{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,7]],"date-time":"2024-09-07T17:04:27Z","timestamp":1725728667869},"publisher-location":"Berlin, Heidelberg","reference-count":15,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642390524"},{"type":"electronic","value":"9783642390531"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-39053-1_3","type":"book-chapter","created":{"date-parts":[[2013,6,3]],"date-time":"2013-06-03T04:28:12Z","timestamp":1370233692000},"page":"22-31","source":"Crossref","is-referenced-by-count":5,"title":["An Overview of Genomic Distances Modeled with Indels"],"prefix":"10.1007","author":[{"given":"Mar\u00edlia D. V.","family":"Braga","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"3_CR1","unstructured":"Bafna, V., Pevzner, P.: Genome rearrangements and sorting by reversals. In: Proc. of FOCS, pp. 148\u2013157 (1993)"},{"key":"3_CR2","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"163","DOI":"10.1007\/11851561_16","volume-title":"Algorithms in Bioinformatics","author":"A. Bergeron","year":"2006","unstructured":"Bergeron, A., Mixtacki, J., Stoye, J.: A unifying view of genome rearrangements. In: B\u00fccher, P., Moret, B.M.E. (eds.) WABI 2006. LNCS (LNBI), vol.\u00a04175, pp. 163\u2013173. Springer, Heidelberg (2006)"},{"key":"3_CR3","doi-asserted-by":"crossref","unstructured":"Braga, M.D.V., Machado, R., Ribeiro, L.C., Stoye, J.: Genomic distance under gene substitutions. BMC Bioinformatics 12(suppl. 9), S8 (2011)","DOI":"10.1186\/1471-2105-12-S9-S8"},{"key":"3_CR4","doi-asserted-by":"crossref","unstructured":"Braga, M.D.V., Machado, R., Ribeiro, L.C., Stoye, J.: On the weight of indels in genomic distances. BMC Bioinformatics\u00a012(suppl. 9), S13 (2011)","DOI":"10.1186\/1471-2105-12-S9-S13"},{"issue":"9","key":"3_CR5","doi-asserted-by":"crossref","first-page":"1167","DOI":"10.1089\/cmb.2011.0118","volume":"18","author":"M.D.V. Braga","year":"2011","unstructured":"Braga, M.D.V., Willing, E., Stoye, J.: Double cut and join with insertions and deletions. J. Comp. Biol.\u00a018(9), 1167\u20131184 (2011); A preliminary version appeared in Moulton, V., Singh, M. (eds.): WABI 2010. LNCS (LNBI), vol.\u00a06293. Springer, Heidelberg (2010)","journal-title":"J. Comp. Biol."},{"key":"3_CR6","doi-asserted-by":"crossref","unstructured":"da Silva, P.H., Machado, R., Dantas, S., Braga, M.D.V.: Restricted DCJ-indel model: sorting linear genomes with DCJ and indels. In: Proc. of RECOMB-CG 2012, BMC Bioinformatics, vol.\u00a013-S9, p. S14 (2012)","DOI":"10.1186\/1471-2105-13-S19-S14"},{"key":"3_CR7","series-title":"LNBI","doi-asserted-by":"publisher","first-page":"378","DOI":"10.1007\/978-3-642-33122-0_30","volume-title":"Algorithms in Bioinformatics","author":"P.H. Silva da","year":"2012","unstructured":"da Silva, P.H., Braga, M.D.V., Machado, R., Dantas, S.: DCJ-indel distance with distinct operation costs. In: Raphael, B., Tang, J. (eds.) WABI 2012. LNCS (LNBI), vol.\u00a07534, pp. 378\u2013390. Springer, Heidelberg (2012)"},{"issue":"1","key":"3_CR8","first-page":"105","volume":"1","author":"N. El-Mabrouk","year":"2001","unstructured":"El-Mabrouk, N.: Sorting signed permutations by reversals and insertions\/deletions of contiguous segments. J. of Disc. Alg.\u00a01(1), 105\u2013122 (2001)","journal-title":"J. of Disc. Alg."},{"key":"3_CR9","unstructured":"Hannenhalli, S., Pevzner, P.: Transforming men into mice (polynomial algorithm for genomic distance problem). In: Proc. of FOCS, pp. 581\u2013592 (1995)"},{"key":"3_CR10","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1145\/300515.300516","volume":"46","author":"S. Hannenhalli","year":"1999","unstructured":"Hannenhalli, S., Pevzner, P.: Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. of the ACM\u00a046, 1\u201327 (1999); A preliminary version appeared in Proc. of STOC 1995","journal-title":"J. of the ACM"},{"issue":"9","key":"3_CR11","doi-asserted-by":"publisher","first-page":"1231","DOI":"10.1089\/cmb.2011.0116","volume":"18","author":"J. Kov\u00e1c","year":"2011","unstructured":"Kov\u00e1c, J., Warren, R., Braga, M.D.V., Stoye, J.: Restricted DCJ model (the problem of chromosome reincorporation). J. Comp. Biol.\u00a018(9), 1231\u20131241 (2011)","journal-title":"J. Comp. Biol."},{"key":"3_CR12","unstructured":"Meidanis, J., Walter, M.E.M.T., Dias, Z.: Reversal distance of signed circular chromosomes. Technical Report IC-00-23, University of Campinas (2000)"},{"key":"3_CR13","doi-asserted-by":"crossref","unstructured":"Tannier, E., Zheng, C., Sankoff, D.: Multichromosomal median and halving problems under different genomic distances. BMC Bioinformatics\u00a010(120) (2009)","DOI":"10.1186\/1471-2105-10-120"},{"key":"3_CR14","doi-asserted-by":"crossref","unstructured":"Yancopoulos, S., Attie, O., Friedberg, R.: Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics\u00a021 (2005)","DOI":"10.1093\/bioinformatics\/bti535"},{"issue":"10","key":"3_CR15","doi-asserted-by":"publisher","first-page":"1311","DOI":"10.1089\/cmb.2009.0092","volume":"16","author":"S. Yancopoulos","year":"2009","unstructured":"Yancopoulos, S., Friedberg, R.: DCJ path formulation for genome transformations which include insertions, deletions, and duplications. J. Comp. Biol.\u00a016(10), 1311\u20131338 (2009)","journal-title":"J. Comp. Biol."}],"container-title":["Lecture Notes in Computer Science","The Nature of Computation. Logic, Algorithms, Applications"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-39053-1_3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,13]],"date-time":"2019-05-13T16:58:46Z","timestamp":1557766726000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-39053-1_3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642390524","9783642390531"],"references-count":15,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-39053-1_3","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2013]]}}}