{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,7]],"date-time":"2024-09-07T22:35:07Z","timestamp":1725748507180},"publisher-location":"Berlin, Heidelberg","reference-count":13,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642405631"},{"type":"electronic","value":"9783642405648"}],"license":[{"start":{"date-parts":[[2013,1,1]],"date-time":"2013-01-01T00:00:00Z","timestamp":1356998400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-40564-8_21","type":"book-chapter","created":{"date-parts":[[2013,9,12]],"date-time":"2013-09-12T11:21:30Z","timestamp":1378984890000},"page":"206-218","source":"Crossref","is-referenced-by-count":0,"title":["An ASP Application in Integrative Biology: Identification of Functional Gene Units"],"prefix":"10.1007","author":[{"given":"Philippe","family":"Bordron","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Damien","family":"Eveillard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alejandro","family":"Maass","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anne","family":"Siegel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sven","family":"Thiele","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"21_CR1","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1146\/annurev.genet.42.110807.091653","volume":"42","author":"E.P.C. Rocha","year":"2008","unstructured":"Rocha, E.P.C.: The organization of the bacterial genome. Annual Review of Genetics\u00a042, 211\u2013233 (2008)","journal-title":"Annual Review of Genetics"},{"key":"21_CR2","doi-asserted-by":"publisher","first-page":"4209","DOI":"10.1093\/bioinformatics\/bti711","volume":"21","author":"F. Boyer","year":"2005","unstructured":"Boyer, F., Morgat, A., Labarre, L., Pothier, J., Viari, A.: Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. Bioinformatics\u00a021, 4209\u20134215 (2005)","journal-title":"Bioinformatics"},{"key":"21_CR3","doi-asserted-by":"crossref","first-page":"e29496","DOI":"10.1371\/journal.pone.0029496","volume":"7","author":"H.H. Zhang","year":"2011","unstructured":"Zhang, H.H., Yin, Y.Y., Olman, V.V., Xu, Y.Y.: Genomic arrangement of regulons in bacterial genomes. PLoS ONE 7, e29496\u2013e29496 (2011)","journal-title":"PLoS ONE"},{"key":"21_CR4","doi-asserted-by":"publisher","first-page":"261","DOI":"10.1049\/iet-syb.2010.0070","volume":"5","author":"P. Bordron","year":"2011","unstructured":"Bordron, P., Eveillard, D., Rusu, I.: Integrated analysis of the gene neighbouring impact on bacterial metabolic networks. IET Systems Biology\u00a05, 261\u2013268 (2011)","journal-title":"IET Systems Biology"},{"key":"21_CR5","doi-asserted-by":"crossref","unstructured":"Baral, C.: Knowledge Representation, Reasoning and Declarative Problem Solving. Cambridge University Press (2003)","DOI":"10.1017\/CBO9780511543357"},{"key":"21_CR6","unstructured":"Gebser, M., Kaminski, R., Kaufmann, B., Ostrowski, M., Schaub, T., Thiele, S.: A user\u2019s guide to gringo, clasp, clingo, and iclingo (2010), \n                  \n                    http:\/\/potassco.sourceforge.net"},{"key":"21_CR7","unstructured":"Gebser, M., Kaufmann, B., Neumann, A., Schaub, T.: Conflict-driven answer set solving. In: Veloso, M. (ed.) Proceedings of the Twentieth International Joint Conference on Artificial Intelligence, IJCAI 2007, pp. 386\u2013392. AAAI Press\/The MIT Press (2007)"},{"key":"21_CR8","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"312","DOI":"10.1007\/978-3-642-02846-5_27","volume-title":"Logic Programming","author":"T. Schaub","year":"2009","unstructured":"Schaub, T., Thiele, S.: Metabolic network expansion with answer set programming. In: Hill, P.M., Warren, D.S. (eds.) ICLP 2009. LNCS, vol.\u00a05649, pp. 312\u2013326. Springer, Heidelberg (2009)"},{"key":"21_CR9","doi-asserted-by":"crossref","unstructured":"Fayruzov, T., Cock, M.D., Cornelis, C., Vermeir, D.: Modeling protein interaction networks with answer set programming. In: IEEE Int. Conf. on Bioinformatics and Biomedicine, BIBM 2009, pp. 99\u2013104 (2009)","DOI":"10.1109\/BIBM.2009.9"},{"key":"21_CR10","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1017\/S1471068411000287","volume":"11","author":"M. Durzinsky","year":"2011","unstructured":"Durzinsky, M., Marwan, W., Ostrowski, M., Schaub, T., Wagler, A.: Automatic network reconstruction using ASP. Theory and Practice of Logic Programming\u00a011, 749\u2013766 (2011)","journal-title":"Theory and Practice of Logic Programming"},{"key":"21_CR11","doi-asserted-by":"crossref","unstructured":"Papatheodorou, I., Ziehm, M., Wieser, D., Alic, N., Partridge, L., Thornton, J.M.: Using answer set programming to integrate rna expression with signalling pathway information to infer how mutations affect ageing. PLoS ONE 7, e50881 (2012)","DOI":"10.1371\/journal.pone.0050881"},{"key":"21_CR12","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1017\/S1471068411000329","volume":"11","author":"M. Gebser","year":"2011","unstructured":"Gebser, M., Kaminski, R., Schaub, T.: Complex optimization in answer set programming. Theory and Practice of Logic Programming\u00a011, 821\u2013839 (2011)","journal-title":"Theory and Practice of Logic Programming"},{"key":"21_CR13","doi-asserted-by":"publisher","first-page":"367","DOI":"10.1093\/bib\/bbn019","volume":"9","author":"R.W.W. Brouwer","year":"2008","unstructured":"Brouwer, R.W.W., Kuipers, O.P., van Hijum, S.A.F.T.: The relative value of operon predictions. Briefings in Bioinformatics\u00a09, 367\u2013375 (2008)","journal-title":"Briefings in Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Logic Programming and Nonmonotonic Reasoning"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-40564-8_21","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,20]],"date-time":"2019-05-20T01:52:56Z","timestamp":1558317176000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-40564-8_21"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642405631","9783642405648"],"references-count":13,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-40564-8_21","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2013]]}}}