{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,7]],"date-time":"2024-09-07T21:32:05Z","timestamp":1725744725533},"publisher-location":"Berlin, Heidelberg","reference-count":19,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642404528"},{"type":"electronic","value":"9783642404535"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-40453-5_23","type":"book-chapter","created":{"date-parts":[[2013,8,15]],"date-time":"2013-08-15T23:09:49Z","timestamp":1376608189000},"page":"300-312","source":"Crossref","is-referenced-by-count":2,"title":["Multiscale Identification of Topological Domains in Chromatin"],"prefix":"10.1007","author":[{"given":"Darya","family":"Filippova","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rob","family":"Patro","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Geet","family":"Duggal","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Carl","family":"Kingsford","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"6","key":"23_CR1","doi-asserted-by":"publisher","first-page":"1270","DOI":"10.1016\/j.cell.2013.02.001","volume":"152","author":"W.A. Bickmore","year":"2013","unstructured":"Bickmore, W.A., van Steensel, B.: Genome Architecture: domain organization of interphase chromosomes. Cell\u00a0152(6), 1270\u20131284 (2013)","journal-title":"Cell"},{"issue":"3","key":"23_CR2","doi-asserted-by":"publisher","first-page":"290","DOI":"10.1038\/nsmb.2474","volume":"20","author":"G. Cavalli","year":"2013","unstructured":"Cavalli, G., Misteli, T.: Functional implications of genome topology. Nature Structural & Molecular Biology\u00a020(3), 290\u2013299 (2013)","journal-title":"Nature Structural & Molecular Biology"},{"issue":"1","key":"23_CR3","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1101\/gad.179804.111","volume":"26","author":"E. Wit de","year":"2012","unstructured":"de Wit, E., de Laat, W.: A decade of 3C technologies: insights into nuclear organization.. Genes & Development\u00a026(1), 11\u201324 (2012)","journal-title":"Genes & Development"},{"issue":"7398","key":"23_CR4","doi-asserted-by":"publisher","first-page":"376","DOI":"10.1038\/nature11082","volume":"485","author":"J.R. Dixon","year":"2012","unstructured":"Dixon, J.R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J.S., Ren, B.: Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature\u00a0485(7398), 376\u2013380 (2012)","journal-title":"Nature"},{"issue":"1","key":"23_CR5","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1186\/1471-2105-13-276","volume":"13","author":"D. Filippova","year":"2012","unstructured":"Filippova, D., Gadani, A., Kingsford, C.: Coral: an integrated suite of visualizations for comparing clusterings. BMC Bioinformatics\u00a013(1), 276 (2012)","journal-title":"BMC Bioinformatics"},{"issue":"12","key":"23_CR6","doi-asserted-by":"publisher","first-page":"1109","DOI":"10.1038\/nbt.2049","volume":"29","author":"G. Fudenberg","year":"2011","unstructured":"Fudenberg, G., Getz, G., Meyerson, M., Mirny, L.A.: High order chromatin architecture shapes the landscape of chromosomal alterations in cancer. Nature Biotechnology\u00a029(12), 1109\u20131113 (2011)","journal-title":"Nature Biotechnology"},{"issue":"5","key":"23_CR7","doi-asserted-by":"publisher","first-page":"773","DOI":"10.1016\/j.molcel.2013.02.011","volume":"49","author":"J.H. Gibcus","year":"2013","unstructured":"Gibcus, J.H., Dekker, J.: The hierarchy of the 3D genome. Molecular Cell\u00a049(5), 773\u2013782 (2013)","journal-title":"Molecular Cell"},{"key":"23_CR8","unstructured":"Goldberg, A.V.: Finding a maximum density subgraph. Computer Science Division. University of California, Berkeley (1984)"},{"issue":"3","key":"23_CR9","doi-asserted-by":"publisher","first-page":"471","DOI":"10.1016\/j.molcel.2012.08.031","volume":"48","author":"C. Hou","year":"2012","unstructured":"Hou, C., Li, L., Qin, Z.S., Corces, V.G.: Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains. Molecular cell\u00a048(3), 471\u2013484 (2012)","journal-title":"Molecular cell"},{"issue":"6","key":"23_CR10","doi-asserted-by":"publisher","first-page":"1231","DOI":"10.1016\/j.cell.2006.12.048","volume":"128","author":"T.H. Kim","year":"2007","unstructured":"Kim, T.H., Abdullaev, Z.K., Smith, A.D., Ching, K.A., Loukinov, D.I., Green, R.D., Zhang, M.Q., Lobanenkov, V.V., Ren, B.: Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell\u00a0128(6), 1231\u20131245 (2007)","journal-title":"Cell"},{"key":"23_CR11","unstructured":"Kleinberg, J., Tardos, \u00c9.: Algorithm Design. Addison-Wesley, Boston (2005)"},{"issue":"6","key":"23_CR12","doi-asserted-by":"publisher","first-page":"735","DOI":"10.1007\/s10577-012-9309-9","volume":"20","author":"A.C. K\u00f6lbl","year":"2012","unstructured":"K\u00f6lbl, A.C., Weigl, D., Mulaw, M., Thormeyer, T., Bohlander, S.K., Cremer, T., Dietzel, S.: The radial nuclear positioning of genes correlates with features of megabase-sized chromatin domains.. Chromosome Research\u00a020(6), 735\u2013752 (2012)","journal-title":"Chromosome Research"},{"issue":"5950","key":"23_CR13","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1126\/science.1181369","volume":"326","author":"E. Lieberman-Aiden","year":"2009","unstructured":"Lieberman-Aiden, E., van Berkum, N.L., Williams, L., Imakaev, M., Ragoczy, T., Telling, A., Amit, I., Lajoie, B.R., Sabo, P.J., Dorschner, M.O., et al.: Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science\u00a0326(5950), 289\u2013293 (2009)","journal-title":"Science"},{"issue":"12","key":"23_CR14","doi-asserted-by":"publisher","first-page":"1196","DOI":"10.1038\/ni.2432","volume":"13","author":"Y.C. Lin","year":"2012","unstructured":"Lin, Y.C., Benner, C., Mansson, R., Heinz, S., Miyazaki, K., Miyazaki, M., Chandra, V., Bossen, C., Glass, C.K., Murre, C.: Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate. Nature Immunology\u00a013(12), 1196\u20131204 (2012)","journal-title":"Nature Immunology"},{"key":"23_CR15","doi-asserted-by":"publisher","first-page":"173","DOI":"10.1007\/978-3-540-45167-9_14","volume":"2777","author":"M. Meil\u0103","year":"2003","unstructured":"Meil\u0103, M.: Comparing clusterings by the variation of information. Learning Theory and Kernel Machines\u00a02777, 173\u2013187 (2003)","journal-title":"Learning Theory and Kernel Machines"},{"issue":"1","key":"23_CR16","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1016\/j.cosrev.2007.05.001","volume":"1","author":"S.E. Schaeffer","year":"2007","unstructured":"Schaeffer, S.E.: Graph clustering. Computer Science Review\u00a01(1), 27\u201364 (2007)","journal-title":"Computer Science Review"},{"key":"23_CR17","doi-asserted-by":"publisher","first-page":"116","DOI":"10.1038\/nature11243","volume":"488","author":"Y. Shen","year":"2012","unstructured":"Shen, Y., Yue, F., McCleary, D.F., Ye, Z., Edsall, L., Kuan, S., Wagner, U., Dixon, J., Lee, L., Lobanenkov, V.V., Ren, B.: A map of the cis-regulatory sequences in the mouse genome. Nature\u00a0488, 116\u2013120 (2012)","journal-title":"Nature"},{"issue":"2","key":"23_CR18","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1016\/j.gde.2012.12.009","volume":"23","author":"A. Tanay","year":"2013","unstructured":"Tanay, A., Cavalli, G.: Chromosomal domains: epigenetic contexts and functional implications of genomic compartmentalization. Current Opinion in Genetics & Development\u00a023(2), 197\u2013203 (2013)","journal-title":"Current Opinion in Genetics & Development"},{"issue":"11","key":"23_CR19","doi-asserted-by":"publisher","first-page":"1059","DOI":"10.1038\/ng.947","volume":"43","author":"E. Yaffe","year":"2011","unstructured":"Yaffe, E., Tanay, A.: Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nature Genetics\u00a043(11), 1059\u20131065 (2011)","journal-title":"Nature Genetics"}],"container-title":["Lecture Notes in Computer Science","Algorithms in Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-40453-5_23","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,16]],"date-time":"2019-05-16T13:16:46Z","timestamp":1558012606000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-40453-5_23"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642404528","9783642404535"],"references-count":19,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-40453-5_23","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2013]]}}}