{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,6]],"date-time":"2024-09-06T22:06:19Z","timestamp":1725660379646},"publisher-location":"Berlin, Heidelberg","reference-count":24,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642281440"},{"type":"electronic","value":"9783642281457"}],"license":[{"start":{"date-parts":[[2012,1,1]],"date-time":"2012-01-01T00:00:00Z","timestamp":1325376000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012]]},"DOI":"10.1007\/978-3-642-28145-7_7","type":"book-chapter","created":{"date-parts":[[2012,2,15]],"date-time":"2012-02-15T19:58:14Z","timestamp":1329335894000},"page":"67-77","source":"Crossref","is-referenced-by-count":0,"title":["High Performance Computing Techniques for Scaling Image Analysis Workflows"],"prefix":"10.1007","author":[{"given":"Patrick M.","family":"Widener","sequence":"first","affiliation":[]},{"given":"Tahsin","family":"Kurc","sequence":"additional","affiliation":[]},{"given":"Wenjin","family":"Chen","sequence":"additional","affiliation":[]},{"given":"Fusheng","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Lin","family":"Yang","sequence":"additional","affiliation":[]},{"given":"Jun","family":"Hu","sequence":"additional","affiliation":[]},{"given":"Vijay","family":"Kumar","sequence":"additional","affiliation":[]},{"given":"Vicky","family":"Chu","sequence":"additional","affiliation":[]},{"given":"Lee","family":"Cooper","sequence":"additional","affiliation":[]},{"given":"Jun","family":"Kong","sequence":"additional","affiliation":[]},{"given":"Ashish","family":"Sharma","sequence":"additional","affiliation":[]},{"given":"Tony","family":"Pan","sequence":"additional","affiliation":[]},{"given":"Joel H.","family":"Saltz","sequence":"additional","affiliation":[]},{"given":"David J.","family":"Foran","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"1","key":"7_CR1","first-page":"24","volume":"7","author":"D.L. Rimm","year":"2001","unstructured":"Rimm, D.L., Camp, R.L., Charette, L.A., Costa, J., Olsen, D.A., Reiss, M.: Tissue microarray: A new technology for amplification of tissue resources. Cancer Journal\u00a07(1), 24\u201331 (2001)","journal-title":"Cancer Journal"},{"key":"7_CR2","unstructured":"Zhang, X., Pan, T., Catalyurek, U., Kurc, T., Saltz, J.: Serving Queries to Multi-Resolution Datasets on Disk-based Storage Clusters. In: The Proceedings of 4th IEEE\/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), Chicago, IL (April 2004)"},{"issue":"2","key":"7_CR3","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1109\/TITB.2007.908466","volume":"12","author":"V.S. Kumar","year":"2008","unstructured":"Kumar, V.S., Rutt, B., Kurc, T.M., Catalyurek, U.V., Pan, T.C., Chow, S., Lamont, S., Martone, M., Saltz, J.H.: Large-scale biomedical image analysis in grid environments. IEEE Transactions on Information Technology in Biomedicine\u00a012(2), 154\u2013161 (2008)","journal-title":"IEEE Transactions on Information Technology in Biomedicine"},{"key":"7_CR4","doi-asserted-by":"crossref","unstructured":"Kumar, V., Kurc, T., Ratnakar, V., Kim, J., Mehta, G., Vahi, K., Nelson, Y., Sadayappan, P., Deelman, E., Gil, Y., Hall, M., Saltz, J.: Parameterized specification, configuration and execution of data-intensive scientific workflows. Cluster Computing (April 2010)","DOI":"10.1007\/s10586-010-0133-8"},{"issue":"5","key":"7_CR5","doi-asserted-by":"publisher","first-page":"827","DOI":"10.1016\/S0167-8191(02)00097-2","volume":"28","author":"M. Beynon","year":"2002","unstructured":"Beynon, M., Chang, C., Catalyurek, U., Kurc, T., Sussman, A., Andrade, H., Ferreira, R., Saltz, J.: Processing large-scale multi-dimensional data in parallel and distributed environments. Parallel Comput.\u00a028(5), 827\u2013859 (2002)","journal-title":"Parallel Comput."},{"key":"7_CR6","doi-asserted-by":"crossref","unstructured":"Kumar, V., Kurc, T., Saltz, J., Abdulla, G., Kohn, S., Matarazzo, C.: Architectural Implications for Spatial Object Association Algorithms. In: The 23rd IEEE International Parallel and Distributed Processing Symposium (IPDPS 2009), Rome, Italy (May 2009)","DOI":"10.1109\/IPDPS.2009.5161078"},{"key":"7_CR7","unstructured":"Gray, J., Nieto-Santisteban, M.A., Szalay, A.S.: The zones algorithm for finding points-near-a point or cross-matching spatial datasets. CoRR, abs\/cs\/0701171 (2007)"},{"key":"7_CR8","doi-asserted-by":"crossref","unstructured":"Kurc, T., Hastings, S., Kumar, S., et al.: HPC and Grid Computing for Integrative Biomedical Research. International Journal of High Performance Computing Applications, Special Issue of the Workshop on Clusters and Computational Grids for Scientific Computing (August 2009)","DOI":"10.1177\/1094342009106192"},{"key":"7_CR9","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1197\/jamia.M2522","volume":"15","author":"S. Oster","year":"2008","unstructured":"Oster, S., Langella, S., Hastings, S., Ervin, D., Madduri, R., Phillips, J., Kurc, T., Siebenlist, F., Covitz, P., Shanbhag, K., Foster, I., Saltz, J.: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research. Journal of the American Medical Informatics Association (JAMIA)\u00a015, 138\u2013149 (2008)","journal-title":"Journal of the American Medical Informatics Association (JAMIA)"},{"issue":"4","key":"7_CR10","doi-asserted-by":"publisher","first-page":"477","DOI":"10.1016\/S0046-8177(99)90126-0","volume":"30","author":"C.L. Felten","year":"1999","unstructured":"Felten, C.L., Strauss, J.S., Okada, D.H., Marchevsky, A.: Virtual microscopy: high resolution digital photomicrography as a tool for light microscopy simulation. Hum. Pathol.\u00a030(4), 477\u2013483 (1999)","journal-title":"Hum. Pathol."},{"issue":"6","key":"7_CR11","doi-asserted-by":"publisher","first-page":"792","DOI":"10.1093\/ajcp\/111.6.792","volume":"111","author":"R.P. Singson","year":"1999","unstructured":"Singson, R.P., Natarajan, S., Greenson, J.K., Marchevsky, A.: Virtual microscopy and the Internet as telepathology consultation tools. A study of gastrointestinal biopsy specimens. Am J. Clin. Pathol.\u00a0111(6), 792\u2013795 (1999)","journal-title":"Am J. Clin. Pathol."},{"issue":"5-6","key":"7_CR12","doi-asserted-by":"publisher","first-page":"459","DOI":"10.1155\/2007\/959376","volume":"23","author":"N.C. Ramirez","year":"2007","unstructured":"Ramirez, N.C., Barr, T.J., Billiter, D.M.: Utilizing virtual microscopy for quality control review. Dis Markers\u00a023(5-6), 459\u2013466 (2007)","journal-title":"Dis Markers"},{"issue":"6","key":"7_CR13","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1097\/00000372-199912000-00004","volume":"21","author":"D.H. Okada","year":"1999","unstructured":"Okada, D.H., Binder, S.W., Felten, C.L., Strauss, J.S., Marchevsky, A.M.: Virtual microscopy and the internet as telepathology consultation tools: Diagnostic accuracy in evaluating melanocytic skin lesions. Am J. Dermatopatholology\u00a021(6), 525\u2013531 (1999)","journal-title":"Am J. Dermatopatholology"},{"key":"7_CR14","unstructured":"Afework, A., Beynon, M., Bustamante, F., et al.: Digital dynamic telepathology - the Virtual Microscope. In: The AMIA Annual Fall Symposium. American Medical Informatics Association (November 1998)"},{"key":"7_CR15","doi-asserted-by":"crossref","unstructured":"Goldberg, I., Allan, C., Burel, J.M., et al.: The open microscopy environment (OME) data model and xml file: Open tools for informatics and quantitative analysis in biological imaging. Genome Biol. 6(R47) (2005)","DOI":"10.1186\/gb-2005-6-5-r47"},{"issue":"3","key":"7_CR16","doi-asserted-by":"publisher","first-page":"220","DOI":"10.1016\/j.jsb.2007.10.003","volume":"161","author":"M. Martone","year":"2008","unstructured":"Martone, M., Tran, J., Wong, W., Sargis, J., Fong, L., Larson, S., Lamont, S., Gupta, A., Ellisman, M.: The cell centered database project: An update on building community resources for managing and sharing 3d imaging data. Journal of Structural Biology\u00a0161(3), 220\u2013231 (2008)","journal-title":"Journal of Structural Biology"},{"key":"7_CR17","unstructured":"Manolakos, E., Funk, A.: Rapid prototyping of component-based distributed image processing applications using JavaPorts. In: Workshop on Computer-Aided Medical Image Analysis, CenSSIS Research and Industrial Collaboration Conference (2002)"},{"key":"7_CR18","unstructured":"Oberhuber, M.: Distributed high-performance image processing on the internet, MS Thesis, Technische Universitat Graz (2002)"},{"issue":"10","key":"7_CR19","doi-asserted-by":"publisher","first-page":"1039","DOI":"10.1002\/cpe.994","volume":"18","author":"B. Ludascher","year":"2006","unstructured":"Ludascher, B., Altintas, I., et al.: Scientific workflow management and the kepler system. Research articles. Concurr. Comput.: Pract. Exper.\u00a018(10), 1039\u20131065 (2006)","journal-title":"Concurr. Comput.: Pract. Exper."},{"key":"7_CR20","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1007\/978-3-540-28642-4_2","volume-title":"Grid Computing","author":"E. Deelman","year":"2004","unstructured":"Deelman, E., Blythe, J., Gil, Y., Kesselman, C., Mehta, G., Patil, S., Su, M.-H., Vahi, K., Livny, M.: Pegasus: Mapping Scientific Workflows onto the Grid. In: Dikaiakos, M.D. (ed.) AxGrids 2004. LNCS, vol.\u00a03165, pp. 11\u201320. Springer, Heidelberg (2004)"},{"key":"7_CR21","unstructured":"Glatard, T., Montagnat, J., Pennec, X.: Efficient services composition for grid-enabled data-intensive applications. In: Proceedings of the IEEE International Symposium on High Performance Distributed Computing (HPDC 2006), Paris, France, June 19 (2006)"},{"key":"7_CR22","doi-asserted-by":"crossref","unstructured":"Andrade, H., Gedik, B., Wu, K., Yu, P.: Scale-Up Strategies for Processing High-Rate Data Streams in System S. In: The 25th International Conference on Data Engineering (ICDE 2009), Shangai, China, pp. 1375\u20131378 (2009)","DOI":"10.1109\/ICDE.2009.116"},{"key":"7_CR23","unstructured":"Cudre-Mauroux, P., Lim, H., Simakov, J., et al.: A Demonstration of SciDB: A Science-Oriented DBMS. In: 35th International Conference on Very Large Data Bases (VLDB 2009), Lyon, France (2009)"},{"key":"7_CR24","unstructured":"Dean, J., Ghemawat, S.: MapReduce: Simplified Data Processing on Large Clusters. In: 6th Symposium on Operating Systems Design and Implementation (OSDI 2004), San Francisco, CA (2004)"}],"container-title":["Lecture Notes in Computer Science","Applied Parallel and Scientific Computing"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-28145-7_7","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,7,2]],"date-time":"2020-07-02T13:43:28Z","timestamp":1593697408000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-28145-7_7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012]]},"ISBN":["9783642281440","9783642281457"],"references-count":24,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-28145-7_7","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2012]]}}}