{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,7]],"date-time":"2024-09-07T20:50:52Z","timestamp":1725742252000},"publisher-location":"Berlin, Heidelberg","reference-count":25,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642394812"},{"type":"electronic","value":"9783642394829"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-39482-9_78","type":"book-chapter","created":{"date-parts":[[2013,7,23]],"date-time":"2013-07-23T05:49:15Z","timestamp":1374558555000},"page":"677-684","source":"Crossref","is-referenced-by-count":0,"title":["Role of Protein Aggregation and Interactions between \u03b1-Synuclein and Calbindin in Parkinson\u2019s Disease"],"prefix":"10.1007","author":[{"given":"M. Michael","family":"Gromiha","sequence":"first","affiliation":[]},{"given":"S.","family":"Biswal","sequence":"additional","affiliation":[]},{"given":"A. M.","family":"Thangakani","sequence":"additional","affiliation":[]},{"given":"S.","family":"Kumar","sequence":"additional","affiliation":[]},{"given":"G. J.","family":"Masilamoni","sequence":"additional","affiliation":[]},{"given":"D.","family":"Velmurugan","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"78_CR1","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1146\/annurev.biochem.74.082803.133400","volume":"74","author":"M.R. Cookson","year":"2005","unstructured":"Cookson, M.R.: The biochemistry of Parkinson\u2019s disease. Annu. Rev. Biochem.\u00a074, 29\u201352 (2005)","journal-title":"Annu. Rev. Biochem."},{"key":"78_CR2","doi-asserted-by":"publisher","first-page":"1541","DOI":"10.1016\/j.biocel.2012.05.023","volume":"44","author":"G. Invernizzi","year":"2012","unstructured":"Invernizzi, G., Papaleo, E., Sabate, R., Ventura, S.: Protein aggregation: mechanisms and functional consequences. Int. J. Biochem. Cell Biol.\u00a044, 1541\u20131554 (2012)","journal-title":"Int. J. Biochem. Cell Biol."},{"key":"78_CR3","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1016\/S0014-5793(02)02883-1","volume":"522","author":"V.N. Uversky","year":"2002","unstructured":"Uversky, V.N., Fink, A.L.: Amino acid determinants of alpha-synuclein aggregation: putting together pieces of the puzzle. FEBS Lett.\u00a0522, 9\u201313 (2002)","journal-title":"FEBS Lett."},{"key":"78_CR4","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1007\/s12035-012-8332-3","volume":"47","author":"H.H. Yuan","year":"2013","unstructured":"Yuan, H.H., Chen, R.J., Zhu, Y.H., Peng, C.L., Zhu, X.R.: The neuroprotective effect of overexpression of calbindin-D(28k) in an animal model of Parkinson\u2019s disease. Mol. Neurobiol.\u00a047, 117\u2013122 (2013)","journal-title":"Mol. Neurobiol."},{"key":"78_CR5","doi-asserted-by":"publisher","first-page":"11","DOI":"10.2478\/s11535-009-0071-8","volume":"5","author":"W. Zhou","year":"2010","unstructured":"Zhou, W., Long, C., Fink, A., Uversky, V.: Calbindin-D28K acts as a calcium-dependent chaperone suppressing \u03b1-synuclein fibrillation in vitro. Cent. Eur. J. Biol.\u00a05, 11\u201320 (2010)","journal-title":"Cent. Eur. J. Biol."},{"key":"78_CR6","doi-asserted-by":"publisher","first-page":"258","DOI":"10.1093\/nar\/gkg034","volume":"31","author":"C. Mering von","year":"2003","unstructured":"von Mering, C., Huynen, M., Jaeggi, D., Schmidt, S., Bork, P., Snel, B.: STRING: a database of predicted functional associations between proteins. Nucleic Acids Res.\u00a031, 258\u2013261 (2003)","journal-title":"Nucleic Acids Res."},{"issue":"Database issue","key":"78_CR7","doi-asserted-by":"publisher","first-page":"475","DOI":"10.1093\/nar\/gks1200","volume":"41","author":"P.W. Rose","year":"2013","unstructured":"Rose, P.W., Bi, C., Bluhm, W.F., Christie, C.H., Dimitropoulos, D., Dutta, S., Green, R.K., Goodsell, D.S., Prlic, A., Quesada, M., Quinn, G.B., Ramos, A.G., Westbrook, J.D., Young, J., Zardecki, C., Berman, H.M., Bourne, P.E.: The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Res.\u00a041(Database issue), D475\u2013D482 (2013)","journal-title":"Nucleic Acids Res."},{"key":"78_CR8","doi-asserted-by":"publisher","first-page":"725","DOI":"10.1038\/nprot.2010.5","volume":"5","author":"A. Roy","year":"2010","unstructured":"Roy, A., Kucukural, A., Zhang, Y.: I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols\u00a05, 725\u2013738 (2010)","journal-title":"Nature Protocols"},{"key":"78_CR9","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1093\/bioinformatics\/bti770","volume":"22","author":"K. Arnold","year":"2006","unstructured":"Arnold, K., Bordoli, L., Kopp, J., Schwede, T.: The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling. Bioinformatics\u00a022, 195\u2013201 (2006)","journal-title":"Bioinformatics"},{"key":"78_CR10","doi-asserted-by":"crossref","unstructured":"Eswar, N., Marti-Renom, M.A., Webb, B., Madhusudhan, M.S., Eramian, D., Shen, M., Pieper, U., Sali, A.: Comparative Protein Structure Modeling With MODELLER. Current Protocols in Bioinformatics\u00a015(suppl.), 5.6.1\u20135.6.30 (2006)","DOI":"10.1002\/0471250953.bi0506s15"},{"key":"78_CR11","doi-asserted-by":"publisher","first-page":"2398","DOI":"10.1093\/bioinformatics\/btq444","volume":"26","author":"D.W. Ritchie","year":"2010","unstructured":"Ritchie, D.W., Venkatraman, V.: Ultra-fast, F.F.T.: protein docking on graphics processors. Bioinformatics\u00a026, 2398\u20132405 (2010)","journal-title":"Bioinformatics"},{"key":"78_CR12","doi-asserted-by":"crossref","unstructured":"Lyskov, S., Gray, J.J.: The RosettaDock server for local protein-protein docking. Nucleic Acids Research\u00a036(Web Server Issue), W233\u2013W238 (2008)","DOI":"10.1093\/nar\/gkn216"},{"key":"78_CR13","doi-asserted-by":"publisher","first-page":"3124","DOI":"10.1002\/prot.22835","volume":"78","author":"D. Kozakov","year":"2010","unstructured":"Kozakov, D., Hall, D.R., Beglov, D., Brenke, R., Comeau, S.R., Shen, Y., Li, K., Zheng, J., Vakili, P., Paschalidis, I.C., Vajda, S.: Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13\u201319. Proteins: Structure, Function, and Bioinformatics\u00a078, 3124\u20133130 (2010)","journal-title":"Proteins: Structure, Function, and Bioinformatics"},{"key":"78_CR14","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1093\/nar\/gki481","volume":"33","author":"D. Schneidman-Duhovny","year":"2005","unstructured":"Schneidman-Duhovny, D., Inbar, Y., Nussinov, R., Wolfson, H.J.: PatchDock and SymmDock: servers for rigid and symmetric docking. Nucl. Acids. Res.\u00a033, W363\u2013W367 (2005)","journal-title":"Nucl. Acids. Res."},{"issue":"3","key":"78_CR15","doi-asserted-by":"publisher","first-page":"743","DOI":"10.1016\/j.jmb.2004.02.005","volume":"337","author":"W. Li","year":"2004","unstructured":"Li, W., Keeble, A.H., Giffard, C., James, R., Moore, G.R., Kleanthous, C.: Highly discriminating protein-protein interaction specificities in the context of a conserved binding energy hotspot. J. Mol. Biol.\u00a0337(3), 743\u2013759 (2004)","journal-title":"J. Mol. Biol."},{"key":"78_CR16","doi-asserted-by":"publisher","first-page":"1779","DOI":"10.1039\/b904161n","volume":"5","author":"M.M. Gromiha","year":"2009","unstructured":"Gromiha, M.M., Yokota, K., Fukui, K.: Energy based approach for understanding the recognition mechanism in protein-protein complexes. Mol. Biosyst.\u00a05, 1779\u20131786 (2009)","journal-title":"Mol. Biosyst."},{"issue":"11","key":"78_CR17","doi-asserted-by":"publisher","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P. Shannon","year":"2003","unstructured":"Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski, B., Ideker, T.: Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res.\u00a013(11), 2498\u20132504 (2003)","journal-title":"Genome Res."},{"key":"78_CR18","unstructured":"Thangakani, A.M., Kumar, S., Velmurugan, D., Gromiha, M.M.: Distinct position-specific sequence features of hexa-peptides that form amyloid-fibrils: application to discriminate between amyloid fibril and amorphous \u03b2- aggregate forming peptide sequences. BMC Bionformatics (in press)."},{"key":"78_CR19","doi-asserted-by":"publisher","first-page":"1302","DOI":"10.1038\/nbt1012","volume":"22","author":"A.M. Fernandez-Escamilla","year":"2004","unstructured":"Fernandez-Escamilla, A.M., Rousseau, F., Schymkowitz, J., Serrano, L.: Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins. Nat. Biotechnol.\u00a022, 1302\u20131306 (2004)","journal-title":"Nat. Biotechnol."},{"key":"78_CR20","doi-asserted-by":"crossref","unstructured":"Conchillo-Sole, N.S., de, G.A.F.X., Vendrell, J., Daura, X., Ventura, S.: AGGRESCAN: a server for the prediction and evaluation of \u201chot spots\u201d of aggregation in polypeptides. BMC Bioinf., 65 (2007)","DOI":"10.1186\/1471-2105-8-65"},{"key":"78_CR21","doi-asserted-by":"publisher","first-page":"2577","DOI":"10.1002\/bip.360221211","volume":"22","author":"W. Kabsch","year":"1983","unstructured":"Kabsch, W., Sander, C.: Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers\u00a022, 2577\u20132637 (1983)","journal-title":"Biopolymers"},{"key":"78_CR22","doi-asserted-by":"publisher","first-page":"673","DOI":"10.1038\/275673a0","volume":"275","author":"P. Manavalan","year":"1978","unstructured":"Manavalan, P., Ponnuswamy, P.K.: Hydrophobic character of amino acid residues in globular protein. Nature\u00a0275, 673\u2013674 (1978)","journal-title":"Nature"},{"key":"78_CR23","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1006\/jmbi.2001.4775","volume":"310","author":"M.M. Gromiha","year":"2001","unstructured":"Gromiha, M.M., Selvaraj, S.: Comparison between long-range interactions and contact order in determining the folding rates of two-state proteins: application of long-range order to folding rate prediction. J. Mol. Biol.\u00a0310, 27\u201332 (2001)","journal-title":"J. Mol. Biol."},{"issue":"12","key":"78_CR24","doi-asserted-by":"publisher","first-page":"849","DOI":"10.1093\/protein\/13.12.849","volume":"13","author":"D. Gilis","year":"2000","unstructured":"Gilis, D., Rooman, M.: PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins. Protein Eng.\u00a013(12), 849\u2013856 (2000)","journal-title":"Protein Eng."},{"issue":"5","key":"78_CR25","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1186\/1471-2105-5-51","volume":"1","author":"S. Ahmad","year":"2004","unstructured":"Ahmad, S., Gromiha, M., Fawareh, H., Sarai, A.: ASAView: database and tool for solvent accessibility representation in proteins. BMC Bioinformatics\u00a01(5), 51 (2004)","journal-title":"BMC Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Intelligent Computing Theories and Technology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-39482-9_78","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,16]],"date-time":"2019-05-16T02:54:15Z","timestamp":1557975255000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-39482-9_78"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642394812","9783642394829"],"references-count":25,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-39482-9_78","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2013]]}}}