{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,7]],"date-time":"2024-09-07T21:32:10Z","timestamp":1725744730246},"publisher-location":"Berlin, Heidelberg","reference-count":18,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642404528"},{"type":"electronic","value":"9783642404535"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-40453-5_7","type":"book-chapter","created":{"date-parts":[[2013,8,15]],"date-time":"2013-08-15T23:09:49Z","timestamp":1376608189000},"page":"70-84","source":"Crossref","is-referenced-by-count":4,"title":["Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing"],"prefix":"10.1007","author":[{"given":"Denisa","family":"Duma","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mary","family":"Wootters","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anna C.","family":"Gilbert","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hung Q.","family":"Ngo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Atri","family":"Rudra","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Matthew","family":"Alpert","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Timothy J.","family":"Close","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gianfranco","family":"Ciardo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stefano","family":"Lonardi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"9","key":"7_CR1","doi-asserted-by":"publisher","first-page":"1506","DOI":"10.1101\/gr.121715.111","volume":"21","author":"S. Alon","year":"2011","unstructured":"Alon, S., Vigneault, F., Eminaga, S., et al.: Barcoding bias in high-throughput multiplex sequencing of mirna. Genome Research\u00a021(9), 1506\u20131511 (2011)","journal-title":"Genome Research"},{"key":"7_CR2","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/978-3-642-20036-6_1","volume-title":"Research in Computational Molecular Biology","author":"A. Amir","year":"2011","unstructured":"Amir, A., Zuk, O.: Bacterial community reconstruction using compressed sensing. In: Bafna, V., Sahinalp, S.C. (eds.) RECOMB 2011. LNCS, vol.\u00a06577, pp. 1\u201315. Springer, Heidelberg (2011)"},{"issue":"12","key":"7_CR3","doi-asserted-by":"publisher","first-page":"2224","DOI":"10.1101\/gr.126599.111","volume":"21","author":"D. Earl","year":"2011","unstructured":"Earl, D., et al.: Assemblathon 1: A competitive assessment of de novo short read assembly methods. Genome Research\u00a021(12), 2224\u20132241 (2011)","journal-title":"Genome Research"},{"issue":"9","key":"7_CR4","doi-asserted-by":"publisher","first-page":"2152","DOI":"10.1101\/gr.1068603","volume":"13","author":"F.W. Engler","year":"2003","unstructured":"Engler, F.W., Hatfield, J., Nelson, W., Soderlund, C.A.: Locating sequence on FPC maps and selecting a minimal tiling path. Genome Research\u00a013(9), 2152\u20132163 (2003)","journal-title":"Genome Research"},{"issue":"7","key":"7_CR5","doi-asserted-by":"publisher","first-page":"1243","DOI":"10.1101\/gr.092957.109","volume":"19","author":"Y. Erlich","year":"2009","unstructured":"Erlich, Y., Chang, K., Gordon, A., et al.: DNA sudoku - harnessing high-throughput sequencing for multiplexed specimen analysis. Genome Research\u00a019(7), 1243\u20131253 (2009)","journal-title":"Genome Research"},{"issue":"2","key":"7_CR6","doi-asserted-by":"publisher","first-page":"706","DOI":"10.1109\/TIT.2009.2037043","volume":"56","author":"Y. Erlich","year":"2010","unstructured":"Erlich, Y., Gordon, A., Brand, M., et al.: Compressed genotyping. IEEE Transactions on Information Theory\u00a056(2), 706\u2013723 (2010)","journal-title":"IEEE Transactions on Information Theory"},{"issue":"13","key":"7_CR7","doi-asserted-by":"crossref","first-page":"i32","DOI":"10.1093\/bioinformatics\/btn173","volume":"24","author":"I. Hajirasouliha","year":"2008","unstructured":"Hajirasouliha, I., Hormozdiari, F., Sahinalp, S.C., Birol, I.: Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. Bioinformatics\u00a024(13), i32\u2013i40 (2008)","journal-title":"Bioinformatics"},{"key":"7_CR8","doi-asserted-by":"crossref","unstructured":"Langmead, B., Trapnell, C., Pop, M., Salzberg, S.L.: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology\u00a010(3), R25 (2009)","DOI":"10.1186\/gb-2009-10-3-r25"},{"key":"7_CR9","doi-asserted-by":"crossref","unstructured":"Lonardi, S., Duma, D., Alpert, M., et al.: Combinatorial pooling enables selective sequencing of the barley gene space. PLoS Comput. Biol.\u00a09(4), e1003010 (2013)","DOI":"10.1371\/journal.pcbi.1003010"},{"key":"7_CR10","unstructured":"Ngo, H.Q., Porat, E., Rudra, A.: Efficiently decodable compressed sensing by list-recoverable codes and recursion. In: STACS, pp. 230\u2013241 (2012)"},{"issue":"7","key":"7_CR11","doi-asserted-by":"publisher","first-page":"1254","DOI":"10.1101\/gr.088559.108","volume":"19","author":"S. Prabhu","year":"2009","unstructured":"Prabhu, S., Pe\u2019er, I.: Overlapping pools for high-throughput targeted resequencing. Genome Research\u00a019(7), 1254\u20131261 (2009)","journal-title":"Genome Research"},{"issue":"19","key":"7_CR12","doi-asserted-by":"crossref","first-page":"e179","DOI":"10.1093\/nar\/gkq675","volume":"38","author":"N. Shental","year":"2010","unstructured":"Shental, N., Amir, A., Zuk, O.: Identification of rare alleles and their carriers using compressed se(que)nsing. Nucleic Acids Research\u00a038(19), e179\u2013e179 (2010)","journal-title":"Nucleic Acids Research"},{"issue":"3","key":"7_CR13","doi-asserted-by":"publisher","first-page":"549","DOI":"10.1101\/gr.126953.111","volume":"22","author":"J.T. Simpson","year":"2012","unstructured":"Simpson, J.T., Durbin, R.: Efficient de novo assembly of large genomes using compressed data structures. Genome Research\u00a022(3), 549\u2013556 (2012)","journal-title":"Genome Research"},{"key":"7_CR14","unstructured":"The International Barley Genome Sequencing Consortium. A physical, genetic and functional sequence assembly of the barley genome. Nature (advance online publication October 2012) (in press)"},{"key":"7_CR15","doi-asserted-by":"crossref","unstructured":"Thierry-Mieg, N.: A new pooling strategy for high-throughput screening: the shifted transversal design. BMC Bioinformatics\u00a07(28) (2006)","DOI":"10.1186\/1471-2105-7-28"},{"key":"7_CR16","doi-asserted-by":"publisher","first-page":"4655","DOI":"10.1109\/TIT.2007.909108","volume":"53","author":"J.A. Tropp","year":"2007","unstructured":"Tropp, J.A., Gilbert, A.C.: Signal recovery from random measurements via orthogonal matching pursuit. IEEE Trans. Inform. Theory\u00a053, 4655\u20134666 (2007)","journal-title":"IEEE Trans. Inform. Theory"},{"issue":"3","key":"7_CR17","doi-asserted-by":"publisher","first-page":"572","DOI":"10.1016\/j.sigpro.2005.05.030","volume":"86","author":"J.A. Tropp","year":"2006","unstructured":"Tropp, J.A., Gilbert, A.C., Strauss, M.J.: Algorithms for simultaneous sparse approximation: part i: Greedy pursuit. Signal Process.\u00a086(3), 572\u2013588 (2006)","journal-title":"Signal Process."},{"issue":"5","key":"7_CR18","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1101\/gr.074492.107","volume":"8","author":"D. Zerbino","year":"2008","unstructured":"Zerbino, D., Birney, E.: Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Research\u00a08(5), 821\u2013829 (2008)","journal-title":"Genome Research"}],"container-title":["Lecture Notes in Computer Science","Algorithms in Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-40453-5_7","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,16]],"date-time":"2019-05-16T13:17:06Z","timestamp":1558012626000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-40453-5_7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642404528","9783642404535"],"references-count":18,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-40453-5_7","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2013]]}}}