gkp916","volume":"38","author":"S. Velankar","year":"2010","unstructured":"Velankar, S., Best, C., Beuth, B., Boutselakis, C.H., Cobley, N., Sousa Da Silva, A.W., Dimitropoulos, D., Golovin, A., Hirshberg, M., John, M., Krissinel, E.B., Newman, R., Oldfield, T., Pajon, A., Penkett, C.J., Pineda-Castillo, J., Sahni, G., Sen, S., Slowley, R., Suarez-Uruena, A., Swaminathan, J., Van Ginkel, G., Vranken, W.F., Henrick, K., Kleywegt, G.J.: PDBe: Protein Data Bank in Europe. Nucleic Acids Research\u00a038, D308\u2013D317 (2010)","journal-title":"Nucleic Acids Research"}],"container-title":["Communications in Computer and Information Science","Database Theory and Application, Bio-Science and Bio-Technology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-27157-1_16","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,6,28]],"date-time":"2020-06-28T04:02:24Z","timestamp":1593316944000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-27157-1_16"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011]]},"ISBN":["9783642271564","9783642271571"],"references-count":31,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-27157-1_16","relation":{},"ISSN":["1865-0929","1865-0937"],"issn-type":[{"type":"print","value":"1865-0929"},{"type":"electronic","value":"1865-0937"}],"subject":[],"published":{"date-parts":[[2011]]}}}