{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,9]],"date-time":"2024-09-09T14:09:16Z","timestamp":1725890956875},"publisher-location":"Berlin, Heidelberg","reference-count":22,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642319266"},{"type":"electronic","value":"9783642319273"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012]]},"DOI":"10.1007\/978-3-642-31927-3_12","type":"book-chapter","created":{"date-parts":[[2012,8,10]],"date-time":"2012-08-10T11:35:13Z","timestamp":1344598513000},"page":"132-143","source":"Crossref","is-referenced-by-count":0,"title":["Associating Genotype Sequence Properties to Haplotype Inference Errors"],"prefix":"10.1007","author":[{"given":"Rog\u00e9rio S.","family":"Rosa","sequence":"first","affiliation":[]},{"given":"Rafael H. S.","family":"Santos","sequence":"additional","affiliation":[]},{"given":"Katia S.","family":"Guimar\u00e3es","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"12_CR1","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1109\/TCBB.2006.24","volume":"3","author":"D. Brown","year":"2006","unstructured":"Brown, D., Harrower, I.: Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions. IEEE\/ACM Trans. Comput. Biol. Bioinform.\u00a03, 141\u2013154 (2006)","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinform."},{"key":"12_CR2","first-page":"111","volume":"7","author":"A. Clark","year":"1990","unstructured":"Clark, A.: Inference of haplotypes from pcr amplified samples of diploid populations. Journal of Molecular Biology and Evolution\u00a07, 111\u2013122 (1990)","journal-title":"Journal of Molecular Biology and Evolution"},{"key":"12_CR3","doi-asserted-by":"publisher","first-page":"789","DOI":"10.1038\/nature02168","volume":"426","author":"T.I.H. Consortium","year":"2003","unstructured":"Consortium, T.I.H.: The international hapmap consortium. Nature\u00a0426, 789\u2013796 (2003)","journal-title":"Nature"},{"key":"12_CR4","series-title":"LNBI","doi-asserted-by":"publisher","first-page":"585","DOI":"10.1007\/11415770_44","volume-title":"Research in Computational Molecular Biology","author":"Z. Ding","year":"2005","unstructured":"Ding, Z., Filkov, V., Gusfield, D.: A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem. In: Miyano, S., Mesirov, J., Kasif, S., Istrail, S., Pevzner, P.A., Waterman, M. (eds.) RECOMB 2005. LNCS (LNBI), vol.\u00a03500, pp. 585\u2013600. Springer, Heidelberg (2005)"},{"key":"12_CR5","doi-asserted-by":"publisher","first-page":"542","DOI":"10.1186\/1471-2105-7-542","volume":"7","author":"L. Eronen","year":"2006","unstructured":"Eronen, L., Geerts, F., Toivonen, H.: Haplorec: efficient and accurate large-scale reconstruction of haplotypes. BMC Bioinformatics\u00a07, 542 (2006)","journal-title":"BMC Bioinformatics"},{"key":"12_CR6","doi-asserted-by":"publisher","first-page":"305","DOI":"10.1089\/10665270152530863","volume":"8","author":"D. Gusfield","year":"2001","unstructured":"Gusfield, D.: Inference of haplotypes from samples of diploids populations: Complexity and algorithms. Journal of Computational Biology\u00a08, 305\u2013323 (2001)","journal-title":"Journal of Computational Biology"},{"key":"12_CR7","doi-asserted-by":"crossref","unstructured":"Gusfield, D.: Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions. In: International Conference on Research in Computational Molecular Biology (RECOMB), pp. 166\u2013175 (2002)","DOI":"10.1145\/565196.565218"},{"key":"12_CR8","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"144","DOI":"10.1007\/3-540-44888-8_11","volume-title":"Combinatorial Pattern Matching","author":"D. Gusfield","year":"2003","unstructured":"Gusfield, D.: Haplotype Inference by Pure Parsimony. In: Baeza-Yates, R., Ch\u00e1vez, E., Crochemore, M. (eds.) CPM 2003. LNCS, vol.\u00a02676, pp. 144\u2013155. Springer, Heidelberg (2003)"},{"key":"12_CR9","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1007\/978-3-540-24719-7_3","volume-title":"Computational Methods for SNPs and Haplotype Inference","author":"B.V. Halld\u00f3rsson","year":"2004","unstructured":"Halld\u00f3rsson, B.V., Bafna, V., Edwards, N., Lippert, R., Yooseph, S., Istrail, S.: A Survey of Computational Methods for Determining Haplotypes. In: Istrail, S., Waterman, M.S., Clark, A. (eds.) SNPs and Haplotype Inference. LNCS (LNBI), vol.\u00a02983, pp. 26\u201347. Springer, Heidelberg (2004)"},{"key":"12_CR10","doi-asserted-by":"publisher","first-page":"348","DOI":"10.1287\/ijoc.1040.0085","volume":"16","author":"G. Lancia","year":"2004","unstructured":"Lancia, G., Pinotti, C.M., Rizzi, R.: Haplotype haplotyping populations by pure parsimony: Complexity of exact and approximation algorithms. INFORMS J. Computing\u00a016, 348\u2013359 (2004)","journal-title":"INFORMS J. Computing"},{"key":"12_CR11","doi-asserted-by":"publisher","first-page":"3475","DOI":"10.1093\/bioinformatics\/bti572","volume":"21","author":"Z. Li","year":"2005","unstructured":"Li, Z., Zhou, W., Zhang, X.S., Chen, L.: A parsimonious tree-grow method for haplotype inference. Bioinformatics\u00a021, 3475\u20133481 (2005)","journal-title":"Bioinformatics"},{"issue":"5","key":"12_CR12","doi-asserted-by":"publisher","first-page":"1129","DOI":"10.1086\/344347","volume":"71","author":"S. Lin","year":"2002","unstructured":"Lin, S., Cutler, D.J., Zwick, M.E., Chakravarti, A.: Haplotype inference in random population samples. Am. J. Hum. Genet.\u00a071(5), 1129\u20131137 (2002)","journal-title":"Am. J. Hum. Genet."},{"key":"12_CR13","unstructured":"Montgomery, D., Runger, G.: Applied statistics and probability for engineers, 4th edn. LTC (2003)"},{"issue":"10","key":"12_CR14","doi-asserted-by":"publisher","first-page":"1061","DOI":"10.1111\/j.1461-0248.2009.01361.x","volume":"12","author":"P.A. Murtaugh","year":"2009","unstructured":"Murtaugh, P.A.: Performance of several variable-selection methods applied to real ecological data. Ecology Letters\u00a012(10), 1061\u20131068 (2009)","journal-title":"Ecology Letters"},{"key":"12_CR15","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1086\/338446","volume":"70","author":"T. Niu","year":"2002","unstructured":"Niu, T., Qin, Z.S., Xu, X., Liu, J.S.: Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am. J. Hum. Genet.\u00a070, 157\u2013169 (2002)","journal-title":"Am. J. Hum. Genet."},{"key":"12_CR16","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1007\/978-3-642-15060-9_5","volume-title":"Advances in Bioinformatics and Computational Biology","author":"R.S. Rosa","year":"2010","unstructured":"Rosa, R.S., Guimar\u00e3es, K.S.: Insights on Haplotype Inference on Large Genotype Datasets. In: Ferreira, C.E., Miyano, S., Stadler, P.F. (eds.) BSB 2010. LNCS, vol.\u00a06268, pp. 47\u201358. Springer, Heidelberg (2010)"},{"key":"12_CR17","doi-asserted-by":"crossref","unstructured":"Rosa, R.S., Santos, R.H.S., Guimar\u00e3es, K.S.: Accurate prediction of error in haplotype inference methods through neural networks. In: Proc. of the IJCNN 2012 (2012)","DOI":"10.1109\/IJCNN.2012.6252557"},{"issue":"4","key":"12_CR18","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1086\/502802","volume":"78","author":"P. Scheet","year":"2006","unstructured":"Scheet, P., Stephens, M.: A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet.\u00a078(4), 629\u2013644 (2006)","journal-title":"Am. J. Hum. Genet."},{"key":"12_CR19","doi-asserted-by":"publisher","first-page":"978","DOI":"10.1086\/319501","volume":"68","author":"M. Stephens","year":"2001","unstructured":"Stephens, M., Smith, N., Donnelly, P.: A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet.\u00a068, 978\u2013989 (2001)","journal-title":"Am. J. Hum. Genet."},{"key":"12_CR20","doi-asserted-by":"publisher","first-page":"937","DOI":"10.1002\/gepi.20253","volume":"31","author":"S. Sun","year":"2007","unstructured":"Sun, S., Greenwood, C.M., Neal, R.M.: Haplotype inference using a bayesian hidden markov model. Genet. Epidemiol.\u00a031, 937\u2013948 (2007)","journal-title":"Genet. Epidemiol."},{"key":"12_CR21","unstructured":"Team, R.D.C.: R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria (2011)"},{"key":"12_CR22","unstructured":"Wu, L., Zang, J., Chan, R.: Improved approach for haplotype inference based on markov chain. Lecture Notes in Operations Research, pp. 204\u2013215 (2008)"}],"container-title":["Lecture Notes in Computer Science","Advances in Bioinformatics and Computational Biology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-31927-3_12","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,7]],"date-time":"2019-05-07T00:35:36Z","timestamp":1557189336000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-31927-3_12"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012]]},"ISBN":["9783642319266","9783642319273"],"references-count":22,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-31927-3_12","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2012]]}}}