{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,9]],"date-time":"2024-09-09T16:43:34Z","timestamp":1725900214459},"publisher-location":"Berlin, Heidelberg","reference-count":28,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642385261"},{"type":"electronic","value":"9783642385278"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-38527-8_18","type":"book-chapter","created":{"date-parts":[[2013,5,8]],"date-time":"2013-05-08T09:23:02Z","timestamp":1368004982000},"page":"188-199","source":"Crossref","is-referenced-by-count":0,"title":["Finding Modules in Networks with Non-modular Regions"],"prefix":"10.1007","author":[{"given":"Sharon","family":"Bruckner","sequence":"first","affiliation":[]},{"given":"Bastian","family":"Kayser","sequence":"additional","affiliation":[]},{"given":"Tim O. F.","family":"Conrad","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"18_CR1","doi-asserted-by":"crossref","unstructured":"Bader, G.D., Hogue, C.W.: An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4 (2003)","DOI":"10.1186\/1471-2105-4-2"},{"key":"18_CR2","doi-asserted-by":"crossref","first-page":"066118","DOI":"10.1103\/PhysRevE.85.066118","volume":"85","author":"J.P. Bagrow","year":"2012","unstructured":"Bagrow, J.P.: Communities and bottlenecks: Trees and treelike networks have high modularity. Phys. Rev. E\u00a085, 066118 (2012)","journal-title":"Phys. Rev. E"},{"key":"18_CR3","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1007\/s002200200609","volume":"228","author":"A. Bovier","year":"2002","unstructured":"Bovier, A., Eckhoff, M., Gayrard, V., Klein, M.: Metastability and low lying spectra in reversible markov chains. Comm. Math. Phys.\u00a0228, 219\u2013255 (2002)","journal-title":"Comm. Math. Phys."},{"key":"18_CR4","doi-asserted-by":"publisher","first-page":"488","DOI":"10.1186\/1471-2105-7-488","volume":"7","author":"S. Broh\u00e9e","year":"2006","unstructured":"Broh\u00e9e, S., Van Helden, J.: Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics\u00a07, 488 (2006)","journal-title":"BMC Bioinformatics"},{"issue":"7","key":"18_CR5","doi-asserted-by":"publisher","first-page":"1575","DOI":"10.1093\/nar\/30.7.1575","volume":"30","author":"A.J. Enright","year":"2002","unstructured":"Enright, A.J., Van Dongen, S., Ouzounis, C.A.: An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research\u00a030(7), 1575\u20131584 (2002)","journal-title":"Nucleic Acids Research"},{"key":"18_CR6","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"385","DOI":"10.1007\/978-3-540-74553-2_36","volume-title":"Data Warehousing and Knowledge Discovery","author":"Z. Feng","year":"2007","unstructured":"Feng, Z., Xu, X., Yuruk, N., Schweiger, T.A.J.: A novel similarity-based modularity function for graph partitioning. In: Song, I.-Y., Eder, J., Nguyen, T.M. (eds.) DaWaK 2007. LNCS, vol.\u00a04654, pp. 385\u2013396. Springer, Heidelberg (2007)"},{"key":"18_CR7","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1038\/nature02555","volume":"430","author":"J.-D.J. Han","year":"2004","unstructured":"Han, J.-D.J., Bertin, N., Hao, T., et al.: Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature\u00a0430, 88\u201393 (2004)","journal-title":"Nature"},{"key":"18_CR8","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"597","DOI":"10.1007\/978-3-642-02927-1_50","volume-title":"Automata, Languages and Programming","author":"S. Khuller","year":"2009","unstructured":"Khuller, S., Saha, B.: On finding dense subgraphs. In: Albers, S., Marchetti-Spaccamela, A., Matias, Y., Nikoletseas, S., Thomas, W. (eds.) ICALP 2009, Part I. LNCS, vol.\u00a05555, pp. 597\u2013608. Springer, Heidelberg (2009)"},{"issue":"17","key":"18_CR9","doi-asserted-by":"publisher","first-page":"3013","DOI":"10.1093\/bioinformatics\/bth351","volume":"20","author":"A.D. King","year":"2004","unstructured":"King, A.D., Pr\u017eulj, N., Jurisica, I.: Protein complex prediction via cost-based clustering. Bioinformatics\u00a020(17), 3013\u20133020 (2004)","journal-title":"Bioinformatics"},{"issue":"12","key":"18_CR10","doi-asserted-by":"publisher","first-page":"1333","DOI":"10.1002\/bies.20141","volume":"26","author":"R. Krause","year":"2004","unstructured":"Krause, R., von Mering, C., Bork, P., Dandekar, T.: Shared components of protein complexes\u2013versatile building blocks or biochemical artefacts? BioEssays\u00a026(12), 1333\u20131343 (2004)","journal-title":"BioEssays"},{"issue":"4","key":"18_CR11","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1007\/s11222-007-9033-z","volume":"17","author":"U. Luxburg","year":"2007","unstructured":"Luxburg, U.: A tutorial on spectral clustering. Statistics and Computing\u00a017(4), 395\u2013416 (2007)","journal-title":"Statistics and Computing"},{"issue":"2","key":"18_CR12","first-page":"413","volume":"69","author":"M.E.J. Newman","year":"2004","unstructured":"Newman, M.E.J., Girvan, M.: Finding and evaluating community structure in networks. Pattern Recognition Letters\u00a069(2), 413\u2013421 (2004)","journal-title":"Pattern Recognition Letters"},{"key":"18_CR13","first-page":"22","volume":"2009","author":"V. Nicosia","year":"2008","unstructured":"Nicosia, V., Mangioni, G., Carchiolo, V., Malgeri, M.: Extending the definition of modularity to directed graphs with overlapping communities. Journal of Statistical Mechanics: Theory and Experiment\u00a02009, 22 (2008)","journal-title":"Journal of Statistical Mechanics: Theory and Experiment"},{"issue":"7043","key":"18_CR14","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/nature03607","volume":"435","author":"G. Palla","year":"2005","unstructured":"Palla, G., et al.: Uncovering the overlapping community structure of complex networks in nature and society. Nature\u00a0435(7043), 1\u201310 (2005)","journal-title":"Nature"},{"issue":"3","key":"18_CR15","doi-asserted-by":"publisher","first-page":"825","DOI":"10.1093\/nar\/gkn1005","volume":"37","author":"S. Pu","year":"2009","unstructured":"Pu, S., Wong, J., Turner, B., Cho, E., Wodak, S.J.: Up-to-date catalogues of yeast protein complexes. Nucleic Acids Research\u00a037(3), 825\u2013831 (2009)","journal-title":"Nucleic Acids Research"},{"issue":"336","key":"18_CR16","doi-asserted-by":"publisher","first-page":"846","DOI":"10.1080\/01621459.1971.10482356","volume":"66","author":"W.M. Rand","year":"1971","unstructured":"Rand, W.M.: Objective criteria for the evaluation of clustering methods. Journal of the American Statistical Association\u00a066(336), 846\u2013850 (1971)","journal-title":"Journal of the American Statistical Association"},{"issue":"3-5","key":"18_CR17","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1016\/j.physrep.2009.11.002","volume":"486","author":"F. Santo","year":"2010","unstructured":"Santo, F.: Community detection in graphs. Physics Reports\u00a0486(3-5), 75\u2013174 (2010) ISSN 0370-1573","journal-title":"Physics Reports"},{"key":"18_CR18","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1007\/978-3-642-04277-5_18","volume-title":"Artificial Neural Networks \u2013 ICANN 2009","author":"J.M. Santos","year":"2009","unstructured":"Santos, J.M., Embrechts, M.: On the use of the Adjusted Rand Index as a metric for evaluating supervised classification. In: Alippi, C., Polycarpou, M., Panayiotou, C., Ellinas, G. (eds.) ICANN 2009, Part II. LNCS, vol.\u00a05769, pp. 175\u2013184. Springer, Heidelberg (2009)"},{"issue":"4","key":"18_CR19","doi-asserted-by":"publisher","first-page":"1535","DOI":"10.1137\/090758519","volume":"8","author":"M. Sarich","year":"2010","unstructured":"Sarich, M., Schuette, C., Vanden-Eijnden, E.: Optimal fuzzy aggregation of networks. Multiscale Modeling and Simulation\u00a08(4), 1535\u20131561 (2010)","journal-title":"Multiscale Modeling and Simulation"},{"key":"18_CR20","unstructured":"Sarich, M., Djurdjevac, N., Bruckner, S., Conrad, T.O.F., Sch\u00fctte, C.: Modularity revisited: A novel dynamics-based concept for decomposing complex networks. To Appear, Journal of Computational Dynamics (2012), \n                    \n                      http:\/\/publications.mi.fu-berlin.de\/1127\/"},{"key":"18_CR21","doi-asserted-by":"crossref","unstructured":"Satuluri, V., Parthasarathy, S., Ucar, D.: Markov clustering of protein interaction networks with improved balance and scalability. In: Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, BCB 2010, pp. 247\u2013256. ACM (2010)","DOI":"10.1145\/1854776.1854812"},{"key":"18_CR22","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1140\/epjb\/e2008-00418-0","volume":"67","author":"E.N. Sawardecker","year":"2009","unstructured":"Sawardecker, E.N., Sales-Pardo, M., Amaral, L.A.N.: Detection of node group membership in networks with group overlap. EPJ B\u00a067, 277 (2009)","journal-title":"EPJ B"},{"key":"18_CR23","doi-asserted-by":"crossref","unstructured":"Sch\u00fctte, C., Sarich, M.: Metastability and Markov State Models in Molecular Dynamics. Submitted to Courant Lecture Notes (2013)","DOI":"10.1090\/cln\/024"},{"issue":"40","key":"18_CR24","doi-asserted-by":"publisher","first-page":"14718","DOI":"10.1073\/pnas.0603352103","volume":"103","author":"E. Sprinzak","year":"2006","unstructured":"Sprinzak, E., Altuvia, Y., Margalit, H.: Characterization and prediction of protein-protein interactions within and between complexes. PNAS\u00a0103(40), 14718\u201314723 (2006)","journal-title":"PNAS"},{"key":"18_CR25","unstructured":"Weber, M., Rungsarityotin, W., Schliep, A.: Perron cluster analysis and its connection to graph partitioning for noisy data. ZIB Report, 04-39 (2004)"},{"key":"18_CR26","doi-asserted-by":"publisher","first-page":"824","DOI":"10.1145\/1281192.1281280","volume-title":"Proceedings of the 13th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD 2007","author":"X. Xu","year":"2007","unstructured":"Xu, X., Yuruk, N., Feng, Z., Schweiger, T.A.J.: SCAN: a structural clustering algorithm for networks. In: Proceedings of the 13th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD 2007, pp. 824\u2013833. ACM, New York (2007)"},{"issue":"5","key":"18_CR27","doi-asserted-by":"publisher","first-page":"600","DOI":"10.1504\/IJDMB.2010.035903","volume":"4","author":"L. Yu","year":"2010","unstructured":"Yu, L., Gao, L., Sun, P.G.: A hybrid clustering algorithm for identifying modules in protein protein interaction networks. Int. J. Data Min. Bioinformatics\u00a04(5), 600\u2013615 (2010)","journal-title":"Int. J. Data Min. Bioinformatics"},{"issue":"1","key":"18_CR28","doi-asserted-by":"publisher","first-page":"483","DOI":"10.1016\/j.physa.2006.07.023","volume":"374","author":"S. Zhang","year":"2007","unstructured":"Zhang, S., Wang, R., Zhang, X.: Identification of overlapping community structure in complex networks using fuzzy cc-means clustering. Physica A: Statistical Mechanics and its Applications\u00a0374(1), 483\u2013490 (2007)","journal-title":"Physica A: Statistical Mechanics and its Applications"}],"container-title":["Lecture Notes in Computer Science","Experimental Algorithms"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-38527-8_18","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,12]],"date-time":"2019-05-12T19:38:01Z","timestamp":1557689881000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-38527-8_18"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642385261","9783642385278"],"references-count":28,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-38527-8_18","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2013]]}}}