{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,9]],"date-time":"2024-09-09T16:51:50Z","timestamp":1725900710165},"publisher-location":"Berlin, Heidelberg","reference-count":18,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642334115"},{"type":"electronic","value":"9783642334122"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012]]},"DOI":"10.1007\/978-3-642-33412-2_56","type":"book-chapter","created":{"date-parts":[[2012,9,21]],"date-time":"2012-09-21T21:07:08Z","timestamp":1348261628000},"page":"545-555","source":"Crossref","is-referenced-by-count":1,"title":["Multi-genome Core Pathway Identification through Gene Clustering"],"prefix":"10.1007","author":[{"given":"Dimitrios M.","family":"Vitsios","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fotis E.","family":"Psomopoulos","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pericles A.","family":"Mitkas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christos A.","family":"Ouzounis","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"1","key":"56_CR1","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1093\/nar\/28.1.27","volume":"28","author":"M. Kanehisa","year":"2000","unstructured":"Kanehisa, M., Goto, S.: KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Research\u00a028(1), 27\u201330 (2000)","journal-title":"Nucleic Acids Research"},{"issue":"252","key":"56_CR2","first-page":"1","volume":"7","author":"Y. Zhang","year":"2006","unstructured":"Zhang, Y., et al.: Phylophenetic properties of metabolic pathway topologies as revealed by global analysis. BMC Bioinformatics\u00a07(252), 1\u201313 (2006)","journal-title":"BMC Bioinformatics"},{"issue":"6","key":"56_CR3","doi-asserted-by":"publisher","first-page":"336","DOI":"10.1016\/S0968-0004(03)00114-2","volume":"28","author":"S. Schmid","year":"2003","unstructured":"Schmid, S., Sunyaev, S., Bork, P., Dandekar, T.: Metabolites: a helping hand for pathway evolution? Trends in Biochemical Sciences\u00a028(6), 336\u2013341 (2003)","journal-title":"Trends in Biochemical Sciences"},{"issue":"3-4","key":"56_CR4","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1089\/106652799318319","volume":"6","author":"C.V. Forst","year":"1999","unstructured":"Forst, C.V., Schulten, K.: Evolution of metabolisms: a new method for the comparison of metabolic pathways using genomics information. Journal of Computational Biology\u00a06(3-4), 343\u2013360 (1999)","journal-title":"Journal of Computational Biology"},{"issue":"6","key":"56_CR5","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1007\/s002390010178","volume":"52","author":"C.V. Forst","year":"2001","unstructured":"Forst, C.V., Schulten, K.: Phylogenetic analysis of metabolic pathways. Journal of Molecular Evolution\u00a052(6), 471\u2013489 (2001)","journal-title":"Journal of Molecular Evolution"},{"issue":"suppl. 1","key":"56_CR6","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1093\/bioinformatics\/btg1018","volume":"19","author":"M. Heymans","year":"2003","unstructured":"Heymans, M., Singh, A.K.: Deriving phylogenetic trees from the similarity analysis of metabolic pathways. Bioinformatics\u00a019(suppl. 1), I138\u2013I146 (2003)","journal-title":"Bioinformatics"},{"key":"56_CR7","unstructured":"Liao, L., Kim, S., Tomb, J.F.: Genome Comparisons Based on Profiles of Metabolic Pathway. In: Sixth International Conference on Knowledge-Based Intelligent Information & Engineering Systems, Crema, Italy, September 16-18 (2002)"},{"issue":"2","key":"56_CR8","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1007\/s00253-004-1641-3","volume":"65","author":"S.H. Hong","year":"2004","unstructured":"Hong, S.H., Kim, T.Y., Lee, S.Y.: Phylogenetic analysis based on genome-scale metabolic pathway reaction content. Applied Microbiology and Biotechnology\u00a065(2), 203\u2013210 (2004)","journal-title":"Applied Microbiology and Biotechnology"},{"issue":"3","key":"56_CR9","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1016\/j.jmb.2004.04.059","volume":"340","author":"D. Aguila","year":"2004","unstructured":"Aguila, D., Aviles, F.X., Querol, E., Sternberg, M.J.: Analysis of phenetic trees based on metabolic capabilites across the three domains of life. Journal of Molecular Biology\u00a0340(3), 491\u2013512 (2004)","journal-title":"Journal of Molecular Biology"},{"key":"56_CR10","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1186\/1471-2105-10-86","volume":"10","author":"F.P.Y. Lin","year":"2009","unstructured":"Lin, F.P.Y., Coiera, E., Lan, R., Sintchenko, V.: In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles. BMC Bioinformatics\u00a010, 86 (2009), doi:10.1186\/1471-2105-10-86","journal-title":"BMC Bioinformatics"},{"issue":"2","key":"56_CR11","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1109\/TCBB.2008.32","volume":"7","author":"G. Gupta","year":"2010","unstructured":"Gupta, G., Liu, A., Ghost, J.: Automated Hierarchical Density Shaving: A Robust Automated Clustering and Visualization Framework for Large Biological Data Sets. IEEE Transactions on Computational Biology and Bioinformatics\u00a07(2), 223\u2013237 (2010)","journal-title":"IEEE Transactions on Computational Biology and Bioinformatics"},{"key":"56_CR12","doi-asserted-by":"crossref","unstructured":"Psomopoulos, F., Mitkas, P.: Multi Level Clustering of Phylogenetic Profiles. In: Proceedings of the IEEE International Conference on Bioinformatics and Bioengineering (BIBE 2010), pp. 308\u2013309 (2010)","DOI":"10.1109\/BIBE.2010.67"},{"issue":"7","key":"56_CR13","doi-asserted-by":"publisher","first-page":"1575","DOI":"10.1093\/nar\/30.7.1575","volume":"30","author":"A.J. Enright","year":"2002","unstructured":"Enright, A.J., Van Dongen, S., Ouzounis, C.A.: An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research\u00a030(7), 1575\u20131584 (2002)","journal-title":"Nucleic Acids Research"},{"issue":"1","key":"56_CR14","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.2517-6161.1977.tb01600.x","volume":"39","author":"A.P. Dempster","year":"1977","unstructured":"Dempster, A.P., Laird, N.M., Rubin, D.B.: Maximum Likelihood from Incomplete Data via the EM Algorithm. Journal of the Royal Statistical Society, Series B (Methodological)\u00a039(1), 1\u201338 (1977)","journal-title":"Journal of the Royal Statistical Society, Series B (Methodological)"},{"key":"56_CR15","unstructured":"van Dongen, S.: Graph Clustering by Flow Simulation, PhD thesis, University of Utrecht (May 2000), \n                    \n                      http:\/\/www.library.uu.nl\/digiarchief\/dip\/diss\/1895620\/inhoud.html\n                    \n                    \n                  , \n                    \n                      http:\/\/micans.org\/mcl"},{"key":"56_CR16","doi-asserted-by":"crossref","unstructured":"Hall, M., Frank, E., Holmes, G., Pfahringer, B., Reutemann, P., Witten, I.H.: The WEKA Data Mining Software: An Update. SIGKDD Explorations\u00a011(1) (2009), \n                    \n                      http:\/\/www.cs.waikato.ac.nz\/ml\/weka","DOI":"10.1145\/1656274.1656278"},{"key":"56_CR17","unstructured":"Matlab Bioinformatics Toolbox, \n                    \n                      http:\/\/www.mathworks.com\/products\/bioinfo"},{"key":"56_CR18","unstructured":"Matlab MCR Runtime Engine, \n                    \n                      http:\/\/www.mathworks.com\/products\/compiler"}],"container-title":["IFIP Advances in Information and Communication Technology","Artificial Intelligence Applications and Innovations"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-33412-2_56.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,5,4]],"date-time":"2021-05-04T12:07:59Z","timestamp":1620130079000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-33412-2_56"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012]]},"ISBN":["9783642334115","9783642334122"],"references-count":18,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-33412-2_56","relation":{},"ISSN":["1868-4238","1861-2288"],"issn-type":[{"type":"print","value":"1868-4238"},{"type":"electronic","value":"1861-2288"}],"subject":[],"published":{"date-parts":[[2012]]}}}