{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,28]],"date-time":"2025-03-28T04:24:31Z","timestamp":1743135871819,"version":"3.40.3"},"publisher-location":"Berlin, Heidelberg","reference-count":16,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642551949"},{"type":"electronic","value":"9783642551956"}],"license":[{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-3-642-55195-6_25","type":"book-chapter","created":{"date-parts":[[2014,5,7]],"date-time":"2014-05-07T14:55:32Z","timestamp":1399474532000},"page":"268-277","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["A Parallel, Distributed-Memory Framework for Comparative Motif Discovery"],"prefix":"10.1007","author":[{"given":"Dieter","family":"De Witte","sequence":"first","affiliation":[]},{"given":"Michiel","family":"Van Bel","sequence":"additional","affiliation":[]},{"given":"Pieter","family":"Audenaert","sequence":"additional","affiliation":[]},{"given":"Piet","family":"Demeester","sequence":"additional","affiliation":[]},{"given":"Bart","family":"Dhoedt","sequence":"additional","affiliation":[]},{"given":"Klaas","family":"Vandepoele","sequence":"additional","affiliation":[]},{"given":"Jan","family":"Fostier","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,5,8]]},"reference":[{"issue":"Suppl 7","key":"25_CR1","doi-asserted-by":"publisher","first-page":"S21","DOI":"10.1186\/1471-2105-8-S7-S21","volume":"8","author":"MK Das","year":"2007","unstructured":"Das, M.K., Dai, H.-K.: A survey of DNA motif finding algorithms. BMC Bioinform. 8(Suppl 7), S21 (2007)","journal-title":"BMC Bioinform."},{"issue":"5","key":"25_CR2","doi-asserted-by":"publisher","first-page":"739","DOI":"10.1101\/gr.6902","volume":"12","author":"M Blanchette","year":"2002","unstructured":"Blanchette, M., Tompa, M.: Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Res. 12(5), 739\u2013748 (2002)","journal-title":"Genome Res."},{"issue":"2","key":"25_CR3","doi-asserted-by":"publisher","first-page":"R18","DOI":"10.1186\/gb-2005-6-2-r18","volume":"6","author":"O Elemento","year":"2005","unstructured":"Elemento, O., Tavazoie, S.: Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach. Genome Biol. 6(2), R18 (2005)","journal-title":"Genome Biol."},{"issue":"17","key":"25_CR4","doi-asserted-by":"publisher","first-page":"1843","DOI":"10.1093\/bioinformatics\/btn348","volume":"24","author":"J Wu","year":"2008","unstructured":"Wu, J., Sieglaff, D.H., Gervin, J., Xie, X.S.: Discovering regulatory motifs in the Plasmodium genome using comparative genomics. Bioinformatics 24(17), 1843\u20131849 (2008)","journal-title":"Bioinformatics"},{"issue":"9","key":"25_CR5","doi-asserted-by":"publisher","first-page":"3053","DOI":"10.1073\/pnas.0813264106","volume":"106","author":"DH Sieglaff","year":"2009","unstructured":"Sieglaff, D.H., Dunn, W.A., Xie, X.S., Megy, K., Marinotti, O., James, A.A.: Comparative genomics allows the discovery of cis-regulatory elements in mosquitoes. Proc. Natl. Acad. Sci. 106(9), 3053\u20133058 (2009)","journal-title":"Proc. Natl. Acad. Sci."},{"key":"25_CR6","doi-asserted-by":"publisher","first-page":"208","DOI":"10.1186\/1471-2164-11-208","volume":"11","author":"L Kumar","year":"2010","unstructured":"Kumar, L., Breakspear, A., Kistler, C., Ma, L.J., Xie, X.: Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes. BMC Genomics 11, 208 (2010)","journal-title":"BMC Genomics"},{"issue":"12","key":"25_CR7","doi-asserted-by":"publisher","first-page":"R104","DOI":"10.1186\/gb-2005-6-12-r104","volume":"6","author":"L Ettwiller","year":"2005","unstructured":"Ettwiller, L., Paten, B., Souren, M., Loosli, F., Wittbrodt, J., Birney, E.: The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates. Genome Biol. 6(12), R104 (2005)","journal-title":"Genome Biol."},{"issue":"7031","key":"25_CR8","doi-asserted-by":"publisher","first-page":"338","DOI":"10.1038\/nature03441","volume":"434","author":"X Xie","year":"2005","unstructured":"Xie, X., Lu, J., Kulbokas, E.J., Golub, T.R., Mootha, V., Lindblad-Toh, K., Lander, E.S., Kellis, M.: Systematic discovery of regulatory motifs in human promoters and 3\u2019 UTRs by comparison of several mammals. Nature 434(7031), 338\u2013345 (2005)","journal-title":"Nature"},{"key":"25_CR9","doi-asserted-by":"publisher","first-page":"202","DOI":"10.1093\/nar\/gkp335","volume":"37","author":"TL Bailey","year":"2009","unstructured":"Bailey, T.L., Bod\u00e9n, M., Buske, F.A., Frith, M., Grant, C.E., Clementi, L., Ren, J., Li, W.W., Noble, W.S.: MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, 202\u2013208 (2009)","journal-title":"Nucleic Acids Res."},{"issue":"7167","key":"25_CR10","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1038\/nature06340","volume":"450","author":"A Stark","year":"2007","unstructured":"Stark, A., Lin, M.F., Kheradpour, P., Pedersen, J.S., Parts, L., Carlson, J.W., Crosby, M.A., Rasmussen, M.D., Roy, S., Deoras, A.N., et al.: Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 450(7167), 219\u2013232 (2007)","journal-title":"Nature"},{"key":"25_CR11","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511574931","volume-title":"Algorithms on Strings, Trees, And Sequences: Computer Science and Computational Biology","author":"D Gusfield","year":"1997","unstructured":"Gusfield, D.: Algorithms on Strings, Trees, And Sequences: Computer Science and Computational Biology. Cambridge University Press, Cambridge (1997)"},{"issue":"11","key":"25_CR12","doi-asserted-by":"publisher","first-page":"1035","DOI":"10.1002\/spe.535","volume":"33","author":"R Giegerich","year":"2003","unstructured":"Giegerich, R., Kurtz, S., Stoye, J.: Efficient implementation of lazy suffix trees. Softw. Pract. Exp. 33(11), 1035\u20131049 (2003)","journal-title":"Softw. Pract. Exp."},{"issue":"3\/4","key":"25_CR13","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1089\/106652700750050826","volume":"7","author":"L Marsan","year":"2000","unstructured":"Marsan, L., Sagot, M.F.: Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification. J. Comput. Biol. 7(3\/4), 345\u2013360 (2000)","journal-title":"J. Comput. Biol."},{"issue":"12","key":"25_CR14","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1093\/bioinformatics\/btp188","volume":"25","author":"T Marschall","year":"2009","unstructured":"Marschall, T., Rahmann, S.: Efficient exact motif discovery. Bioinformatics 25(12), 356\u2013364 (2009)","journal-title":"Bioinformatics"},{"issue":"2","key":"25_CR15","doi-asserted-by":"publisher","first-page":"590","DOI":"10.1104\/pp.111.189514","volume":"158","author":"M Van Bel","year":"2012","unstructured":"Van Bel, M., Proost, S., Wischnitzki, E., Movahedi, S., Scheerlinck, C., Van de Peer, Y., Vandepoele, K.: Dissecting Plant Genomes with the PLAZA comparative genomics platform. Plant Physiol. 158(2), 590\u2013600 (2012)","journal-title":"Plant Physiol."},{"key":"25_CR16","doi-asserted-by":"publisher","first-page":"3718","DOI":"10.1105\/tpc.109.071506","volume":"21","author":"S Proost","year":"2009","unstructured":"Proost, S., Van Bel, M., Sterk, L., Billiau, K., Van Parys, T., Van de Peer, Y., Vandepoele, K.: PLAZA: a comparative genomics resource to study gene and genome evolution in plants. Plant Cell 21, 3718\u20133731 (2009)","journal-title":"Plant Cell"}],"container-title":["Lecture Notes in Computer Science","Parallel Processing and Applied Mathematics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-55195-6_25","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,14]],"date-time":"2023-02-14T16:27:33Z","timestamp":1676392053000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-642-55195-6_25"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9783642551949","9783642551956"],"references-count":16,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-55195-6_25","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2014]]},"assertion":[{"value":"8 May 2014","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}