{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,9]],"date-time":"2024-09-09T14:13:42Z","timestamp":1725891222508},"publisher-location":"Berlin, Heidelberg","reference-count":20,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642314995"},{"type":"electronic","value":"9783642315008"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012]]},"DOI":"10.1007\/978-3-642-31500-8_29","type":"book-chapter","created":{"date-parts":[[2012,7,3]],"date-time":"2012-07-03T15:09:08Z","timestamp":1341328148000},"page":"281-291","source":"Crossref","is-referenced-by-count":5,"title":["Parallel Software Architecture for Experimental Workflows in Computational Biology on Clouds"],"prefix":"10.1007","author":[{"given":"Luqman","family":"Hodgkinson","sequence":"first","affiliation":[]},{"given":"Javier","family":"Rosa","sequence":"additional","affiliation":[]},{"given":"Eric A.","family":"Brewer","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"5","key":"29_CR1","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1186\/gb-2010-11-5-207","volume":"11","author":"L.D. Stein","year":"2010","unstructured":"Stein, L.D.: The case for cloud computing in genome informatics. Genome Biology\u00a011(5), 207 (2010)","journal-title":"Genome Biology"},{"issue":"3","key":"29_CR2","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1109\/MC.2011.63","volume":"44","author":"Y.A. Khalidi","year":"2011","unstructured":"Khalidi, Y.A.: Building a cloud computing platform for new possibilities. Computer\u00a044(3), 29\u201334 (2011)","journal-title":"Computer"},{"issue":"12","key":"29_CR3","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1109\/MC.2007.421","volume":"40","author":"Y. Gil","year":"2007","unstructured":"Gil, Y., Deelman, E., Ellisman, M., Fahringer, T., Fox, G., et al.: Examining the challenges of scientific workflows. Computer\u00a040(12), 24\u201332 (2007)","journal-title":"Computer"},{"issue":"2","key":"29_CR4","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1145\/204362.204514","volume":"29","author":"H.D. Lord","year":"1995","unstructured":"Lord, H.D.: Improving the application development process with modular visualization environments. Computer Graphics\u00a029(2), 10\u201312 (1995)","journal-title":"Computer Graphics"},{"issue":"3","key":"29_CR5","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1145\/354871.354874","volume":"18","author":"E. Kohler","year":"2000","unstructured":"Kohler, E., Morris, R., Chen, B., Jannotti, J., Kaashoek, F.: The Click modular router. ACM Trans. on Computer Systems\u00a018(3), 263\u2013297 (2000)","journal-title":"ACM Trans. on Computer Systems"},{"key":"29_CR6","doi-asserted-by":"crossref","unstructured":"Welsh, M., Culler, D., Brewer, E.: SEDA: an architecture for well-conditioned, scalable internet services. In: Proc. of the 18th Symposium on Operating Systems Principles, SOSP 2001 (2001)","DOI":"10.1145\/502034.502057"},{"key":"29_CR7","unstructured":"Armbrust, M., Fox, A., Griffith, R., Joseph, A.D., Katz, R.H., et al.: Above the clouds: a Berkeley view of cloud computing. EECS Department, University of California, Berkeley UCB\/EECS-2009-28 (2009)"},{"volume-title":"Workflows for e-Science: Scientific Workflows for Grids","year":"2006","key":"29_CR8","unstructured":"Taylor, I.J., Deelman, E., Gannon, D.B., Shields, M. (eds.): Workflows for e-Science: Scientific Workflows for Grids. Springer, Heidelberg (2006)"},{"key":"29_CR9","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1155\/2005\/128026","volume":"13","author":"E. Deelman","year":"2005","unstructured":"Deelman, E., Singh, G., Su, M., Blythe, J., Gil, Y.: Pegasus: a framework for mapping complex scientific workflows onto distributed systems. Scientific Programming\u00a013, 219\u2013237 (2005)","journal-title":"Scientific Programming"},{"key":"29_CR10","first-page":"71","volume-title":"Grids, Clouds and Virtualization","author":"G. Juve","year":"2010","unstructured":"Juve, G., Deelman, E.: Scientific workflows in the cloud. In: Cafaro, M., Aloisio, G. (eds.) Grids, Clouds and Virtualization, pp. 71\u201391. Springer, Heidelberg (2010)"},{"key":"29_CR11","doi-asserted-by":"crossref","first-page":"W729","DOI":"10.1093\/nar\/gkl320","volume":"34","author":"D. Hull","year":"2006","unstructured":"Hull, D., Wolstencroft, K., Stevens, R., Goble, C., Pocock, M.R., et al.: Taverna: a tool for building and running workflows of services. Nucleic Acids Research 34(Web Server issue), W729\u2013W732 (2006)","journal-title":"Nucleic Acids Research"},{"key":"29_CR12","doi-asserted-by":"publisher","first-page":"1039","DOI":"10.1002\/cpe.994","volume":"18","author":"B. Lud\u00e4scher","year":"2006","unstructured":"Lud\u00e4scher, B., Altintas, I., Berkley, C., Higgins, D., Jaeger, E., et al.: Scientific workflow management and the Kepler system. Concurrency and Computation: Practice and Experience\u00a018, 1039\u20131065 (2006)","journal-title":"Concurrency and Computation: Practice and Experience"},{"issue":"7","key":"29_CR13","doi-asserted-by":"publisher","first-page":"903","DOI":"10.1093\/bioinformatics\/btr040","volume":"27","author":"B. Linke","year":"2011","unstructured":"Linke, B., Giegerich, R., Goesmann, A.: Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics\u00a027(7), 903\u2013911 (2011)","journal-title":"Bioinformatics"},{"issue":"11","key":"29_CR14","doi-asserted-by":"publisher","first-page":"1181","DOI":"10.1038\/nbt1110-1181","volume":"28","author":"J.T. Dudley","year":"2010","unstructured":"Dudley, J.T., Butte, A.J.: In silico research in the era of cloud computing. Nature Biotechnology\u00a028(11), 1181\u20131185 (2010)","journal-title":"Nature Biotechnology"},{"issue":"1","key":"29_CR15","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1109\/MCSE.2009.15","volume":"11","author":"D.L. Donoho","year":"2009","unstructured":"Donoho, D.L., Maleki, A., Rahman, I.U., Shahram, M., Stodden, V.: Reproducible research in computational harmonic analysis. Computing in Science and Engineering\u00a011(1), 8\u201318 (2009)","journal-title":"Computing in Science and Engineering"},{"issue":"7","key":"29_CR16","doi-asserted-by":"publisher","first-page":"789","DOI":"10.1002\/spe.4380250705","volume":"25","author":"T.J. Parr","year":"1995","unstructured":"Parr, T.J., Quong, R.W.: ANTLR: a predicated-LL(k) parser generator. Software-Practice and Experience\u00a025(7), 789\u2013810 (1995)","journal-title":"Software-Practice and Experience"},{"key":"29_CR17","volume-title":"Systems Biology: A Textbook","author":"E. Klipp","year":"2009","unstructured":"Klipp, E., Liebermeister, W., Wierling, C., Kowald, A., Lehrach, H., Herwig, R.: Systems Biology: A Textbook. Wiley-VCH, Weinheim (2009)"},{"key":"29_CR18","unstructured":"Hodgkinson, L., Karp, R.M.: Algorithms to detect multiprotein modularity conserved during evolution. IEEE\/ACM Trans. on Computational Biology and Bioinformatics (September 27, 2011), IEEE Computer Society Digital Library. IEEE Computer Society, \n                    \n                      http:\/\/doi.ieeecomputersociety.org\/10.1109\/TCBB.2011.125"},{"issue":"1","key":"29_CR19","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1145\/1327452.1327492","volume":"51","author":"J. Dean","year":"2008","unstructured":"Dean, J., Ghemawat, S.: MapReduce: simplified data processing on large clusters. Communications of the ACM\u00a051(1), 107\u2013113 (2008)","journal-title":"Communications of the ACM"},{"key":"29_CR20","unstructured":"Bialecki, A., Cafarella, M., Cutting, D., OMalley, O.: Hadoop: a framework for running applications on large clusters built of commodity hardware, Wiki at, \n                    \n                      http:\/\/lucene.apache.org\/hadoop"}],"container-title":["Lecture Notes in Computer Science","Parallel Processing and Applied Mathematics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-31500-8_29.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,5,4]],"date-time":"2021-05-04T12:04:27Z","timestamp":1620129867000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-31500-8_29"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012]]},"ISBN":["9783642314995","9783642315008"],"references-count":20,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-31500-8_29","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2012]]}}}