{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T20:43:06Z","timestamp":1743108186165,"version":"3.40.3"},"publisher-location":"Berlin, Heidelberg","reference-count":16,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642288388"},{"type":"electronic","value":"9783642288395"}],"license":[{"start":{"date-parts":[[2012,1,1]],"date-time":"2012-01-01T00:00:00Z","timestamp":1325376000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2012,1,1]],"date-time":"2012-01-01T00:00:00Z","timestamp":1325376000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012]]},"DOI":"10.1007\/978-3-642-28839-5_31","type":"book-chapter","created":{"date-parts":[[2012,3,5]],"date-time":"2012-03-05T22:33:40Z","timestamp":1330986820000},"page":"269-276","source":"Crossref","is-referenced-by-count":0,"title":["Tackling Misleading Peptide Regulation Fold Changes in Quantitative Proteomics"],"prefix":"10.1007","author":[{"given":"Christoph","family":"Gernert","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Evelin","family":"Berger","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Frank","family":"Klawonn","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lothar","family":"J\u00e4nsch","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"31_CR1","doi-asserted-by":"crossref","unstructured":"Adachi, J., Kumar, C., Zhang, Y., Olsen, J.V., Mann, M.: The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol.\u00a07, R80 (2006)","DOI":"10.1186\/gb-2006-7-9-r80"},{"key":"31_CR2","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1186\/1745-6150-3-27","volume":"3","author":"G. Alves","year":"2008","unstructured":"Alves, G., Ogurtsov, A.Y., Kwok, S., Wu, W.W., Wang, G., Shen, R.F., Yu, Y.K.: Detection of co-eluted peptides using database search methods. Biol. Direct\u00a03, 27 (2008)","journal-title":"Biol. Direct"},{"key":"31_CR3","doi-asserted-by":"crossref","unstructured":"Bodenmiller, B., Aebersold, R.: Quantitative Analysis of Protein Phosphorylation on a System-Wide Scale by Mass Spectrometry-Based Proteomics, vol.\u00a0470, pp. 317\u2013334. Elsevier (2010)","DOI":"10.1016\/S0076-6879(10)70013-6"},{"key":"31_CR4","doi-asserted-by":"publisher","first-page":"214","DOI":"10.1186\/1471-2105-8-214","volume":"8","author":"A.M. Boehm","year":"2007","unstructured":"Boehm, A.M., P\u00fctz, S., Altenh\u00f6fer, D., Sickmann, A., Falk, M.: Precise protein quantification based on peptide quantification using iTRAQ. BMC Bioinformatics\u00a08, 214 (2007)","journal-title":"BMC Bioinformatics"},{"key":"31_CR5","doi-asserted-by":"crossref","unstructured":"de Godoy, L., Olsen, J., de Souza, G., Li, G., Mortensen, P., Mann, M.: Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biology\u00a07(6), R50 (2006)","DOI":"10.1186\/gb-2006-7-6-r50"},{"key":"31_CR6","doi-asserted-by":"crossref","unstructured":"Grosse-Coosmann, F., Boehm, A.M., Sickmann, A.: Efficient analysis and extraction of MS\/MS result data from mascot result files. BMC bioinformatics\u00a06 (2005)","DOI":"10.1186\/1471-2105-6-290"},{"key":"31_CR7","doi-asserted-by":"publisher","first-page":"3659","DOI":"10.1093\/nar\/gki671","volume":"33","author":"X. Guo","year":"2005","unstructured":"Guo, X., Bruist, M.F., Davis, D.L., Bentzley, C.M.: Secondary structural characterization of oligonucleotide strands using electrospray ionization mass spectrometry. Nucleic Acids Res.\u00a033, 3659\u20133666 (2005)","journal-title":"Nucleic Acids Res."},{"key":"31_CR8","doi-asserted-by":"publisher","first-page":"1004","DOI":"10.1093\/bioinformatics\/btn551","volume":"25","author":"C. Hundertmark","year":"2009","unstructured":"Hundertmark, C., Fischer, R., Reinl, T., May, S., Klawonn, F., J\u00e4nsch, L.: Ms-specific noise model reveals the potential of itraq in quantitative proteomics. Bioinformatics\u00a025, 1004\u20131011 (2009)","journal-title":"Bioinformatics"},{"key":"31_CR9","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1186\/1471-2105-8-323","volume":"8","author":"X. Jiang","year":"2007","unstructured":"Jiang, X., Jiang, X., Han, G., Ye, M., Zou, H.: Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics. BMC Bioinformatics\u00a08, 323 (2007)","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"31_CR10","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1186\/1477-5956-5-3","volume":"5","author":"J. Liu","year":"2007","unstructured":"Liu, J., Bell, A.W., Bergeron, J.J., Yanofsky, C.M., Carrillo, B., Beaudrie, C.E., Kearney, R.E.: Methods for peptide identification by spectral comparison. Proteome Science\u00a05(1), 3 (2007)","journal-title":"Proteome Science"},{"issue":"7","key":"31_CR11","doi-asserted-by":"publisher","first-page":"2696","DOI":"10.1371\/journal.pone.0002696","volume":"3","author":"A. Milano","year":"2008","unstructured":"Milano, A., Pendergrass, S.A., Sargent, J.L., George, L.K., McCalmont, T.H., Connolly, M.K., Whitfield, M.L.: Molecular subsets in the gene expression signatures of scleroderma skin. PLoS ONE\u00a03(7), e2696 (2008)","journal-title":"PLoS ONE"},{"key":"31_CR12","doi-asserted-by":"publisher","first-page":"2778","DOI":"10.1074\/mcp.M800521-MCP200","volume":"8","author":"T. Reinl","year":"2009","unstructured":"Reinl, T., Nimtz, M., Hundertmark, C., Johl, T., K\u00e9ri, G., Wehland, J., Daub, H., J\u00e4nsch, L.: Quantitative phosphokinome analysis of the met pathway activated by the invasin internalin b from listeria monocytogenes. Mol. Cell Proteomics\u00a08, 2778\u20132795 (2009)","journal-title":"Mol. Cell Proteomics"},{"key":"31_CR13","doi-asserted-by":"publisher","first-page":"1967","DOI":"10.1007\/s00216-007-1584-5","volume":"389","author":"E.C. Stigter","year":"2007","unstructured":"Stigter, E.C., de Jong, G.J., van Bennekom, W.P.: Development of an open-tubular trypsin reactor for on-line digestion of proteins. Anal. Bioanal. Chem.\u00a0389, 1967\u20131977 (2007)","journal-title":"Anal. Bioanal. Chem."},{"key":"31_CR14","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1186\/ar2274","volume":"9","author":"M.L. Tiku","year":"2007","unstructured":"Tiku, M.L., Narla, H., Jain, M., Yalamanchili, P.: Glucosamine prevents in vitro collagen degradation in chondrocytes by inhibiting advanced lipoxidation reactions and protein oxidation. Arthritis Res. Ther.\u00a09, R76 (2007)","journal-title":"Arthritis Res. Ther."},{"issue":"10","key":"31_CR15","doi-asserted-by":"publisher","first-page":"1630","DOI":"10.1038\/nprot.2008.150","volume":"3","author":"J. Vill\u00e9n","year":"2008","unstructured":"Vill\u00e9n, J., Gygi, S.P.: The SCX\/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry. Nature Protocols\u00a03(10), 1630\u20131638 (2008)","journal-title":"Nature Protocols"},{"key":"31_CR16","doi-asserted-by":"crossref","unstructured":"Webb-Robertson, B.J.M., Matzke, M.M., Jacobs, J.M., Pounds, J.G., Waters, K.M.: A statistical selection strategy for normalization procedures in lc-ms proteomics experiments through dataset-dependent ranking of normalization scaling factors. PROTEOMICS (2011)","DOI":"10.1002\/pmic.201100078"}],"container-title":["Advances in Intelligent and Soft Computing","6th International Conference on Practical Applications of Computational Biology &amp; Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-28839-5_31","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,19]],"date-time":"2023-02-19T00:30:19Z","timestamp":1676766619000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-642-28839-5_31"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012]]},"ISBN":["9783642288388","9783642288395"],"references-count":16,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-28839-5_31","relation":{},"ISSN":["1867-5662","1867-5670"],"issn-type":[{"type":"print","value":"1867-5662"},{"type":"electronic","value":"1867-5670"}],"subject":[],"published":{"date-parts":[[2012]]}}}