{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,9]],"date-time":"2024-09-09T11:32:01Z","timestamp":1725881521647},"publisher-location":"Singapore","reference-count":25,"publisher":"Springer Singapore","isbn-type":[{"type":"print","value":"9789811031557"},{"type":"electronic","value":"9789811031564"}],"license":[{"start":{"date-parts":[[2017,1,1]],"date-time":"2017-01-01T00:00:00Z","timestamp":1483228800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017]]},"DOI":"10.1007\/978-981-10-3156-4_11","type":"book-chapter","created":{"date-parts":[[2017,3,2]],"date-time":"2017-03-02T02:13:45Z","timestamp":1488420825000},"page":"109-118","source":"Crossref","is-referenced-by-count":4,"title":["Gene Ontology Based Function Prediction of Human Protein Using Protein Sequence and Neighborhood Property of PPI Network"],"prefix":"10.1007","author":[{"given":"Sovan","family":"Saha","sequence":"first","affiliation":[]},{"given":"Piyali","family":"Chatterjee","sequence":"additional","affiliation":[]},{"given":"Subhadip","family":"Basu","sequence":"additional","affiliation":[]},{"given":"Mita","family":"Nasipuri","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2017,3,3]]},"reference":[{"key":"11_CR1","doi-asserted-by":"crossref","first-page":"1257","DOI":"10.1038\/82360","volume":"18","author":"B Schwikowski","year":"2000","unstructured":"B. Schwikowski, P. Uetz, S. Fields, A network of protein-protein interactions in yeast. Nat. Biotechnol. 18, 1257\u20131261 (2000)","journal-title":"Nat. Biotechnol."},{"key":"11_CR2","doi-asserted-by":"crossref","unstructured":"H. Hishigaki, K. Nakai, T. Ono, A. Tanigami, T. Takagi, Assessment of prediction accuracy of protein function from protein-protein interaction data. Yeast (Chichester, England) 18, 523\u201331 (2001)","DOI":"10.1002\/yea.706"},{"key":"11_CR3","unstructured":"J. Chen, W. Hsu, M.L. Lee, S.K. Ng, Labeling network motifs in protein interactomes for protein function prediction, in IEEE 23rd International Conference on Data Engineering (2007), pp. 546\u2013555"},{"key":"11_CR4","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1038\/nbt825","volume":"21","author":"A Vazquez","year":"2003","unstructured":"A. Vazquez, A. Flammini, A. Maritan, A. Vespignani, Global protein function prediction from protein-protein interaction networks. Nat. Biotechnol. 21, 697\u2013700 (2003)","journal-title":"Nat. Biotechnol."},{"key":"11_CR5","doi-asserted-by":"crossref","first-page":"2888","DOI":"10.1073\/pnas.0307326101","volume":"101","author":"U Karaoz","year":"2004","unstructured":"U. Karaoz, T.M. Murali, S. Letovsky, Y. Zheng, C. Ding, C.R. Cantor, S. Kasif, Whole-genome annotation by using evidence integration in functional-linkage networks. Proc. Natl. Acad. Sci. U. S. A. 101, 2888\u20132893 (2004)","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"11_CR6","doi-asserted-by":"crossref","first-page":"i302","DOI":"10.1093\/bioinformatics\/bti1054","volume":"21","author":"E Nabieva","year":"2005","unstructured":"E. Nabieva, K. Jim, A. Agarwal, B. Chazelle, M. Singh, Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. Bioinform. 21, i302\u2013i310 (2005)","journal-title":"Bioinform."},{"key":"11_CR7","doi-asserted-by":"crossref","unstructured":"M. Deng, S. Mehta, F. Sun, T. Chen, Inferring domain\u2013domain interactions from protein\u2013protein interactions. Genome Res. 1540\u20131548 (2002)","DOI":"10.1101\/gr.153002"},{"key":"11_CR8","doi-asserted-by":"crossref","first-page":"i197","DOI":"10.1093\/bioinformatics\/btg1026","volume":"19","author":"S Letovsky","year":"2003","unstructured":"S. Letovsky, S. Kasif, Predicting protein function from protein\/protein interaction data: a probabilistic approach. Bioinform. 19, i197\u2013i204 (2003)","journal-title":"Bioinform."},{"key":"11_CR9","doi-asserted-by":"crossref","unstructured":"D.D. Wu, An efficient approach to detect a protein community from a seed, in IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (2005), pp. 1\u20137","DOI":"10.1109\/CIBCB.2005.1594909"},{"key":"11_CR10","doi-asserted-by":"crossref","first-page":"12579","DOI":"10.1073\/pnas.2132527100","volume":"100","author":"MP Samanta","year":"2003","unstructured":"M.P. Samanta, S. Liang, Predicting protein functions from redundancies in large-scale protein interaction networks. Proc. Natl. Acad. Sci. U. S. A. 100, 12579\u201312583 (2003)","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"11_CR11","doi-asserted-by":"crossref","first-page":"364","DOI":"10.1093\/bioinformatics\/bti021","volume":"21","author":"V Arnau","year":"2005","unstructured":"V. Arnau, S. Mars, I. Mar\u00edn, Iterative cluster analysis of protein interaction data. Bioinform. 21, 364\u2013378 (2005)","journal-title":"Bioinform."},{"key":"11_CR12","first-page":"1","volume":"27","author":"GD Bader","year":"2003","unstructured":"G.D. Bader, C.W.V. Hogue, An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinform. 27, 1\u201327 (2003)","journal-title":"BMC Bioinform."},{"key":"11_CR13","doi-asserted-by":"publisher","unstructured":"M. Altaf-Ul-Amin, Y. Shinbo, K. Mihara, K. Kurokawa, S. Kanaya, Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinform. 7, doi: 10.1186\/1471-2105-7-207 (2006)","DOI":"10.1186\/1471-2105-7-207"},{"key":"11_CR14","doi-asserted-by":"crossref","first-page":"12123","DOI":"10.1073\/pnas.2032324100","volume":"100","author":"V Spirin","year":"2003","unstructured":"V. Spirin, L.A. Mirny, Protein complexes and functional modules in molecular networks. Proc. Natl. Acad. Sci. U. S. A. 100, 12123\u201312128 (2003)","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"11_CR15","doi-asserted-by":"crossref","first-page":"3013","DOI":"10.1093\/bioinformatics\/bth351","volume":"20","author":"AD King","year":"2004","unstructured":"A.D. King, N. Przulj, I. Jurisica, Protein complex prediction via cost-based clustering. Bioinform. 20, 3013\u20133020 (2004)","journal-title":"Bioinform."},{"key":"11_CR16","doi-asserted-by":"crossref","first-page":"1170","DOI":"10.1101\/gr.2203804","volume":"14","author":"S Asthana","year":"2004","unstructured":"S. Asthana, O.D. King, F.D. Gibbons, F.P. Roth, Predicting protein complex membership using probabilistic network reliability. Genome Res. 14, 1170\u20131175 (2004)","journal-title":"Genome Res."},{"key":"11_CR17","doi-asserted-by":"publisher","DOI":"10.2478\/s11658-014-0221-5","author":"S Saha","year":"2014","unstructured":"S. Saha, P. Chatterjee, S. Basu, M. Kundu, M. Nasipuri, Funpred-1: protein function prediction from a protein interaction network using neighborhood analysis cell. Mol. Biol. Lett. (2014). doi: 10.2478\/s11658-014-0221-5","journal-title":"Mol. Biol. Lett."},{"key":"11_CR18","doi-asserted-by":"crossref","first-page":"2137","DOI":"10.1093\/nar\/gkl219","volume":"34","author":"X Wu","year":"2006","unstructured":"X. Wu, L. Zhu, J. Guo, D.Y. Zhang, K. Lin, Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations. Nucleic Acids Res. 34, 2137\u20132150 (2006)","journal-title":"Nucleic Acids Res."},{"key":"11_CR19","doi-asserted-by":"publisher","unstructured":"S. Moosavi, M. Rahgozar, A. Rahimi, Protein function prediction using neighbor relativity in protein-protein interaction network. Comput. Biol. Chem. 43, doi: 10.1016\/j.compbiolchem.2012.12.003 (2013)","DOI":"10.1016\/j.compbiolchem.2012.12.003"},{"key":"11_CR20","first-page":"55","volume":"24","author":"S Saha","year":"2014","unstructured":"S. Saha, P. Chatterjee, Protein function prediction from protein interaction network using physico-chemical properties of amino acid. Int. J. Pharm. Bio. Sci. 24, 55\u201365 (2014)","journal-title":"Int. J. Pharm. Bio. Sci."},{"key":"11_CR21","doi-asserted-by":"publisher","unstructured":"W. Peng, J. Wang, W. Wang, Q. Liu, F.X. Wu, Y. Pan, Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks. BMC Syst. Biol. 6, doi: 10.1186\/1752-0509-6-87 (2012)","DOI":"10.1186\/1752-0509-6-87"},{"key":"11_CR22","doi-asserted-by":"crossref","unstructured":"S. Saha, P. Chatterjee, S. Basu, M. Kundu, M. Nasipuri, Improving prediction of protein function from protein interaction network using intelligent neighborhood approach, in International Conference on Communications, Devices and Intelligent Systems (IEEE, 2012), pp. 604\u2013607","DOI":"10.1109\/CODIS.2012.6422270"},{"key":"11_CR23","doi-asserted-by":"crossref","first-page":"1623","DOI":"10.1093\/bioinformatics\/btl145","volume":"22","author":"HN Chua","year":"2006","unstructured":"H.N. Chua, W.K. Sung, L. Wong, Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinform. 22, 1623\u20131630 (2006)","journal-title":"Bioinform."},{"key":"11_CR24","doi-asserted-by":"crossref","first-page":"2191","DOI":"10.1007\/s00894-011-1102-8","volume":"17","author":"P Chatterjee","year":"2011","unstructured":"P. Chatterjee, S. Basu, M. Kundu, M. Nasipuri, D. Plewczynski, PSP_MCSVM: brainstorming consensus prediction of protein secondarystructures using two-stage multiclass support vector machines. J. Mol. Model. 17, 2191\u20132201 (2011)","journal-title":"J. Mol. Model."},{"key":"11_CR25","doi-asserted-by":"publisher","unstructured":"P. Chatterjee, S. Basu, J. Zubek, M. Kundu, M. Nasipuri, D. Plewczynski, PDP-CON: prediction of domain\/linker residues in protein sequences using a consensus approach. J. Mol. Model. doi: 10.1007\/s00894-016-2933-0 (2016)","DOI":"10.1007\/s00894-016-2933-0"}],"container-title":["Advances in Intelligent Systems and Computing","Proceedings of the 5th International Conference on Frontiers in Intelligent Computing: Theory and Applications"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-981-10-3156-4_11","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,6,25]],"date-time":"2017-06-25T07:43:18Z","timestamp":1498376598000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-981-10-3156-4_11"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017]]},"ISBN":["9789811031557","9789811031564"],"references-count":25,"URL":"https:\/\/doi.org\/10.1007\/978-981-10-3156-4_11","relation":{},"ISSN":["2194-5357","2194-5365"],"issn-type":[{"type":"print","value":"2194-5357"},{"type":"electronic","value":"2194-5365"}],"subject":[],"published":{"date-parts":[[2017]]}}}