{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,7]],"date-time":"2024-09-07T09:48:13Z","timestamp":1725702493788},"publisher-location":"Berlin, Heidelberg","reference-count":29,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642338595"},{"type":"electronic","value":"9783642338601"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012]]},"DOI":"10.1007\/978-3-642-33860-1_2","type":"book-chapter","created":{"date-parts":[[2012,9,26]],"date-time":"2012-09-26T22:44:30Z","timestamp":1348699470000},"page":"11-26","source":"Crossref","is-referenced-by-count":1,"title":["Theory and Applications of DNA Codeword Design"],"prefix":"10.1007","author":[{"given":"Max H.","family":"Garzon","sequence":"first","affiliation":[]}],"member":"297","reference":[{"key":"2_CR1","doi-asserted-by":"publisher","first-page":"1021","DOI":"10.1126\/science.7973651","volume":"266","author":"L. Adleman","year":"1994","unstructured":"Adleman, L.: Molecular computation of solutions of combinatorial problems. Science\u00a0266, 1021\u20131024 (1994)","journal-title":"Science"},{"issue":"3","key":"2_CR2","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1007\/BF03037360","volume":"20","author":"M. Arita","year":"2002","unstructured":"Arita, M., Kobayashi, S.: DNA Sequence Design Using Templates. New Generation Computing\u00a020(3), 263\u2013277 (2002)","journal-title":"New Generation Computing"},{"key":"2_CR3","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1007\/11925903_26","volume-title":"DNA Computing","author":"K.C. Bobba","year":"2006","unstructured":"Bobba, K.C., Neel, A.J., Phan, V., Garzon, M.H.: \u201cReasoning\u201d and \u201cTalking\u201d DNA: Can DNA Understand English? In: Mao, C., Yokomori, T. (eds.) DNA12. LNCS, vol.\u00a04287, pp. 337\u2013349. Springer, Heidelberg (2006)"},{"issue":"2","key":"2_CR4","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1007\/s11047-005-4460-2","volume":"5","author":"J. Chen","year":"2006","unstructured":"Chen, J., Deaton, R., Garzon, M., Wood, D.H., Bi, H., Carpenter, D., Wang, Y.Z.: Characterization of Non-Crosshybridizing DNA Oligonucleotides Manufactured in vitro. J. of Natural Computing\u00a05(2), 165\u2013181 (2006)","journal-title":"J. of Natural Computing"},{"key":"2_CR5","first-page":"152","volume-title":"Test Tube Selection of Large Independent Sets of DNA Oligonucleotides","author":"J. Deaton","year":"2006","unstructured":"Deaton, J., Chen, J., Garzon, M., Wood, D.H.: Test Tube Selection of Large Independent Sets of DNA Oligonucleotides, pp. 152\u2013166. World Publishing Co., Singapore (2006) (Volume dedicated to Ned Seeman on occasion of his 60th birthday)"},{"key":"2_CR6","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1007\/978-3-642-10604-0_4","volume-title":"DNA Computing and Molecular Programming","author":"D. Doty","year":"2009","unstructured":"Doty, D., Patitz, M.J., Summers, S.M.: Limitations of Self-assembly at Temperature One. In: Deaton, R., Suyama, A. (eds.) DNA 15. LNCS, vol.\u00a05877, pp. 35\u201344. Springer, Heidelberg (2009)"},{"key":"2_CR7","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1007\/978-3-642-32208-2_6","volume-title":"DNA Computing and Molecular Programming","author":"M.H. Garzon","year":"2012","unstructured":"Garzon, M.H., Bobba, K.: A Geometric Approach to Gibbs Energy Landscapes and Optimal DNA Codeword Design. In: Stefanovic, D., Turberfield, A. (eds.) DNA 18. LNCS, vol.\u00a07433, pp. 73\u201385. Springer, Heidelberg (2012)"},{"issue":"3","key":"2_CR8","doi-asserted-by":"publisher","first-page":"25","DOI":"10.4018\/jnmc.2010070102","volume":"2","author":"M.H. Garzon","year":"2010","unstructured":"Garzon, M.H., Bobba, K.C., Neel, A.J., Phan, V.: DNA-Based Indexing. Int. J. of Nanotechnology and Molecular Computing\u00a02(3), 25\u201345 (2010)","journal-title":"Int. J. of Nanotechnology and Molecular Computing"},{"key":"2_CR9","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1007\/s11047-010-9232-y","volume":"10","author":"M.H. Garzon","year":"2011","unstructured":"Garzon, M.H., Wong, T.Y.: DNA Chips for Species identification and Biological Phylogenies. J. Natural Computing\u00a010, 375\u2013389 (2011)","journal-title":"J. Natural Computing"},{"key":"2_CR10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.4018\/jnmc.2009010101","volume":"1","author":"M.H. Garzon","year":"2009","unstructured":"Garzon, M.H., Phan, V., Neel, A.: Optimal Codes for Computing and Self-Assembly. Int. J. of Nanotechnology and Molecular Computing\u00a01, 1\u201317 (2009)","journal-title":"Int. J. of Nanotechnology and Molecular Computing"},{"key":"2_CR11","series-title":"Lecture Notes in Computer Science","volume-title":"DNA Computing","year":"2008","unstructured":"Garzon, M.H., Yan, H. (eds.): DNA 2007. LNCS, vol.\u00a04848. Springer, Heidelberg (2008)"},{"key":"2_CR12","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1007\/11753681_7","volume-title":"DNA Computing","author":"M.H. Garzon","year":"2006","unstructured":"Garzon, M.H., Phan, V., Bobba, K.C., Kontham, R.: Sensitivity and Capacity of Microarray Encodings. In: Carbone, A., Pierce, N.A. (eds.) DNA 2005. LNCS, vol.\u00a03892, pp. 81\u201395. Springer, Heidelberg (2006)"},{"issue":"3","key":"2_CR13","doi-asserted-by":"publisher","first-page":"253","DOI":"10.1023\/B:NACO.0000036818.27537.c9","volume":"3","author":"M.H. Garzon","year":"2004","unstructured":"Garzon, M.H., Deaton, R.: Codeword Design and Information Encoding in DNA Ensembles. J. of Natural Computing\u00a03(3), 253\u2013292 (2004)","journal-title":"J. of Natural Computing"},{"issue":"4","key":"2_CR14","doi-asserted-by":"publisher","first-page":"461","DOI":"10.1007\/s11047-004-2642-y","volume":"3","author":"M.H. Garzon","year":"2004","unstructured":"Garzon, M.H., Blain, D., Neel, A.J.: Virtual Test Tubes for Biomolecular Computing. J. of Natural Computing\u00a03(4), 461\u2013477 (2004)","journal-title":"J. of Natural Computing"},{"key":"2_CR15","unstructured":"Garzon, M.H., Neathery, P.I., Deaton, R., Murphy, R.C., Franceschetti, D.R., Stevens Jr., S.E.: A New Metric for DNA Computing. In: Koza, J.R., et al. (eds.) Proc. 2nd Annual Genetic Programming Conference, pp. 230\u2013237. Morgan Kaufmann (1997)"},{"issue":"3","key":"2_CR16","doi-asserted-by":"publisher","first-page":"201","DOI":"10.1089\/10665270152530818","volume":"8","author":"A. Marathe","year":"2001","unstructured":"Marathe, A., Condon, A.E., Corn, R.M.: On combinatorial DNA word design. J. Computational Biology\u00a08(3), 201\u2013219 (2001)","journal-title":"J. Computational Biology"},{"key":"2_CR17","doi-asserted-by":"crossref","unstructured":"Neel, A.J., Garzon, M.H.: DNA-based Memories: A Survey. SCI, vol.\u00a0113, pp. 259\u2013275. Springer (2008)","DOI":"10.1007\/978-3-540-78291-9_8"},{"issue":"1","key":"2_CR18","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1021\/bp050141a","volume":"22","author":"A. Neel","year":"2006","unstructured":"Neel, A., Garzon, M.H.: Semantic Retrieval in DNA-Based Memories with Gibbs Energy Models. Biotechnology Progress\u00a022(1), 86\u201390 (2006)","journal-title":"Biotechnology Progress"},{"issue":"3","key":"2_CR19","doi-asserted-by":"publisher","first-page":"571","DOI":"10.1007\/s11047-008-9088-6","volume":"8","author":"V. Phan","year":"2009","unstructured":"Phan, V., Garzon, M.H.: On Codeword Design in Metric DNA Spaces. J. Natural Computing\u00a08(3), 571\u2013588 (2009)","journal-title":"J. Natural Computing"},{"key":"2_CR20","volume-title":"The Theory of Error-Correcting Codes","author":"J. Roman","year":"1995","unstructured":"Roman, J.: The Theory of Error-Correcting Codes. Springer, Berlin (1995)"},{"key":"2_CR21","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"290","DOI":"10.1007\/11753681_23","volume-title":"DNA Computing","author":"S. Sahu","year":"2006","unstructured":"Sahu, S., Yin, P., Reif, J.H.: A Self-assembly Model of Time-Dependent Glue Strength. In: Carbone, A., Pierce, N.A. (eds.) DNA 11. LNCS, vol.\u00a03892, pp. 290\u2013304. Springer, Heidelberg (2006)"},{"issue":"4","key":"2_CR22","doi-asserted-by":"publisher","first-page":"1460","DOI":"10.1073\/pnas.95.4.1460","volume":"95","author":"J. SantaLucia","year":"1998","unstructured":"SantaLucia, J.: A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci.\u00a095(4), 1460\u20131465 (1998)","journal-title":"Proc. Natl. Acad. Sci."},{"key":"2_CR23","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1016\/0022-5193(82)90002-9","volume":"99","author":"N. Seeman","year":"1982","unstructured":"Seeman, N.: Nuclei-Acid Junctions and Lattices. J. Theoretical Biology\u00a099, 237\u2013247 (1982)","journal-title":"J. Theoretical Biology"},{"key":"2_CR24","doi-asserted-by":"publisher","first-page":"427","DOI":"10.1038\/nature01406","volume":"421","author":"N. Seeman","year":"2003","unstructured":"Seeman, N.: DNA in a material world. Nature\u00a0421, 427\u2013431 (2003)","journal-title":"Nature"},{"key":"2_CR25","doi-asserted-by":"publisher","first-page":"255501","DOI":"10.1103\/PhysRevLett.106.255501","volume":"106","author":"A.V. Tkachenko","year":"2011","unstructured":"Tkachenko, A.V.: Theory of Programmable Hierarchic Self-Assembly. Phys. Rev. Lett.\u00a0106, 255501 (2011)","journal-title":"Phys. Rev. Lett."},{"issue":"15","key":"2_CR26","doi-asserted-by":"publisher","first-page":"4951","DOI":"10.1093\/nar\/gki773","volume":"33","author":"D. Tulpan","year":"2005","unstructured":"Tulpan, D., Andronescu, M., Chang, S.B., Shortreed, M.R., Condon, A., Hoos, H.H., Smith, L.M.: Thermodynamically based DNA strand design. Nucleic Acids Res.\u00a033(15), 4951\u20134964 (2005)","journal-title":"Nucleic Acids Res."},{"key":"2_CR27","doi-asserted-by":"publisher","first-page":"1196","DOI":"10.1126\/science.1200520","volume":"332","author":"L. Qian","year":"2011","unstructured":"Qian, L., Winfree, E.: Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades. Science\u00a0332, 1196\u20131201 (2011)","journal-title":"Science"},{"key":"2_CR28","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1038\/28998","volume":"394","author":"E. Winfree","year":"1998","unstructured":"Winfree, E., Liu, F., Wenzler, L.A., Seeman, N.C.: Design and self-assembly of two-dimensional DNA crystals. Nature\u00a0394, 539\u2013544 (1998)","journal-title":"Nature"},{"key":"2_CR29","unstructured":"Winfree, E.: Algorithmic self-assembly of DNA. Ph.D. Thesis, California Institute of Technology (1998)"}],"container-title":["Lecture Notes in Computer Science","Theory and Practice of Natural Computing"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-33860-1_2.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,11,24]],"date-time":"2020-11-24T03:12:55Z","timestamp":1606187575000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-33860-1_2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012]]},"ISBN":["9783642338595","9783642338601"],"references-count":29,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-33860-1_2","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2012]]}}}