{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T00:06:41Z","timestamp":1740096401262,"version":"3.37.3"},"publisher-location":"Berlin, Heidelberg","reference-count":22,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642450075"},{"type":"electronic","value":"9783642450082"}],"license":[{"start":{"date-parts":[[2013,1,1]],"date-time":"2013-01-01T00:00:00Z","timestamp":1356998400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-3-642-45008-2_8","type":"book-chapter","created":{"date-parts":[[2013,11,27]],"date-time":"2013-11-27T21:12:40Z","timestamp":1385586760000},"page":"96-107","source":"Crossref","is-referenced-by-count":2,"title":["An Efficient Biomechanical Cell Model to Simulate Large Multi-cellular Tissue Morphogenesis: Application to Cell Sorting Simulation on GPU"],"prefix":"10.1007","author":[{"given":"Anne","family":"Jeannin-Girardon","sequence":"first","affiliation":[]},{"given":"Pascal","family":"Ballet","sequence":"additional","affiliation":[]},{"given":"Vincent","family":"Rodin","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"8_CR1","unstructured":"Ballet, P., Tracqui, P.: Deformable virtual cell migration: biomechanical and multi-agent modeling of cell migration-agent modeling of cell migration. RSTI, TSI Series (Special issue \u201cModeling and simulation for post-genomics\u201d) 26(1-2\/2007) (2007)"},{"key":"8_CR2","doi-asserted-by":"publisher","first-page":"248702","DOI":"10.1103\/PhysRevLett.100.248702","volume":"100","author":"J.M. Belmonte","year":"2008","unstructured":"Belmonte, J.M., Thomas, G.L., Brunnet, L.G., de Almeida, R.M.C., Chat\u00e9, H.: Self-propelled particle model for cell-sorting phenomena. Physical Review Letters\u00a0100, 248702 (2008)","journal-title":"Physical Review Letters"},{"issue":"6","key":"8_CR3","doi-asserted-by":"publisher","first-page":"1075","DOI":"10.1016\/j.jbiomech.2013.01.015","volume":"46","author":"Y. Ch\u00e9lin","year":"2013","unstructured":"Ch\u00e9lin, Y., Azzag, K., Canadas, P., Averseng, J., Baghdiguian, S., Maurin, B.: Simulation of cellular packing in non-proliferative epithelia. Journal of Biomechanics\u00a046(6), 1075\u20131080 (2013)","journal-title":"Journal of Biomechanics"},{"key":"8_CR4","unstructured":"Cussat-Blanc, S., Luga, H., Duthen, Y.: From Single Cell to Simple Creature Morphology and Metabolism. In: Artificial Life XI, pp. 134\u2013141. MIT Press (2008)"},{"key":"8_CR5","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1007\/978-3-540-30501-9_2","volume-title":"Parallel and Distributed Computing: Applications and Technologies","author":"T. Da-Jun","year":"2004","unstructured":"Da-Jun, T., Tang, F., Lee, T., Sarda, D., Krishnan, A., Goryachev, A.: Parallel computing platform for the agent-based modeling of multicellular biological systems. In: Liew, K.-M., Shen, H., See, S., Cai, W. (eds.) PDCAT 2004. LNCS, vol.\u00a03320, pp. 5\u20138. Springer, Heidelberg (2004)"},{"key":"8_CR6","series-title":"Lecture Notes in Artificial Intelligence","doi-asserted-by":"publisher","first-page":"1034","DOI":"10.1007\/978-3-540-74913-4_104","volume-title":"Advances in Artificial Life","author":"M. Eyiyurekli","year":"2007","unstructured":"Eyiyurekli, M., Lelkes, P.I., Breen, D.E.: A computational system for investigating chemotaxis-based cell aggregation. In: Almeida e Costa, F., Rocha, L.M., Costa, E., Harvey, I., Coutinho, A. (eds.) ECAL 2007. LNCS (LNAI), vol.\u00a04648, pp. 1034\u20131049. Springer, Heidelberg (2007)"},{"issue":"7","key":"8_CR7","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1140\/epje\/i2011-11073-0","volume":"34","author":"V. Fleury","year":"2011","unstructured":"Fleury, V.: A change in boundary conditions induces a discontinuity of tissue flow in chicken embryos and the formation of the cephalic fold. The European Physical Journal E\u00a034(7), 1\u201313 (2011)","journal-title":"The European Physical Journal E"},{"issue":"13","key":"8_CR8","doi-asserted-by":"publisher","first-page":"2013","DOI":"10.1103\/PhysRevLett.69.2013","volume":"69","author":"F. Graner","year":"1992","unstructured":"Graner, F., Glazier, J.A.: Simulation of biological cell sorting using a two-dimensional extended potts model. Physical Review Letters\u00a069(13), 2013\u20132016 (1992)","journal-title":"Physical Review Letters"},{"issue":"20","key":"8_CR9","doi-asserted-by":"publisher","first-page":"2641","DOI":"10.1093\/bioinformatics\/btq437","volume":"26","author":"S. Hoehme","year":"2010","unstructured":"Hoehme, S., Drasdo, D.: A cell-based simulation software for multi-cellular systems. Bioinformatics\u00a026(20), 2641\u20132642 (2010)","journal-title":"Bioinformatics"},{"key":"8_CR10","doi-asserted-by":"crossref","unstructured":"Jeannin-Girardon, A., Ballet, P., Rodin, V.: A software architecture for multi-cellular system simulations on graphics processing units. Acta Biotheoretica, 1\u201311 (2013), \n                    \n                      http:\/\/dx.doi.org\/10.1007\/s10441-013-9187-3","DOI":"10.1007\/s10441-013-9187-3"},{"issue":"7","key":"8_CR11","doi-asserted-by":"publisher","first-page":"3879","DOI":"10.1073\/pnas.061535198","volume":"98","author":"A.F.M. Mar\u00e9e","year":"2001","unstructured":"Mar\u00e9e, A.F.M., Hogeweg, P.: How amoeboids self-organize into a fruiting body: Multicellular coordination in dictyostelium discoideum. Proceedings of the National Academy of Sciences\u00a098(7), 3879\u20133883 (2001)","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"3","key":"8_CR12","doi-asserted-by":"publisher","first-page":"1591","DOI":"10.1016\/S0006-3495(03)74969-8","volume":"84","author":"A. Mogilner","year":"2003","unstructured":"Mogilner, A., Oster, G.: Force generation by actin polymerization ii: The elastic ratchet and tethered filaments. Biophysical Journal\u00a084(3), 1591\u20131605 (2003)","journal-title":"Biophysical Journal"},{"issue":"5","key":"8_CR13","doi-asserted-by":"publisher","first-page":"352","DOI":"10.1049\/iet-syb:20080102","volume":"2","author":"I.I. Moraru","year":"2008","unstructured":"Moraru, I.I., Schaff, J.C., Slepchenko, B.M., Blinov, M.L., Morgan, F., Lakshminarayana, A., Gao, F., Li, Y., Loew, L.M.: Virtual Cell modelling and simulation software environment. IET Systems Biology\u00a02(5), 352\u2013362 (2008)","journal-title":"IET Systems Biology"},{"key":"8_CR14","first-page":"305","volume":"16","author":"S.J. Plimpton","year":"2005","unstructured":"Plimpton, S.J., Slepoy, A.: Microbial cell modeling via reacting diffusive particles. Journal Of Physics\u00a016, 305\u2013309 (2005)","journal-title":"Journal Of Physics"},{"issue":"3","key":"8_CR15","doi-asserted-by":"publisher","first-page":"334","DOI":"10.1093\/bib\/bbp073","volume":"11","author":"P. Richmond","year":"2010","unstructured":"Richmond, P., Walker, D., Coakley, S., Romano, D.: High performance cellular level agent-based simulation with flame for the gpu. Briefings in Bioinformatics\u00a011(3), 334\u2013347 (2010)","journal-title":"Briefings in Bioinformatics"},{"key":"8_CR16","doi-asserted-by":"publisher","first-page":"924","DOI":"10.1103\/PhysRevE.57.924","volume":"57","author":"J.P. Rieu","year":"1998","unstructured":"Rieu, J.P., Kataoka, N., Sawada, Y.: Quantitative analysis of cell motion during sorting in 2d aggregates of hydra cells. Physical Review E\u00a057, 924\u2013931 (1998)","journal-title":"Physical Review E"},{"key":"8_CR17","series-title":"Lecture Notes in Artificial Intelligence","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1007\/11553090_9","volume-title":"Advances in Artificial Life","author":"T. Rudge","year":"2005","unstructured":"Rudge, T., Haseloff, J.: A Computational Model of Cellular Morphogenesis in Plants. In: Capcarr\u00e8re, M.S., Freitas, A.A., Bentley, P.J., Johnson, C.G., Timmis, J. (eds.) ECAL 2005. LNCS (LNAI), vol.\u00a03630, pp. 78\u201387. Springer, Heidelberg (2005)"},{"key":"8_CR18","doi-asserted-by":"crossref","unstructured":"Steinberg, M.: Reconstruction of tissues by dissiciated cells. Science\u00a0141(3579) (1963)","DOI":"10.1126\/science.141.3579.401"},{"key":"8_CR19","unstructured":"Stoma, S., Chopard, J., Godin, C., Traas, J.: Using mechanics in the modelling of meristem morphogenesis. In: 5th International Workshop on Functional-Structural Plant Models, Napier, New Zealand, pp. 52, 1\u20134 (2007)"},{"issue":"1","key":"8_CR20","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1093\/bioinformatics\/15.1.72","volume":"15","author":"M. Tomita","year":"1999","unstructured":"Tomita, M., Hashimoto, K., Takahashi, K., Shimizu, T.S., Matsuzaki, Y., Miyoshi, F., Saito, K., Tanida, S., Yugi, K., Venter, J.C., III, C.A.H.: E-cell: software environment for whole-cell simulation. Bioinformatics 15(1), 72\u201384 (1999)","journal-title":"Bioinformatics"},{"issue":"4","key":"8_CR21","doi-asserted-by":"publisher","first-page":"450","DOI":"10.1093\/bib\/bbp010","volume":"10","author":"D.C. Walker","year":"2008","unstructured":"Walker, D.C., Southgate, J.: The virtual cell - a candidate coordinator for middle-out modelling of biological systems. Briefings in Bioinformatics\u00a010(4), 450\u2013461 (2008)","journal-title":"Briefings in Bioinformatics"},{"key":"8_CR22","doi-asserted-by":"crossref","unstructured":"Zhang, Y., Thomas, G.L., Swat, M., Shirinifard, A., Glazier, J.A.: Computer simulations of cell sorting due to differential adhesion. PLoS ONE 6(10) (2011)","DOI":"10.1371\/journal.pone.0024999"}],"container-title":["Lecture Notes in Computer Science","Theory and Practice of Natural Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-45008-2_8","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,24]],"date-time":"2019-05-24T17:59:17Z","timestamp":1558720757000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-45008-2_8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9783642450075","9783642450082"],"references-count":22,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-45008-2_8","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2013]]}}}