{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T04:44:18Z","timestamp":1743050658847,"version":"3.40.3"},"publisher-location":"Berlin, Heidelberg","reference-count":13,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642368110"},{"type":"electronic","value":"9783642368127"}],"license":[{"start":{"date-parts":[[2013,1,1]],"date-time":"2013-01-01T00:00:00Z","timestamp":1356998400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-36812-7_2","type":"book-chapter","created":{"date-parts":[[2013,3,8]],"date-time":"2013-03-08T06:58:32Z","timestamp":1362725912000},"page":"13-24","source":"Crossref","is-referenced-by-count":14,"title":["Hardware Acceleration of Genetic Sequence Alignment"],"prefix":"10.1007","author":[{"given":"J.","family":"Arram","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"K. H.","family":"Tsoi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wayne","family":"Luk","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"P.","family":"Jiang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"2_CR1","unstructured":"http:\/\/www.maxeler.com\/products\/"},{"key":"2_CR2","unstructured":"Ferragina, P., Manzini, G.: An experimental study of an opportunistic index. In: ACM-SIAM Symposium on Discrete Algorithms (SODA 2001), pp. 269\u2013278 (2001)"},{"issue":"3","key":"2_CR3","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1186\/gb-2009-10-3-r25","volume":"10","author":"B. Langmead","year":"2009","unstructured":"Langmead, B., et al.: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology\u00a010(3), R25+ (2009)","journal-title":"Genome Biology"},{"issue":"15","key":"2_CR4","doi-asserted-by":"publisher","first-page":"1966","DOI":"10.1093\/bioinformatics\/btp336","volume":"25","author":"R. Li","year":"2009","unstructured":"Li, R., et al.: SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics\u00a025(15), 1966\u20131967 (2009)","journal-title":"Bioinformatics"},{"key":"2_CR5","unstructured":"Burrows, M., Wheeler, D.: A block-sorting lossless data compression algorithm. Digital Equipment Corporation, Tech. Rep. (1994)"},{"key":"2_CR6","doi-asserted-by":"crossref","unstructured":"Fernandez, E., Najjar, W., Lonardi, S.: String matching in hardware using the FM-index. In: Proc. FCCM, pp. 218\u2013225 (2011)","DOI":"10.1109\/FCCM.2011.55"},{"key":"2_CR7","doi-asserted-by":"crossref","unstructured":"Preuer, T.B., Knodel, O., Spallek, R.G.: Short-read mapping by a systolic custom FPGA computation. In: Proc. FCCM, pp. 169\u2013176 (2012)","DOI":"10.1109\/FCCM.2012.37"},{"key":"2_CR8","doi-asserted-by":"crossref","unstructured":"Tang, W., et al.: Accelerating millions of short reads mapping on a heterogeneous architecture with FPGA accelerator. In: Proc. FCCM, pp. 184\u2013187 (2012)","DOI":"10.1109\/FCCM.2012.39"},{"key":"2_CR9","doi-asserted-by":"crossref","unstructured":"Olson, C.B., et al.: Hardware acceleration of short read mapping. In: Proc. FCCM, pp. 161\u2013168 (2012)","DOI":"10.1109\/FCCM.2012.36"},{"key":"2_CR10","doi-asserted-by":"crossref","unstructured":"Lam, T., Li, R., Tam, A., Wong, S., Wu, E., Yiu, S.: High throughput short read alignment via bi-directional bwt. In: IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 31\u201336 (November 2009)","DOI":"10.1109\/BIBM.2009.42"},{"key":"2_CR11","unstructured":"http:\/\/hgdownload.cse.ucsc.edu\/goldenpath\/hg18\/chromosomes\/"},{"issue":"14","key":"2_CR12","doi-asserted-by":"publisher","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","volume":"25","author":"H. Li","year":"2009","unstructured":"Li, H., Durbin, R.: Fast and accurate short read alignment with burrows wheeler transform. Bioinformatics\u00a025(14), 1754\u20131760 (2009)","journal-title":"Bioinformatics"},{"issue":"6","key":"2_CR13","doi-asserted-by":"publisher","first-page":"878","DOI":"10.1093\/bioinformatics\/bts061","volume":"28","author":"C.-M. Liu","year":"2012","unstructured":"Liu, C.-M., et al.: SOAP3: Ultra-fast GPU-based parallel alignment tool for short reads. Bioinformatics\u00a028(6), 878\u2013879 (2012)","journal-title":"Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Reconfigurable Computing: Architectures, Tools and Applications"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-36812-7_2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,19]],"date-time":"2023-02-19T10:48:47Z","timestamp":1676803727000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-642-36812-7_2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642368110","9783642368127"],"references-count":13,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-36812-7_2","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2013]]}}}