{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,4]],"date-time":"2024-09-04T13:03:42Z","timestamp":1725455022430},"publisher-location":"Berlin, Heidelberg","reference-count":17,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642331213"},{"type":"electronic","value":"9783642331220"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012]]},"DOI":"10.1007\/978-3-642-33122-0_5","type":"book-chapter","created":{"date-parts":[[2012,8,28]],"date-time":"2012-08-28T06:43:09Z","timestamp":1346136189000},"page":"57-68","source":"Crossref","is-referenced-by-count":1,"title":["Reconstructing the Evolution of Molecular Interaction Networks under the DMC and Link Dynamics Models"],"prefix":"10.1007","author":[{"given":"Yun","family":"Zhu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luay","family":"Nakhleh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"5","key":"5_CR1","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1145\/2160718.2160738","volume":"55","author":"N. Atias","year":"2012","unstructured":"Atias, N., Sharan, R.: Comparative analysis of protein networks: hard problems, practical solutions. Commun. ACM\u00a055(5), 88\u201397 (2012)","journal-title":"Commun. ACM"},{"key":"5_CR2","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1016\/j.ympev.2008.07.008","volume":"49","author":"S. Bourlat","year":"2008","unstructured":"Bourlat, S., Nielsen, C., Economou, A.D., Telford, M.J.: Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom. Molecular Phylogenetics and Evolution\u00a049, 23\u201331 (2008)","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"5_CR3","doi-asserted-by":"publisher","first-page":"745","DOI":"10.1038\/nature06614","volume":"452","author":"C.W. Dunn","year":"2008","unstructured":"Dunn, C.W., Hejnol, A., Matus, D.Q., Pang, K., Browne, W.E., Smith, S.A., Seaver, E., Rouse, G.W., Obst, M., Edgecombe, G.D., Sorensen, M.V., Haddock, S.H., Schmidt-Rhaesa, A., Okusu, A., Kristensen, R.M., Wheeler, W.C., Martindale, M.Q., Giribet, G.: Broad phylogenomic sampling improves resolution of the animal tree of life. Nature\u00a0452, 745\u2013749 (2008)","journal-title":"Nature"},{"key":"5_CR4","doi-asserted-by":"crossref","unstructured":"Gibson, T.A., Goldberg, D.S.: Reverse engineering the evolution of protein interaction networks. In: Pacific Symposium on Biocomputing, pp. 190\u2013202 (September 2008)","DOI":"10.1142\/9789812836939_0019"},{"key":"5_CR5","doi-asserted-by":"crossref","unstructured":"Jukes, T.H., Cantor, C.R.: Evolution of protein molecules. In: Mammalian Protein Metabolism, pp. 21\u2013132 (1969)","DOI":"10.1016\/B978-1-4832-3211-9.50009-7"},{"key":"5_CR6","doi-asserted-by":"crossref","unstructured":"Li, S., Choi, P., Wu, T., Zhang, L.: Reconstruction of network evolutionary history from extant network topology and duplication history. Quantitative Biology, arXiv:1203.2430 (March 2012)","DOI":"10.1007\/978-3-642-30191-9_16"},{"issue":"8","key":"5_CR7","doi-asserted-by":"publisher","first-page":"1000868","DOI":"10.1371\/journal.pcbi.1000868","volume":"6","author":"A. Mithani","year":"2010","unstructured":"Mithani, A., Preston, G.M., Hein, J.: A Bayesian approach to the evolution of metabolic networks on a phylogeny. PLoS Computational Biology\u00a06(8), e1000868 (2010)","journal-title":"PLoS Computational Biology"},{"issue":"4","key":"5_CR8","doi-asserted-by":"publisher","first-page":"1001119","DOI":"10.1371\/journal.pcbi.1001119","volume":"7","author":"S. Navlakha","year":"2011","unstructured":"Navlakha, S., Kingsford, C.: Network archaeology: uncovering ancient networks from present-day interactions. PLoS Computational Biology\u00a07(4), e1001119 (2011)","journal-title":"PLoS Computational Biology"},{"key":"5_CR9","doi-asserted-by":"publisher","first-page":"1372","DOI":"10.1038\/ng1686","volume":"37","author":"C. P\u00e1l","year":"2005","unstructured":"P\u00e1l, C., Papp, B., Lercher, M.: Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nature Genetics\u00a037, 1372\u20131375 (2005)","journal-title":"Nature Genetics"},{"key":"5_CR10","doi-asserted-by":"publisher","first-page":"2397","DOI":"10.1093\/molbev\/msp150","volume":"26","author":"J. Paps","year":"2009","unstructured":"Paps, J., Baguna, J., Riutort, M.: Bilaterian phylogeny: a broad sampling of 13 nuclear genes provides a new lophotrochozoa phylogeny and supports a paraphyletic basal a coelomorpha. Molecular Biology and Evolution\u00a026, 2397\u20132406 (2009)","journal-title":"Molecular Biology and Evolution"},{"key":"5_CR11","series-title":"LNCS (LNBI)","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1007\/978-3-642-23038-7_21","volume-title":"Algorithms in Bioinformatics","author":"R. Patro","year":"2011","unstructured":"Patro, R., Sefer, E., Malin, J., Mar\u00e7ais, G., Navlakha, S., Kingsford, C.: Parsimonious Reconstruction of Network Evolution. In: Przytycka, T.M., Sagot, M.-F. (eds.) WABI 2011. LNCS (LNBI), vol.\u00a06833, pp. 237\u2013249. Springer, Heidelberg (2011)"},{"issue":"51","key":"5_CR12","doi-asserted-by":"publisher","first-page":"20449","DOI":"10.1073\/pnas.0706339104","volume":"104","author":"J.W. Pinney","year":"2007","unstructured":"Pinney, J.W., Amoutzias, G.D., Rattray, M., Robertson, D.L.: Reconstruction of ancestral protein interaction networks for the bZIP transcription factors. PNAS\u00a0104(51), 20449\u201320453 (2007)","journal-title":"PNAS"},{"key":"5_CR13","doi-asserted-by":"crossref","unstructured":"Ratmann, O., J\u00f8rgensen, O., Hinkley, T., Stumpf, M.P.H., Richardson, S., Wiuf, C.: Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. PLoS Computational Biology\u00a03(11), e230 (2007)","DOI":"10.1371\/journal.pcbi.0030230"},{"key":"5_CR14","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1186\/1745-6150-3-7","volume":"3","author":"I.B. Rogozin","year":"2008","unstructured":"Rogozin, I.B., Thomson, K., Carmel, L., Koonin, E.V.: Homoplasy in genome-wide analsis of rare amino acid replacemeents: the molecular-evolutionary basis for Vavilov\u2019s law of homologous series. Biology Direct\u00a03, 7 (2008)","journal-title":"Biology Direct"},{"issue":"4","key":"5_CR15","doi-asserted-by":"publisher","first-page":"427","DOI":"10.1038\/nbt1196","volume":"24","author":"R. Sharan","year":"2006","unstructured":"Sharan, R., Ideker, T.: Modeling cellular machinery through biological network comparison. Nature Biotechnology\u00a024(4), 427\u2013433 (2006)","journal-title":"Nature Biotechnology"},{"key":"5_CR16","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1007\/11599128_5","volume-title":"Transactions on Computational Systems Biology III","author":"M.P.H. Stumpf","year":"2005","unstructured":"Stumpf, M.P.H., Ingram, P.J., Nouvel, I., Wiuf, C.: Statistical Model Selection Methods Applied to Biological Networks. In: Priami, C., Merelli, E., Gonzalez, P., Omicini, A. (eds.) Transactions on Computational Systems Biology III. LNCS (LNBI), vol.\u00a03737, pp. 65\u201377. Springer, Heidelberg (2005)"},{"issue":"20","key":"5_CR17","doi-asserted-by":"publisher","first-page":"7566","DOI":"10.1073\/pnas.0600061103","volume":"103","author":"C. Wiuf","year":"2006","unstructured":"Wiuf, C., Brameier, M., Hagberg, O., Stumpf, M.P.H.: A likelihood approach to analysis of network data. PNAS\u00a0103(20), 7566\u20137570 (2006)","journal-title":"PNAS"}],"container-title":["Lecture Notes in Computer Science","Algorithms in Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-33122-0_5.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,5,4]],"date-time":"2021-05-04T07:56:05Z","timestamp":1620114965000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-33122-0_5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012]]},"ISBN":["9783642331213","9783642331220"],"references-count":17,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-33122-0_5","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2012]]}}}