{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,6]],"date-time":"2024-09-06T04:31:03Z","timestamp":1725597063505},"publisher-location":"Berlin, Heidelberg","reference-count":24,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540632429"},{"type":"electronic","value":"9783642583605"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[1999]]},"DOI":"10.1007\/978-3-642-58360-5_28","type":"book-chapter","created":{"date-parts":[[2011,7,22]],"date-time":"2011-07-22T09:25:05Z","timestamp":1311326705000},"page":"472-482","source":"Crossref","is-referenced-by-count":3,"title":["Avoiding Algorithmic Obfuscation in a Message-Driven Parallel MD Code"],"prefix":"10.1007","author":[{"given":"James C.","family":"Phillips","sequence":"first","affiliation":[]},{"given":"Robert","family":"Brunner","sequence":"additional","affiliation":[]},{"given":"Aritomo","family":"Shinozaki","sequence":"additional","affiliation":[]},{"given":"Milind","family":"Bhandarkar","sequence":"additional","affiliation":[]},{"given":"Neal","family":"Krawetz","sequence":"additional","affiliation":[]},{"given":"Attila","family":"Gursoy","sequence":"additional","affiliation":[]},{"given":"Laxmikant","family":"Kal\u00e9","sequence":"additional","affiliation":[]},{"given":"Robert D.","family":"Skeel","sequence":"additional","affiliation":[]},{"given":"Klaus","family":"Schulten","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"28_CR1","volume-title":"In Proc. AFIPS spring computer conf","author":"GM Amdahl","year":"1967","unstructured":"Amdahl, G. M.: Validity of the single processor approach to achieve large scale computing capabilities. In Proc. AFIPS spring computer conf. vol. 30. AFIPS Press, Reston, Virginia, 1967."},{"key":"28_CR2","volume-title":"Computer Simulation of Liquids","author":"MP Allen","year":"1987","unstructured":"Allen, M. P., Tildesley, D. J.: Computer Simulation of Liquids. Oxford University Press, New York, 1987."},{"key":"28_CR3","doi-asserted-by":"crossref","DOI":"10.1002\/9780470141205","volume-title":"Advances in Chemical Physics","author":"CL Brooks III","year":"1988","unstructured":"Brooks III, C. L., Karplus, M., Pettitt, B. M.: Proteins: A Theoretical Perspective of Dynamics, Structure and Thermodynamics. Advances in Chemical Physics, vol. LXXI. John Wiley & Sons, New York, 1988."},{"key":"28_CR4","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9781139167864","volume-title":"Dynamics of Proteins and Nucleic Acids","author":"JA McCammon","year":"1987","unstructured":"McCammon, J. A., Harvey, S. C: Dynamics of Proteins and Nucleic Acids. Cambridge University Press, Cambridge, 1987."},{"key":"28_CR5","volume-title":"Highly Parallel Computing","author":"GS Almasi","year":"1994","unstructured":"Almasi, G. S., Gottlieb, A.: Highly Parallel Computing. 2nd edn. Benjamin\/Cummings, Redwood City, California, 1994.","edition":"2"},{"key":"28_CR6","unstructured":"Theoretical Biophysics Group, http:\/\/www.ks.uiuc.edu\/."},{"key":"28_CR7","doi-asserted-by":"publisher","first-page":"251","DOI":"10.1177\/109434209601000401","volume":"10","author":"M Nelson","year":"1996","unstructured":"Nelson, M., Humphrey, W., Gursoy, A., Dalke, A., Kal\u00e9, L., Skeel, R. D., Schulten, K.: NAMD \u2014 A parallel, object-oriented molecular dynamics program. J. Supercomputing App. 10 (1996) 251\u2013268.","journal-title":"J. Supercomputing App"},{"key":"28_CR8","volume-title":"In Proceedings of Supercomputing \u201894","author":"M Lin","year":"1994","unstructured":"Lin, M., Hsieh, J., Du, D. H. C., Thomas, J. P., MacDonald, J. A.: Distributed network computing over local ATM networks. In Proceedings of Supercomputing \u201894. IEEE Computer Society Press, Los Alamitos, California, 1994."},{"key":"28_CR9","doi-asserted-by":"publisher","first-page":"325","DOI":"10.1016\/0021-9991(87)90140-9","volume":"73","author":"L Greengard","year":"1987","unstructured":"Greengard, L., Rokhlin, V.: A fast algorithm for particle simulation. J. Comp. Phys. 73 (1987) 325\u2013348.","journal-title":"J. Comp. Phys"},{"key":"28_CR10","unstructured":"Rankin, W., Board, J.: A portable distributed implementation of the parallel multipole tree algorithm. IEEE Symposium on High Performance Distributed Computing. Duke University Technical Report 95\u2013002."},{"key":"28_CR11","doi-asserted-by":"crossref","DOI":"10.7551\/mitpress\/5712.001.0001","volume-title":"PVM: Parallel Virtual Machine: A Users\u2019 Guide and Tutorial for Networked Parallel Computing","author":"A Geist","year":"1994","unstructured":"Geist, A., Beguelin, A., Dongarra, J., Jiang, W., Manchek, R., Sunderam, V.: PVM: Parallel Virtual Machine: A Users\u2019 Guide and Tutorial for Networked Parallel Computing. MIT Press, Cambridge, Massachusetts, 1994."},{"key":"28_CR12","volume-title":"MPI: The Complete Reference","author":"M Snir","year":"1995","unstructured":"Snir, M., Otto, S., Huss-Lederman, S., Walker, D., Dongarra, J.: MPI: The Complete Reference. MIT Press, Cambridge, Massachusetts, 1995."},{"key":"28_CR13","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/0263-7855(96)00018-5","volume":"14","author":"WF Humphrey","year":"1996","unstructured":"Humphrey, W. F., Dalke, A., Schulten, K.: VMD \u2014 Visual molecular dynamics. J. Mol. Graphics. 14 (1996) 33\u201338.","journal-title":"J. Mol. Graphics"},{"key":"28_CR14","first-page":"690","volume":"8","author":"SW Haney","year":"1994","unstructured":"Haney, S. W.: Is C++ fast enough for scientific computing? Computers in Physics. 8 (1994) 690\u2013694.","journal-title":"Is C++ fast enough for scientific computing? Computers in Physics"},{"key":"28_CR15","volume-title":"In Proceedings of the scalable high performance computing conference","author":"T Clark","year":"1994","unstructured":"Clark, T., Hanxleden, R., McCammon, J., Scott, L.: Parallelizing molecular dynamics using spatial decomposition. In Proceedings of the scalable high performance computing conference, May 23\u201325, 1994, Knoxville, Tennessee. IEEE Computer Society Press, Los Alamitos, California, 1994."},{"key":"28_CR16","doi-asserted-by":"crossref","unstructured":"Plimpton, S., Hendrickson, B.: A New Parallel Method for Molecular Dynamics Simulation of Macromolecular Systems. 1994. Technical Report SAND94-1862. Sandia National Laboratories.","DOI":"10.2172\/10181391"},{"key":"28_CR17","volume-title":"Computer Simulation Using Particles","author":"RW Hockney","year":"1981","unstructured":"Hockney, R. W., Eastwood, J. W.: Computer Simulation Using Particles. McGraw-Hill, New York, 1981."},{"key":"28_CR18","volume-title":"In Proceedings of the international conference on parallel processing vol. II","author":"LV Kal\u00e9","year":"1990","unstructured":"Kal\u00e9, L. V.: The Chare Kernel parallel programming language and system. In Proceedings of the international conference on parallel processing vol. II. CRC Press, Boca Raton, Florida, 1990."},{"key":"28_CR19","volume-title":"In Proceedings of the Conference on Object Oriented Programming Systems","author":"L Kal\u00e9","year":"1993","unstructured":"Kal\u00e9, L., Krishnan, S.: Charm++: A Portable Concurrent Object Oriented System Based on C++. In Proceedings of the Conference on Object Oriented Programming Systems, Languages and Applications. A. Paepcke, editor. ACM Press, New York, N.Y., 1993."},{"key":"28_CR20","volume-title":"In Proceedings of the 10th international parallel processing symposium","author":"LV Kal\u00e9","year":"1996","unstructured":"Kal\u00e9, L. V., Bhandarkar, M., Jagathesan, N., Krishnan, S., Yelon, J.: Converse: An interoperable framework for parallel programming. In Proceedings of the 10th international parallel processing symposium. IEEE Computer Society Press, Los Alamitos, California, 1996."},{"key":"28_CR21","volume-title":"In Proceedings of the 10th international workshop on languages and compilers for parallel computing","author":"LV Kal\u00e9","year":"1998","unstructured":"Kal\u00e9, L. V., Bhandarkar, M., Brunner, R., Krawetz, N., Phillips, J., Shinozaki, A.: NAMD: A case study in multilingual parallel programming. In Proceedings of the 10th international workshop on languages and compilers for parallel computing. Springer-Verlag, Berlin, 1998."},{"key":"28_CR22","volume-title":"In Proceedings of the second international europar conference","author":"LV Kal\u00e9","year":"1996","unstructured":"Kal\u00e9, L. V., Bhandarkar, M.: Structured Dagger: A coordination language for message-driven programming. In Proceedings of the second international europar conference. Lecture Notes in Computer Science, vol. 1123-1124. SpringerVerlag, Berlin, 1996."},{"key":"28_CR23","volume-title":"Tcl and the Tk Toolkit","author":"J Ousterhout","year":"1994","unstructured":"Ousterhout, J.: Tcl and the Tk Toolkit. Addison-Wesley, Reading, Massachusetts, 1994."},{"key":"28_CR24","volume-title":"Internet Programming With Python","author":"A Watters","year":"1996","unstructured":"Watters, A., Rossum, G. V., Ahlstrom, J. C: Internet Programming With Python. M & T Books, Sebastopol, California, 1996."}],"container-title":["Lecture Notes in Computational Science and Engineering","Computational Molecular Dynamics: Challenges, Methods, Ideas"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-58360-5_28.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,11,23]],"date-time":"2020-11-23T22:33:19Z","timestamp":1606170799000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-58360-5_28"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[1999]]},"ISBN":["9783540632429","9783642583605"],"references-count":24,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-58360-5_28","relation":{},"ISSN":["1439-7358"],"issn-type":[{"type":"print","value":"1439-7358"}],"subject":[],"published":{"date-parts":[[1999]]}}}