{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,30]],"date-time":"2026-01-30T07:34:57Z","timestamp":1769758497821,"version":"3.49.0"},"publisher-location":"Berlin, Heidelberg","reference-count":28,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"value":"9783642402692","type":"print"},{"value":"9783642402708","type":"electronic"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-40270-8_4","type":"book-chapter","created":{"date-parts":[[2013,8,17]],"date-time":"2013-08-17T05:41:48Z","timestamp":1376718108000},"page":"46-58","source":"Crossref","is-referenced-by-count":24,"title":["DNA Encoding for Splice Site Prediction in Large DNA Sequence"],"prefix":"10.1007","author":[{"given":"A. T. M. Golam","family":"Bari","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mst. Rokeya","family":"Reaz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ho-Jin","family":"Choi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Byeong-Soo","family":"Jeong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"4_CR1","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"121","DOI":"10.1007\/978-3-642-29361-0_16","volume-title":"Health Information Science","author":"D. Wei","year":"2012","unstructured":"Wei, D., Zhuang, W., Jiang, Q., Wei, Y.: A New Classification Method for Human Gene Splice Site Prediction. In: He, J., Liu, X., Krupinski, E.A., Xu, G. (eds.) HIS 2012. LNCS, vol.\u00a07231, pp. 121\u2013130. Springer, Heidelberg (2012)"},{"key":"4_CR2","doi-asserted-by":"crossref","unstructured":"Salekdeh, A., Wiese, K.: Improving splice-junctions classification employing a novel encoding schema and decision-tree. In: IEEE Congress on Evolutionary Computation, pp. 1302\u20131307 (2011)","DOI":"10.1109\/CEC.2011.5949766"},{"issue":"12","key":"4_CR3","doi-asserted-by":"publisher","first-page":"1390","DOI":"10.1016\/j.patrec.2006.01.013","volume":"27","author":"N. Loris","year":"2006","unstructured":"Loris, N., Lumini, A.: Identifying Splice-Junction Sequences by Hierarchical Multi classifier. Pattern Recognition Letters\u00a027(12), 1390\u20131396 (2006)","journal-title":"Pattern Recognition Letters"},{"key":"4_CR4","first-page":"114","volume":"4","author":"C. Nantasenamat","year":"2005","unstructured":"Nantasenamat, C., Naenna, T., Isarankura-Na-Ayudhya, T., Prachayasittikul, V.: Recognition of DNA Splice Junction Via Machine Learning Approaches. Experimental and Clinical Sciences International Online Journal for Advances in Science\u00a04, 114\u2013129 (2005)","journal-title":"Experimental and Clinical Sciences International Online Journal for Advances in Science"},{"issue":"1","key":"4_CR5","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1016\/S0010-4825(02)00057-4","volume":"33","author":"S. Ying-Fei","year":"2003","unstructured":"Ying-Fei, S., Xiao-Dan, F., Yan-Da, L.: Identifying Splicing Sites in Eukaryotic RNA: Support Vector Machine Approach. Computers in Biology and Medicine\u00a033(1), 17\u201329 (2003)","journal-title":"Computers in Biology and Medicine"},{"issue":"1","key":"4_CR6","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1016\/j.eswa.2005.09.052","volume":"30","author":"Z. Ya","year":"2006","unstructured":"Ya, Z., Chao-Hsien, C., Yixin, C., Hongyuan, Z., Xiang, J.: Splice Site Prediction Using Support Vector Machines With a Bayes Kernel. Expert Systems with Applications\u00a030(1), 73\u201381 (2006)","journal-title":"Expert Systems with Applications"},{"key":"4_CR7","doi-asserted-by":"crossref","unstructured":"Baten, A., Halgamuge, S., Chang, B.: Fast Splice Site Detection Using Information Content and Feature Reduction. BMC Bioinformatics\u00a08 (2008)","DOI":"10.1186\/1471-2105-8-241"},{"key":"4_CR8","doi-asserted-by":"crossref","unstructured":"Baten, A., Halgamuge, S., Chang, B., Jason, L.: Splice Site Identification Using Probabilistic Parameters and SVM Classification. BMC Bioinformatics\u00a07 (2006)","DOI":"10.1186\/1471-2105-7-S5-S15"},{"issue":"7","key":"4_CR9","doi-asserted-by":"publisher","first-page":"923","DOI":"10.1016\/j.biochi.2006.03.006","volume":"88","author":"J. Huang","year":"2006","unstructured":"Huang, J., Li, T., Chen, K., Wu, J.: An Approach Of Encoding for Prediction of Splice Sites using SVM. Biochimie\u00a088(7), 923\u2013929 (2006)","journal-title":"Biochimie"},{"issue":"13","key":"4_CR10","first-page":"2528","volume":"15","author":"C. Yifei","year":"2009","unstructured":"Yifei, C., Feng, L., Vanschoenwinkel, B., Manderick, B.: Splice Site Prediction using Support Vector Machines with Context-Sensitive Kernel Functions. Journal of Universal Computer Science\u00a015(13), 2528\u20132546 (2009)","journal-title":"Journal of Universal Computer Science"},{"issue":"19","key":"4_CR11","doi-asserted-by":"publisher","first-page":"4103","DOI":"10.1093\/nar\/gkf543","volume":"30","author":"C. Mathe","year":"2002","unstructured":"Mathe, C., Marie-France, S., Schiex, T., Rouze, P.: Current Methods of Gene Prediction, Their Strengths and Weakness. Nucleic Acids Research\u00a030(19), 4103\u20134117 (2002)","journal-title":"Nucleic Acids Research"},{"issue":"1","key":"4_CR12","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1007\/PL00006200","volume":"45","author":"B. Rogozin","year":"1997","unstructured":"Rogozin, B., Milanesi, L.: Analysis of Donor Splice Signals in Different Eukaryotic Organisms. J. Mol. Evol.\u00a045(1), 50\u201359 (1997)","journal-title":"J. Mol. Evol."},{"key":"4_CR13","doi-asserted-by":"publisher","first-page":"4709","DOI":"10.1093\/nar\/24.23.4709","volume":"24","author":"J. Kleffe","year":"1996","unstructured":"Kleffe, J., Hermann, K., Vahrson, W., Wittig, B., Brendel, V.: Logitlinear Models for the Prediction of Splice Sites in Plant Rre-mRNA Sequences. Nucleic Acids Res.\u00a024, 4709\u20134718 (1996)","journal-title":"Nucleic Acids Res."},{"key":"4_CR14","doi-asserted-by":"publisher","first-page":"3439","DOI":"10.1093\/nar\/24.17.3439","volume":"24","author":"S.M. Hebsgaard","year":"1996","unstructured":"Hebsgaard, S.M., Korning, P.G., Tolstrup, N., Engelbrecht, J., Rouz\u00e9, P., Brunak, S.: Splice Site Prediction in Arabidopsis Thaliana Pre-mRNA by Combining Local and Global Sequence Information. Nucleic Acids Res.\u00a024, 3439\u20133452 (1996)","journal-title":"Nucleic Acids Res."},{"key":"4_CR15","doi-asserted-by":"publisher","first-page":"3159","DOI":"10.1093\/nar\/25.15.3159","volume":"25","author":"N. Tolstrup","year":"1997","unstructured":"Tolstrup, N., Rouz\u00e9, P., Brunak, S.: A Branch Point Consensus from Arabidopsis\u00a0Found by Non-circular Analysis Allows for Better Prediction of Acceptor Sites. Nucleic Acids Res.\u00a025, 3159\u20133163 (1997)","journal-title":"Nucleic Acids Res."},{"key":"4_CR16","first-page":"232","volume-title":"First Annual International Conference on Computational Molecular Biology (RECOMB)","author":"M.G. Reese","year":"1997","unstructured":"Reese, M.G., Eeckman, F.H., Kulp, D., Haussler, D.: Improved Splice Site Detection in Genie. In: First Annual International Conference on Computational Molecular Biology (RECOMB), pp. 232\u2013240. ACM Press, New York (1997)"},{"issue":"4-6","key":"4_CR17","doi-asserted-by":"publisher","first-page":"380","DOI":"10.1016\/j.cplett.2004.12.062","volume":"402","author":"L. Bo","year":"2005","unstructured":"Bo, L., Mingshu, T., Kequan, D.: A 4D Representation of DNA Sequences and Its Application. Chemical Physics Letters\u00a0402(4-6), 380\u2013383 (2005)","journal-title":"Chemical Physics Letters"},{"key":"4_CR18","first-page":"611","volume":"68","author":"J. Nafiseh","year":"2012","unstructured":"Nafiseh, J., Iranmanesh, A.: A Novel Graphical and Numerical Representation for Analyzing DNA Sequences Based on Codons. MATCH Commun. Math. Comput. Chem.\u00a068, 611\u2013620 (2012)","journal-title":"MATCH Commun. Math. Comput. Chem."},{"key":"4_CR19","first-page":"809","volume":"67","author":"V. Aram","year":"2012","unstructured":"Aram, V., Iranmanesh, A.: 3D-Dynamic Representation of DNA Sequences. MATCH Commun. Math. Comput. Chem.\u00a067, 809\u2013816 (2012)","journal-title":"MATCH Commun. Math. Comput. Chem."},{"key":"4_CR20","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1016\/j.cplett.2005.03.056","volume":"407","author":"R. Chi","year":"2005","unstructured":"Chi, R., Kequan, D.: Novel 4D Numerical Representation of DNA Sequences. Chemical Physics Letters\u00a0407, 63\u201367 (2005)","journal-title":"Chemical Physics Letters"},{"key":"4_CR21","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1007\/s10910-006-9091-z","volume":"42","author":"B. Liao","year":"2007","unstructured":"Liao, B., Li, R., Zhu, W., Xiang, X.: On the Similarity of DNA Primary Sequences Based on 5D Representation. Journal of Mathematical Chemistry\u00a042, 47\u201357 (2007)","journal-title":"Journal of Mathematical Chemistry"},{"key":"4_CR22","doi-asserted-by":"publisher","first-page":"1666","DOI":"10.1021\/ci034271f","volume":"44","author":"B. Liao","year":"2004","unstructured":"Liao, B., Tian-ming, W.: Analysis of Similarity\/Dissimilarity of DNA Sequences Based on Nonoverlapping Triplets of Nucleotide Bases. Journal of Chemical Information and Modeling\u00a044, 1666\u20131670 (2004)","journal-title":"Journal of Chemical Information and Modeling"},{"issue":"3","key":"4_CR23","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1089\/cmb.1997.4.311","volume":"4","author":"M.G. Reese","year":"1997","unstructured":"Reese, M.G., Eeckman, F., Kupl, D., Haussler, D.: Improved Splice Site Detection in Genie. Journal of Computational Biology\u00a04(3), 311\u2013324 (1997)","journal-title":"Journal of Computational Biology"},{"issue":"2","key":"4_CR24","doi-asserted-by":"publisher","first-page":"131","DOI":"10.1109\/TCBB.2005.27","volume":"2","author":"J.C. Rajapakse","year":"2005","unstructured":"Rajapakse, J.C., Loi, S.H.: Markov Encoding for Detecting Signals in Genomic Sequences. IEEE\/ACM Transactions on Comutational Biology and Bioinformatics\u00a02(2), 131\u2013142 (2005)","journal-title":"IEEE\/ACM Transactions on Comutational Biology and Bioinformatics"},{"issue":"5","key":"4_CR25","doi-asserted-by":"publisher","first-page":"1185","DOI":"10.1093\/nar\/29.5.1185","volume":"29","author":"M. Pertea","year":"2001","unstructured":"Pertea, M., Lin, X., Salzberg, S.L.: GeneSplicer: A New Computational Method for Splice Site Prediction. Nucleic Acids Research\u00a029(5), 1185\u20131190 (2001)","journal-title":"Nucleic Acids Research"},{"issue":"1","key":"4_CR26","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1145\/1656274.1656278","volume":"11","author":"M. Hall","year":"2009","unstructured":"Hall, M., Eibe, F., Holmes, G., Pfahringer, B., Reutemann, P., Witten, I.H.: The WEKA Data Mining Software: An Update. SIGKDD Explorations\u00a011(1), 10\u201318 (2009)","journal-title":"SIGKDD Explorations"},{"key":"4_CR27","unstructured":"Fawcett, T.: ROC Graphs: Notes and Practical Considerations for Data Mining Researchers. Technical Report HPL -2003-2004, HP Laboratories, Palo Alto (2003)"},{"key":"4_CR28","doi-asserted-by":"crossref","unstructured":"Chih-Chung, C., Chih-Jen, L.: LIBSVM: A Library for Support Vector Machines. ACM Transactions on Intelligent Systems and Technology\u00a02(3) (2011)","DOI":"10.1145\/1961189.1961199"}],"container-title":["Lecture Notes in Computer Science","Database Systems for Advanced Applications"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-40270-8_4","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,16]],"date-time":"2019-05-16T18:08:06Z","timestamp":1558030086000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-40270-8_4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642402692","9783642402708"],"references-count":28,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-40270-8_4","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013]]}}}