{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,23]],"date-time":"2024-09-23T03:47:52Z","timestamp":1727063272441},"reference-count":28,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2002,6,1]],"date-time":"2002-06-01T00:00:00Z","timestamp":1022889600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["New Gener Comput"],"published-print":{"date-parts":[[2002,6]]},"DOI":"10.1007\/bf03037578","type":"journal-article","created":{"date-parts":[[2009,4,24]],"date-time":"2009-04-24T23:40:02Z","timestamp":1240616402000},"page":"187-213","source":"Crossref","is-referenced-by-count":9,"title":["The evolution of stochastic regular motifs for protein sequences"],"prefix":"10.1007","volume":"20","author":[{"given":"Brian J.","family":"Ross","sequence":"first","affiliation":[]}],"member":"297","reference":[{"key":"BF03037578_CR1","doi-asserted-by":"crossref","unstructured":"Abramson, H. and Dahl, V.,Logic grammars, Springer-Verlag, 1989.","DOI":"10.1007\/978-1-4612-3640-5"},{"key":"BF03037578_CR2","doi-asserted-by":"crossref","first-page":"361","DOI":"10.1007\/BF03037183","volume":"11","author":"S. Arikawa","year":"1993","unstructured":"Arikawa, S., Miyano, S., Shinohara, A., Kuhara, S., Mukouchi, Y. and Shinohara, T., \u201cA Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns\u201d,New Generation Computing, 11, pp. 361\u2013375, 1993.","journal-title":"New Generation Computing"},{"key":"BF03037578_CR3","unstructured":"Baldi, P. and Brunak, S.,Bioinformatics: the Machine Learning Approach, MIT Press, 1998."},{"key":"BF03037578_CR4","doi-asserted-by":"crossref","unstructured":"Banzhaf, W., Nordin, P., Keller, R.E. and Francone, F.D.,Genetic Programming: An Introduction, Morgan Kaufman, 1998.","DOI":"10.1007\/BFb0055923"},{"key":"BF03037578_CR5","doi-asserted-by":"crossref","first-page":"366","DOI":"10.1016\/S0959-440X(96)80057-1","volume":"6","author":"P. Bork","year":"1996","unstructured":"Bork, P. and Koonin, E. V., \u201cProtein Sequence Motifs\u201d,Current Opinion in Structural Biology, 6, pp. 366\u2013376, 1996.","journal-title":"Current Opinion in Structural Biology"},{"issue":"2","key":"BF03037578_CR6","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1089\/cmb.1998.5.279","volume":"5","author":"A. Brazma","year":"1998","unstructured":"Brazma, A., Jonassen, I., Eidhammer, I. and Gilbert, D., \u201cApproaches to the Automatic Discovery of Patterns in Biosequences\u201d,Journal of Computational Biology, 5, 2, pp. 279\u2013305, 1998.","journal-title":"Journal of Computational Biology"},{"key":"BF03037578_CR7","doi-asserted-by":"crossref","unstructured":"Brazma, A., Jonassen, I., Vilo, J. and Ukkonen, E., \u201cPattern Discovery in Biosequences,\u201dInternational Colloquium on Grammatical Inference and Applications, pp. 255\u2013270. Springer-Verlag, 1998. LNAI 1433.","DOI":"10.1007\/BFb0054081"},{"key":"BF03037578_CR8","unstructured":"Bucher, P. and Bairoch, A., \u201cA Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation,\u201d inProc. of 2nd International Conference on Intelligent Systems for Molecular Biology, (Altman, R.et al., eds.), pp. 53\u201361. AAAI Press, 1994."},{"key":"BF03037578_CR9","doi-asserted-by":"crossref","first-page":"280","DOI":"10.1109\/9.746254","volume":"44","author":"V. K. Garg","year":"1999","unstructured":"Garg, V. K., Kumar, R. and Marcus, S. I., \u201cProbabilistic Language Formalism for Stochastic Discrete Event Systems\u201d,IEEE Trans. Automatic Control, 44, pp. 280\u2013293, February 1999.","journal-title":"IEEE Trans. Automatic Control"},{"key":"BF03037578_CR10","doi-asserted-by":"crossref","unstructured":"Handley, S., \u201cAutomated Learning of a Detector for the Cores of \u03b1-Helices in Protein Sequences Via Genetic Programming\u201d, inProc. of 1994 IEEE World congress on Computational Intelligence, 1, pp. 474\u2013479, IEEE Press, 1994.","DOI":"10.1109\/ICEC.1994.349904"},{"key":"BF03037578_CR11","unstructured":"Handley, S., \u201cClassifying Nucleic Acid Sub-Sequences as Introns or Exons Using Genetic Programming,\u201d inProc. of 3rd International Conference on Intelligent Systems for Molecular Biology (ISMB-95), pp. 162\u2013169, AAAI Press, 1995."},{"issue":"1","key":"BF03037578_CR12","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1093\/nar\/27.1.215","volume":"27","author":"K. Hofmann","year":"1999","unstructured":"Hofmann, K., Bucher, P., Falquet, L. and Bairoch, A., \u201cThe PROSITE database, its status in 1999,\u201dNucleic Acids Research, 27, 1, pp. 215\u2013219, 1999.","journal-title":"Nucleic Acids Research"},{"key":"BF03037578_CR13","doi-asserted-by":"crossref","unstructured":"Holland, J. H.,Adaptation in Natural and Artificial Systems, MIT Press, 1992.","DOI":"10.7551\/mitpress\/1090.001.0001"},{"key":"BF03037578_CR14","unstructured":"Hopcroft, J. E. and Ullman, J. D.,Introduction to Automata Theory, Languages, and Computation, Addison Wesley, 1979."},{"key":"BF03037578_CR15","unstructured":"Hu, Y.-J., \u201cBiopattern Discovery by Genetic Programming\u201d, inProc. of Genetic Programming 1998, (Koza, J. R.et al, eds), pp. 152\u2013157, Morgan Kaufmann, 1998."},{"key":"BF03037578_CR16","doi-asserted-by":"crossref","unstructured":"Karplus, K., Sjolander, K., Barrett, C., Cline, M., Haussler, D., Hughey, R., Holm, L. and Sander, C., \u201cPredicting Protein Structure Using Hidden Markov Models\u201d,Proteins: Structure, Function, and Genetics, pp. 134\u2013139, 1997, supplement 1.","DOI":"10.1002\/(SICI)1097-0134(1997)1+<134::AID-PROT18>3.0.CO;2-P"},{"key":"BF03037578_CR17","doi-asserted-by":"crossref","unstructured":"Kearns, M. J. and Vazirani, U. V.,An Introduction to Computational Learning Theory, MIT Press, 1994.","DOI":"10.7551\/mitpress\/3897.001.0001"},{"key":"BF03037578_CR18","unstructured":"Koza, J. R.,Genetic Programming: On the Programming of Computers by Means of Natural Selection, MIT Press, 1992."},{"key":"BF03037578_CR19","doi-asserted-by":"crossref","unstructured":"Koza, J. R., \u201cAutomated Discovery of Detectors and Iteration-Performing Calculations to Recognize Patterns in Protein Sequences Using Genetic Programming\u201d, inProc. of the Conference on Computer Vision and Pattern Recognition, pp. 684\u2013689, IEEE Press, 1994.","DOI":"10.1109\/CVPR.1994.323778"},{"key":"BF03037578_CR20","doi-asserted-by":"crossref","unstructured":"Koza, J. R., Bennett, F. H. and Andre, D., \u201cClassifying Proteins as Extracellular Using Programmatic Motifs and Genetic Programming\u201d, inProc. of 1998 IEEE World Congress on Computational Intelligence, pp. 212\u2013217, IEEE Press, 1998.","DOI":"10.1109\/ICEC.1998.699503"},{"key":"BF03037578_CR21","doi-asserted-by":"crossref","unstructured":"Koza, J.R., Bennett, F. H., Andre, D. and Keane, M. A.,Genetic Programming III: Darwinian Invention and Problem Solving, Morgan Kaufmann, 1999.","DOI":"10.1109\/TEVC.1999.788530"},{"key":"BF03037578_CR22","doi-asserted-by":"crossref","first-page":"1501","DOI":"10.1006\/jmbi.1994.1104","volume":"235","author":"A. Krogh","year":"1994","unstructured":"Krogh, A., Brown, M., Mian, I.S., Sjolander, K. and Haussler, D., \u201cHidden Markov Models in Computational Biology\u201d,Journal of Molecular Biology, 235, pp. 1501\u20131531, 1994.","journal-title":"Journal of Molecular Biology"},{"issue":"3","key":"BF03037578_CR23","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1023\/A:1026524328760","volume":"13","author":"B. J. Ross","year":"2000","unstructured":"Ross, B. J., \u201cProbabilistic Pattern Matching and the Evolution of Stochastic Regular Expressions\u201d,International Journal of Applied Intelligence, 13, 3, pp. 285\u2013300, November\/December 2000.","journal-title":"International Journal of Applied Intelligence"},{"issue":"4","key":"BF03037578_CR24","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1007\/BF03037572","volume":"19","author":"B. J. Ross","year":"2001","unstructured":"Ross, B. J., \u201cLogic-based Genetic Programming with Definite Clause Translation Grammars\u201d,New Generation Computing, 19, 4, pp. 313\u2013337, Springer-Verlag, 2001.","journal-title":"New Generation Computing"},{"key":"BF03037578_CR25","unstructured":"Ross, B. J., \u201cThe Evaluation of a Stochastic Regular Motif Language for Protein Sequences\u201d, inProc. of the Genetic and Evolutionary Computation Conference (GECCO-2001), (Spector, L.et al., eds.), pp. 120\u2013128, Morgan Kaufmann, 2001."},{"key":"BF03037578_CR26","doi-asserted-by":"crossref","first-page":"5112","DOI":"10.1093\/nar\/22.23.5112","volume":"22","author":"Y. Sakakibara","year":"1994","unstructured":"Sakakibara, Y., Brown, M., Hughey, R., Mian, I. S., Sjolander, K., Underwood, R. C. and Haussler, D., \u201cStochastic Context-Free Grammars for tRNA Modeling\u201d,Nucleic Acids Research, 22, 23, pp. 5112\u20135120, 1994.","journal-title":"Nucleic Acids Research"},{"key":"BF03037578_CR27","unstructured":"Searls, D. B., \u201cThe Computational Linguistics of Biological Sequences\u201d,Artificial Intelligence and Molecular Biology, (Hunter, L. ed.), pp. 47\u2013120, AAI Press, 1993."},{"issue":"1","key":"BF03037578_CR28","first-page":"2","volume":"24","author":"D. B. Searls","year":"1995","unstructured":"Searls, D. B., \u201cString Variable Grammar: a Logic Grammar Formalism for the Biological Language of DNA\u201d,Journal of Logic Programming, 24, 1, 2, 1995.","journal-title":"Journal of Logic Programming"}],"container-title":["New Generation Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/BF03037578.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/BF03037578\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/BF03037578","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,23]],"date-time":"2019-05-23T00:52:40Z","timestamp":1558572760000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/BF03037578"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2002,6]]},"references-count":28,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2002,6]]}},"alternative-id":["BF03037578"],"URL":"https:\/\/doi.org\/10.1007\/bf03037578","relation":{},"ISSN":["0288-3635","1882-7055"],"issn-type":[{"value":"0288-3635","type":"print"},{"value":"1882-7055","type":"electronic"}],"subject":[],"published":{"date-parts":[[2002,6]]}}}