{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,28]],"date-time":"2025-03-28T01:14:25Z","timestamp":1743124465194,"version":"3.40.3"},"publisher-location":"Berlin, Heidelberg","reference-count":16,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642552236"},{"type":"electronic","value":"9783642552243"}],"license":[{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-3-642-55224-3_46","type":"book-chapter","created":{"date-parts":[[2014,5,5]],"date-time":"2014-05-05T20:44:02Z","timestamp":1399322642000},"page":"490-499","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Out-of-Core Solution of Eigenproblems for Macromolecular Simulations"],"prefix":"10.1007","author":[{"given":"Jos\u00e9 I.","family":"Aliaga","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Davor","family":"Davidovi\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Enrique S.","family":"Quintana-Ort\u00ed","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2014,5,6]]},"reference":[{"issue":"2","key":"46_CR1","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1016\/j.sbi.2009.03.001","volume":"19","author":"GS Ayton","year":"2009","unstructured":"Ayton, G.S., Voth, G.A.: Systematic multiscale simulation of membrane protein systems. Curr. Opin. Struct. Biology 19(2), 138\u201344 (2009)","journal-title":"Curr. Opin. Struct. Biology"},{"issue":"3","key":"46_CR2","doi-asserted-by":"publisher","first-page":"1463","DOI":"10.1021\/cr900095e","volume":"110","author":"I Bahar","year":"2010","unstructured":"Bahar, I., Lezon, T.R., Bakan, A., Shrivastava, I.H.: Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins. Chem. Rev. 110(3), 1463\u201397 (2010)","journal-title":"Chem. Rev."},{"issue":"1\u20133","key":"46_CR3","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1016\/j.theochem.2008.09.024","volume":"898","author":"L Skjaerven","year":"2009","unstructured":"Skjaerven, L., Hollup, S.M., Reuter, N.: Normal mode analysis for proteins. J. Mol. Struct. (Theochem) 898(1\u20133), 42\u201348 (2009)","journal-title":"J. Mol. Struct. (Theochem)"},{"issue":"20","key":"46_CR4","doi-asserted-by":"publisher","first-page":"2843","DOI":"10.1093\/bioinformatics\/btr497","volume":"27","author":"JR Lopez-Blanco","year":"2011","unstructured":"Lopez-Blanco, J.R., Garzon, J.I., Chacon, P.: iMOD: multipurpose normal mode analysis in internal coordinates. Bioinformatics 27(20), 2843\u201350 (2011)","journal-title":"Bioinformatics"},{"key":"46_CR5","volume-title":"Matrix Computations","author":"GH Golub","year":"1996","unstructured":"Golub, G.H., Loan, C.F.V.: Matrix Computations, 3rd edn. The Johns Hopkins University Press, Baltimore (1996)","edition":"3"},{"issue":"22","key":"46_CR6","doi-asserted-by":"publisher","first-page":"11279","DOI":"10.1016\/j.amc.2012.05.020","volume":"218","author":"J Aliaga","year":"2012","unstructured":"Aliaga, J., Bientinesi, P., Davidovi\u0107, D., Napoli, E.D., Igual, F., Quintana-Ort\u00ed, E.S.: Solving dense generalized eigenproblems on multi-threaded architectures. Appl. Math. Comput. 218(22), 11279\u201311289 (2012)","journal-title":"Appl. Math. Comput."},{"key":"46_CR7","unstructured":"MAGMA project home page. http:\/\/icl.cs.utk.edu\/magma\/"},{"key":"46_CR8","doi-asserted-by":"publisher","first-page":"275","DOI":"10.1016\/j.jcp.2013.03.032","volume":"246","author":"JR L\u00f3pez-Blanco","year":"2013","unstructured":"L\u00f3pez-Blanco, J.R., Reyes, R., Aliaga, J.I., Badia, R.M., Chac\u00f3n, P., Quintana, E.S.: Exploring large macromolecular functional motions on clusters of multicore processors. J. Comp. Phys. 246, 275\u2013288 (2013)","journal-title":"J. Comp. Phys."},{"key":"46_CR9","series-title":"DIMACS Series in Discrete Mathematics and Theoretical Computer Science","volume-title":"A Survey of Out-of-core Algorithms in Numerical Linear Algebra","author":"S Toledo","year":"1999","unstructured":"Toledo, S.: A Survey of Out-of-core Algorithms in Numerical Linear Algebra. DIMACS Series in Discrete Mathematics and Theoretical Computer Science. American Mathematical Society Press, Providence (1999)"},{"key":"46_CR10","unstructured":"Nakatsukasa, Y., Higham, N.J.: Stable and efficient spectral divide and conquer algorithms for the symmetric eigenvalue decomposition and the SVD. Technical Report 2012.52, Manchester Inst. Math. Sci., The University of Manchester (2012)"},{"key":"46_CR11","doi-asserted-by":"crossref","unstructured":"Davidovi\u0107, D., Quintana-Ort\u00ed, E.S.: Applying OOC techniques in the reduction to condensed form for very large symmetric eigenproblems on GPUs. In: 20th Euro. Conf. PDP 2012, pp. 442\u2013449 (2012)","DOI":"10.1109\/PDP.2012.54"},{"key":"46_CR12","doi-asserted-by":"publisher","first-page":"2700","DOI":"10.1137\/090774999","volume":"31","author":"Y Nakatsukasa","year":"2010","unstructured":"Nakatsukasa, Y., Bai, Z., Gygi, F.: Optimizing Halley\u2019s iteration for computing the matrix polar decomposition. SIAM J. Matrix Anal. Appl. 31, 2700\u20132720 (2010)","journal-title":"SIAM J. Matrix Anal. Appl."},{"key":"46_CR13","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.laa.2003.12.028","volume":"387","author":"IS Dhillon","year":"2004","unstructured":"Dhillon, I.S., Parlett, B.N.: Multiple representations to compute orthogonal eigenvectors of symmetric tridiagonal matrices. Linear Algebra Appl. 387, 1\u201328 (2004)","journal-title":"Linear Algebra Appl."},{"issue":"1","key":"46_CR14","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1137\/030601107","volume":"27","author":"P Bientinesi","year":"2005","unstructured":"Bientinesi, P., Dhillon, I.S., van de Geijn, R.: A parallel eigensolver for dense symmetric matrices based on multiple relatively robust representations. SIAM J. Sci. Comput. 27(1), 43\u201366 (2005)","journal-title":"SIAM J. Sci. Comput."},{"issue":"4","key":"46_CR15","doi-asserted-by":"publisher","first-page":"602","DOI":"10.1145\/365723.365736","volume":"26","author":"CH Bischof","year":"2000","unstructured":"Bischof, C.H., Lang, B., Sun, X.: Algorithm 807: the SBR toolbox\u2013software for successive band reduction. ACM Trans. Math. Soft. 26(4), 602\u2013616 (2000)","journal-title":"ACM Trans. Math. Soft."},{"issue":"4","key":"46_CR16","doi-asserted-by":"publisher","first-page":"25:1","DOI":"10.1145\/2331130.2331133","volume":"38","author":"G Quintana-Ort\u00ed","year":"2012","unstructured":"Quintana-Ort\u00ed, G., Igual, F.D., Marqu\u00e9s, M., Quintana-Ort\u00ed, E.S., de Geijn, R.A.V.: A run-time system for programming out-of-core matrix algorithms-by-tiles on multithreaded architectures. ACM Trans. Math. Softw. 38(4), 25:1\u201325:25 (2012)","journal-title":"ACM Trans. Math. Softw."}],"container-title":["Lecture Notes in Computer Science","Parallel Processing and Applied Mathematics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-55224-3_46","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,28]],"date-time":"2023-01-28T07:42:13Z","timestamp":1674891733000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-642-55224-3_46"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9783642552236","9783642552243"],"references-count":16,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-55224-3_46","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2014]]},"assertion":[{"value":"6 May 2014","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}